SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Porphyridium purpureum 02_2012

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

982 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 8034
beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 314
ARM repeat ARM repeat 2314
PH domain-like Protein kinase-like (PK-like) 226
Ribonuclease H-like DNA/RNA polymerases 2210
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 206
Thioredoxin-like GST C-terminal domain-like 205
P-loop containing nucleoside triphosphate hydrolases Translation proteins 2013
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 186
TPR-like TPR-like 1811
Actin-like ATPase domain Actin-like ATPase domain 1810
HCP-like HCP-like 1710
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 145
Calcium ATPase, transduction domain A HAD-like 135
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 135
Calcium ATPase, transmembrane domain M HAD-like 135
GroEL equatorial domain-like GroEL apical domain-like 121
GroEL equatorial domain-like GroEL-intermediate domain like 121
GroES-like NAD(P)-binding Rossmann-fold domains 123
RNA-binding domain, RBD RNA-binding domain, RBD 127
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 1210
GroEL-intermediate domain like GroEL apical domain-like 121
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 117
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 116
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 113
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 113
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 113
Translation proteins EF-G C-terminal domain-like 118
Ypt/Rab-GAP domain of gyp1p Ypt/Rab-GAP domain of gyp1p 116
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 119
Acid proteases Ribonuclease H-like 106
Protein kinase-like (PK-like) HCP-like 105
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 105
CRAL/TRIO N-terminal domain CRAL/TRIO domain 105
EF-G C-terminal domain-like EF-G C-terminal domain-like 107
Nucleic acid-binding proteins Nucleic acid-binding proteins 1010
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 107
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 95
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 93
Cyclin-like Cyclin-like 96
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 95
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 91
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 98
ARM repeat Protein kinase-like (PK-like) 87
EF-hand Protein kinase-like (PK-like) 85
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 83
EF-hand EF-hand 87
C2 domain (Calcium/lipid-binding domain, CaLB) C2 domain (Calcium/lipid-binding domain, CaLB) 87
Homeodomain-like Homeodomain-like 86
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 75
WD40 repeat-like WD40 repeat-like 76
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 73
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 76
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 74
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 75
Retrovirus zinc finger-like domains Acid proteases 73
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 73
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 75
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 73
Thiolase-like Thiolase-like 73
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 74
Chaperone J-domain HSP40/DnaJ peptide-binding domain 65
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 64
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 64
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 63
Voltage-gated potassium channels Voltage-gated potassium channels 65
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 65
Starch-binding domain-like Starch-binding domain-like 65
Translation proteins Ribosomal protein S5 domain 2-like 64
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 62
CBS-domain pair CBS-domain pair 64
Thioredoxin-like Thioredoxin-like 65
UDP-Glycosyltransferase/glycogen phosphorylase HAD-like 63
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 64
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 64
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 64
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 65
Class II aaRS and biotin synthetases Class II aaRS ABD-related 66
Single hybrid motif CoA-dependent acyltransferases 65
PreATP-grasp domain Rudiment single hybrid motif 65
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 53
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 54
Ankyrin repeat Ankyrin repeat 52
(Trans)glycosidases E set domains 55
Trypsin-like serine proteases PDZ domain-like 54
Glutathione synthetase ATP-binding domain-like Single hybrid motif 54
ABC transporter transmembrane region ABC transporter transmembrane region 53
Globin-like Riboflavin synthase domain-like 52
C2 domain (Calcium/lipid-binding domain, CaLB) vWA-like 54
ACT-like ACT-like 54
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 52
Trypsin-like serine proteases Hedgehog/intein (Hint) domain 53
PreATP-grasp domain Single hybrid motif 54
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 53
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 53
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 54
Starch-binding domain-like (Trans)glycosidases 54
Retrovirus zinc finger-like domains Ribonuclease H-like 54
Clc chloride channel CBS-domain pair 51
beta-sandwich domain of Sec23/24 Zn-finger domain of Sec23/24 54
ClpP/crotonase ClpP/crotonase 55
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
DNA/RNA polymerases Chromo domain-like 53
Nucleic acid-binding proteins Translation proteins SH3-like domain 54
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 54
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 53
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 52
SET domain RuBisCo LSMT C-terminal, substrate-binding domain 52
Rudiment single hybrid motif Single hybrid motif 54
Ribonuclease H-like Chromo domain-like 53
PDZ domain-like ClpP/crotonase 52
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 43
P-loop containing nucleoside triphosphate hydrolases TGS-like 41
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 44
dsRNA-binding domain-like dsRNA-binding domain-like 42
RNase III domain-like dsRNA-binding domain-like 42
vWA-like C-terminal, gelsolin-like domain of Sec23/24 43
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 44
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 43
Zn-finger domain of Sec23/24 vWA-like 43
vWA-like Helical domain of Sec23/24 43
beta-sandwich domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 43
Ribonuclease H-like Ribonuclease H-like 42
SWIB/MDM2 domain SWIB/MDM2 domain 43
ARM repeat Clathrin adaptor appendage domain 43
Thioredoxin-like Ubiquitin-like 44
BRK domain-like BRK domain-like 43
HD-domain/PDEase-like Nucleotidyltransferase 44
beta-sandwich domain of Sec23/24 Helical domain of Sec23/24 43
Cullin repeat-like Cullin homology domain 43
P-loop containing nucleoside triphosphate hydrolases RING/U-box 43
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 44
Zn-finger domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 43
TPR-like Chaperone J-domain 43
(Trans)glycosidases Glycosyl hydrolase domain 44
Phospholipase D/nuclease Phospholipase D/nuclease 44
Oxidoreductase molybdopterin-binding domain E set domains 43
Cullin homology domain "Winged helix" DNA-binding domain 43
Voltage-gated potassium channels EF-hand 44
E set domains Cytochrome b5-like heme/steroid binding domain 43
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 42
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 43
SNARE-like SNARE fusion complex 41
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 44
beta-sandwich domain of Sec23/24 vWA-like 43
Oxidoreductase molybdopterin-binding domain Cytochrome b5-like heme/steroid binding domain 43
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 43
Helical domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 43
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 43
PLP-binding barrel Alanine racemase C-terminal domain-like 42
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 43
Zn-finger domain of Sec23/24 Helical domain of Sec23/24 43
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 42
Sec63 N-terminal domain-like E set domains 33
Voltage-gated potassium channels cAMP-binding domain-like 31
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
P-loop containing nucleoside triphosphate hydrolases Sec63 N-terminal domain