SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Achromobacter xylosoxidans

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

816 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1852
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4720
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4313
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 342
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 345
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 302
Homeodomain-like Homeodomain-like 307
CheY-like C-terminal effector domain of the bipartite response regulators 303
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 296
Thioredoxin-like GST C-terminal domain-like 291
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 294
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 282
"Winged helix" DNA-binding domain GAF domain-like 271
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 217
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 202
"Winged helix" DNA-binding domain PLP-dependent transferases 191
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 194
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 183
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 185
Cytochrome c Cytochrome c 166
NAD(P)-binding Rossmann-fold domains GroES-like 163
P-loop containing nucleoside triphosphate hydrolases MOP-like 151
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 154
Thiolase-like Thiolase-like 142
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 144
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 133
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 133
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 133
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 132
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 133
RmlC-like cupins Homeodomain-like 132
Actin-like ATPase domain Actin-like ATPase domain 134
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 133
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 118
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1111
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 117
Enolase N-terminal domain-like Enolase C-terminal domain-like 111
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 119
Class I glutamine amidotransferase-like Homeodomain-like 102
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 105
P-loop containing nucleoside triphosphate hydrolases Translation proteins 106
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 93
Regulatory protein AraC Homeodomain-like 92
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 98
Homodimeric domain of signal transducing histidine kinase CheY-like 99
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 91
MetI-like MetI-like 93
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 93
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 94
CheY-like Homeodomain-like 84
Nucleotide cyclase EAL domain-like 86
"Winged helix" DNA-binding domain Chorismate lyase-like 82
Pectin lyase-like Autotransporter 85
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 82
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 83
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 85
CheY-like P-loop containing nucleoside triphosphate hydrolases 74
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
Calcium ATPase, transduction domain A HAD-like 75
HAD-like Calcium ATPase, transmembrane domain M 75
cAMP-binding domain-like "Winged helix" DNA-binding domain 71
PreATP-grasp domain Rudiment single hybrid motif 73
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 74
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 75
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 74
ISP domain Bet v1-like 62
Phospholipase D/nuclease Phospholipase D/nuclease 63
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 66
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 63
lambda repressor-like DNA-binding domains RmlC-like cupins 51
Translation proteins EF-G C-terminal domain-like 53
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 52
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 53
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 51
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
GAF domain-like Homodimeric domain of signal transducing histidine kinase 55
Alpha-L RNA-binding motif Pseudouridine synthase 52
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 53
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 43
PDZ domain-like PDZ domain-like 43
Trypsin-like serine proteases PDZ domain-like 43
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
(Trans)glycosidases Glycosyl hydrolase domain 44
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
Single hybrid motif CoA-dependent acyltransferases 43
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 43
Homeodomain-like SIS domain 41
Triger factor/SurA peptide-binding domain-like FKBP-like 44
Aconitase iron-sulfur domain LeuD/IlvD-like 43
TPR-like TPR-like 43
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 42
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 41
PYP-like sensor domain (PAS domain) Nucleotide cyclase 44
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 43
PurM N-terminal domain-like PurM C-terminal domain-like 42
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
GroES-like GroES-like 31
Phage tail proteins gp5 N-terminal domain-like 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
HlyD-like secretion proteins HlyD-like secretion proteins 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
ParB/Sulfiredoxin KorB DNA-binding domain-like 31
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 32
GAF domain-like CheY-like 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
ACT-like ACT-like 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
PYP-like sensor domain (PAS domain) GAF domain-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Histidine-containing phosphotransfer domain, HPT domain CheY-like 33
Nucleotidyltransferase ACT-like 32
Phage tail proteins Phage tail proteins 33
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 31
E set domains (Trans)glycosidases 33
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 33
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 33
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
HD-domain/PDEase-like ACT-like 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 31
HMA, heavy metal-associated domain HAD-like 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
HD-domain/PDEase-like Nucleotidyltransferase 32
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 31
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 32
PYP-like sensor domain (PAS domain) CheY-like 33
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 32
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
PYP-like sensor domain (PAS domain) EAL domain-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 33
Cyclophilin-like PH0987 N-terminal domain-like 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 33
RuvA domain 2-like Nucleic acid-binding proteins 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 32
CheY-like EAL domain-like 31
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 33
Cupredoxins Cupredoxins 32
PYP-like sensor domain (PAS domain) Homeodomain-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
TGS-like ACT-like 21
Pectin lyase-like Pectin lyase-like 22
Phosphohistidine domain Glutathione synthetase ATP-binding domain-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
PreATP-grasp domain Single hybrid motif 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
ClpP/crotonase ClpP/crotonase 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Nucleotidyltransferase TGS-like 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
CheY-like Methylesterase CheB, C-terminal domain 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
MFS general substrate transporter MFS general substrate transporter 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Sensory domain-like Nucleotide cyclase 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Formyltransferase FMT C-terminal domain-like 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
GroEL equatorial domain-like GroEL-intermediate domain like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
PDZ domain-like ClpP/crotonase 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 21
GroEL-intermediate domain like GroEL apical domain-like 21
alpha/beta-Hydrolases NTF2-like 22
CheY-like CheY-like 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 21
L30e-like alpha/beta knot 21
JAB1/MPN domain Cysteine proteinases 21
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 21
GAF domain-like Homeodomain-like 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Lysozyme-like PGBD-like 21
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Acetyl-CoA synthetase-like ACP-like 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
HD-domain/PDEase-like "Winged helix" DNA-binding domain 21
Sensory domain-like Sensory domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
beta-Roll beta-Roll 22
GroEL equatorial domain-like GroEL apical domain-like 21
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 21
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
PapD-like Periplasmic chaperone C-domain 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
GspK insert domain-like RuvA domain 2-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
Subtilisin-like Autotransporter 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 21
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 21
Rudiment single hybrid motif Single hybrid motif 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
GAF domain-like Nucleotide cyclase 22
Translation proteins ThrRS/AlaRS common domain 22
Nudix "Winged helix" DNA-binding domain 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Pili subunits RuvA domain 2-like 22
HD-domain/PDEase-like TGS-like 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 22
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 21
Pili subunits GspK insert domain-like 22
E set domains Glycosyl hydrolase domain 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 22
Zinc beta-ribbon DNA primase core 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Aldolase AFP III-like domain 11
HD-domain/PDEase-like C-terminal effector domain of the bipartite response regulators 11
PLP-dependent transferases PLP-dependent transferases 11
PurS-like FGAM synthase PurL, linker domain 11
Formyltransferase Acetyl-CoA synthetase-like 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain MOP-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Sialidases Sialidases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Acetyl-CoA synthetase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Ferredoxin reductase-like, C-terminal NADP-linked domain Creatinase/aminopeptidase 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
FMT C-terminal domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
2Fe-2S ferredoxin-like Creatinase/aminopeptidase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
ADC-like Riboflavin synthase domain-like 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
TGS-like ThrRS/AlaRS common domain 11
ACT-like Formyltransferase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
E set domains alpha/beta-Hydrolases 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
EAL domain-like CBS-domain pair 11
Putative DNA-binding domain Citrate synthase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Carbamate kinase-like ACT-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
CoA-dependent acyltransferases GroES-like 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
FMT C-terminal domain-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Class II aaRS and biotin synthetases Translation proteins 11
UROD/MetE-like UROD/MetE-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
ADC-like Flavoproteins 11
Nucleotide-diphospho-sugar transferases EspE N-terminal domain-like 11
Cyclophilin-like Single hybrid motif 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
CoA-dependent acyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Trypsin-like serine proteases Pectin lyase-like 11
LysM domain LysM domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
CarD-like TRCF domain-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like Nucleotide-binding domain 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Trigger factor ribosome-binding domain FKBP-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Ribonuclease H-like DNA/RNA polymerases 11
LmbE-like Fucose-specific lectin 11
MurE/MurF N-terminal domain MurE/MurF N-terminal domain 11
PH0987 N-terminal domain-like Single hybrid motif 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PreATP-grasp domain PreATP-grasp domain 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Riboflavin synthase domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Periplasmic binding protein-like II ACT-like 11
Nudix Thiamin phosphate synthase 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
vWA-like beta-Roll 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Tex N-terminal region-like RuvA domain 2-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Acyl-CoA N-acyltransferases (Nat) 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Clc chloride channel CBS-domain pair 11
ACP-like FabD/lysophospholipase-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Formyltransferase ACP-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Acetyl-CoA synthetase-like Thiolase-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
S-adenosyl-L-methionine-dependent methyltransferases GroES-like 11
TPR-like Porins 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Flavoproteins Riboflavin synthase domain-like 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Ankyrin repeat Ankyrin repeat 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Globin-like Riboflavin synthase domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
FMT C-terminal domain-like CoA-dependent acyltransferases 11
FMT C-terminal domain-like ACP-like 11
(Trans)glycosidases (Trans)glycosidases 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
NTF2-like Acyl-CoA binding protein 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Molybdenum cofactor-binding domain Cytochrome c 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
PurS-like Class I glutamine amidotransferase-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
PIN domain-like Ribonuclease H-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
ACP-like Trimeric LpxA-like enzymes 11
DNA clamp DNA clamp 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Nucleic acid-binding proteins GAD domain-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Homeodomain-like DNA-glycosylase 11
PreATP-grasp domain Cyclophilin-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Cyclophilin-like Cyclophilin-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
GAF domain-like GAF domain-like 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
FAD/NAD(P)-binding domain NAD(P)-binding Rossmann-fold domains 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
CheC-like Surface presentation of antigens (SPOA) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Galactose-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
MgtE N-terminal domain-like CBS-domain pair 11
CBS-domain pair Nucleotide cyclase 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Pili subunits Pili subunits 11
Formyltransferase S-adenosyl-L-methionine-dependent methyltransferases 11
Tautomerase/MIF FAH 11
YrdC/RibB RibA-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Thiolase-like Heme oxygenase-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Cupredoxins Cytochrome c 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Phage tail proteins Phage fibre proteins 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
PheT/TilS domain Putative DNA-binding domain 11
ABC transporter transmembrane region CheY-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Trypsin-like serine proteases Autotransporter 11
UDP-Glycosyltransferase/glycogen phosphorylase Acyl-CoA N-acyltransferases (Nat) 11
Ribosomal protein L6 Ribosomal protein L6 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Chorismate mutase II ACT-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Translation proteins "Winged helix" DNA-binding domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
PHP14-like Phospholipase D/nuclease 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
S-adenosyl-L-methionine-dependent methyltransferases FabD/lysophospholipase-like 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
ADC-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
RNase III domain-like dsRNA-binding domain-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
TGS-like Class II aaRS and biotin synthetases 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Galactose mutarotase-like (Trans)glycosidases 11
Nucleotidylyl transferase tRNA-binding arm 11
Formyltransferase CoA-dependent acyltransferases 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
FKBP-like FKBP-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Formyltransferase Thiolase-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
S-adenosyl-L-methionine-dependent methyltransferases Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
CoA-dependent acyltransferases FabD/lysophospholipase-like 11
Actin-like ATPase domain Acyl-CoA N-acyltransferases (Nat) 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
PPK N-terminal domain-like PHP14-like 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
ACP-like GroES-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
MOP-like MOP-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
DNA-glycosylase Nudix 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Acetyl-CoA synthetase-like GroES-like 11
RelE-like P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
ACP-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
ACP-like ACP-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
RuvA domain 2-like BRCT domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Periplasmic binding protein-like II 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Translation proteins Translation proteins 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
FAD-linked oxidoreductase ALDH-like 11
RmlC-like cupins Rhodanese/Cell cycle control phosphatase 11
S-adenosyl-L-methionine-dependent methyltransferases Thiolase-like 11
Homeodomain-like TATA-box binding protein-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Thiolase-like GroES-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Methionine synthase domain Methionine synthase activation domain-like 11
HAMP domain-like GAF domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
GIY-YIG endonuclease RuvA domain 2-like 11
Nucleic acid-binding proteins NAD(P)-binding Rossmann-fold domains 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Ribonuclease H-like RuvA domain 2-like 11
ACP-like Thiolase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Globin-like Clavaminate synthase-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
HCP-like HCP-like 11
HD-domain/PDEase-like NTF2-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
YajQ-like YajQ-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Tropomyosin Smc hinge domain 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like RuvA domain 2-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Macro domain-like Zn-dependent exopeptidases 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Flavoproteins 11
Acetyl-CoA synthetase-like FabD/lysophospholipase-like 11
Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Formyltransferase NAD(P)-binding Rossmann-fold domains 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Single hybrid motif Single hybrid motif 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
"Winged helix" DNA-binding domain Rhodanese/Cell cycle control phosphatase 11
vWA-like TPR-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
CBS-domain pair MgtE membrane domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
CoA-dependent acyltransferases ACP-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
UraD-Like Bacterial exopeptidase dimerisation domain 11
Alkaline phosphatase-like Concanavalin A-like lectins/glucanases 11
Globin-like Nucleotide cyclase 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Formyltransferase Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
CheY-binding domain of CheA CheW-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Putative DNA-binding domain Translation proteins 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Resolvase-like Homeodomain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
Bacterial muramidases Lysozyme-like 11
Hsp33 domain HSP33 redox switch-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
FMT C-terminal domain-like FabD/lysophospholipase-like 11
FMT C-terminal domain-like NAD(P)-binding Rossmann-fold domains 11
Metallo-dependent phosphatases Concanavalin A-like lectins/glucanases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
CheY-like Nucleotide cyclase 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Nucleic acid-binding proteins BRCT domain 11
Type III secretion system domain Type III secretion system domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Thioredoxin-like Nqo1 middle domain-like 11
Homodimeric domain of signal transducing histidine kinase Periplasmic binding protein-like II 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Riboflavin synthase domain-like Creatinase/aminopeptidase 11
2Fe-2S ferredoxin-like ADC-like 11
Subtilisin-like Pectin lyase-like 11
Ribbon-helix-helix ALDH-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Acetyl-CoA synthetase-like S-adenosyl-L-methionine-dependent methyltransferases 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Rudiment single hybrid motif Cyclophilin-like 11
Carbamate kinase-like PUA domain-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
E set domains E set domains 11
Formyltransferase FabD/lysophospholipase-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
UraD-Like Zn-dependent exopeptidases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
TGS-like Class II aaRS ABD-related 11
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
ABC transporter transmembrane region ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
C-terminal effector domain of the bipartite response regulators EAL domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Formyltransferase GroES-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
DNA primase core DNA primase DnaG, C-terminal domain 11
AhpD-like AhpD-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PurS-like PurM N-terminal domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
PurS-like PurM C-terminal domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Nucleotidylyl transferase YegP-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
CoA-dependent acyltransferases Thiolase-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
FMT C-terminal domain-like Acetyl-CoA synthetase-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, catalytic domain 11
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PUA domain-like alpha/beta knot 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Trypsin-like serine proteases His-Me finger endonucleases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PIN domain-like DNA/RNA polymerases 11
Aldolase post-HMGL domain-like 11
Thiolase-like FabD/lysophospholipase-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
CheW-like CheY-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Oxidoreductase molybdopterin-binding domain E set domains 11
GAF domain-like EAL domain-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
RuvA domain 2-like JAB1/MPN domain 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
FMT C-terminal domain-like Thiolase-like 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
TATA-box binding protein-like DNA-glycosylase 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
Acylphosphatase/BLUF domain-like EAL domain-like 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
FliG FliG 11
gp5 N-terminal domain-like Phage fibre proteins 11
Chalcone isomerase Acetyl-CoA synthetase-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
FMT C-terminal domain-like GroES-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Lysozyme-like LysM domain 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Barwin-like endoglucanases Sporulation related repeat 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Phase 1 flagellin Phase 1 flagellin 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Nucleotide-binding domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
4Fe-4S ferredoxins ADC-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
ABC transporter transmembrane region ABC transporter transmembrane region 11
Methylglyoxal synthase-like Methylglyoxal synthase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
FabD/lysophospholipase-like GroES-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Homeodomain-like Probable bacterial effector-binding domain 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
alpha/beta-Hydrolases Acyl-CoA binding protein 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
CoA-dependent acyltransferases Probable ACP-binding domain of malonyl-CoA ACP transacylase 11

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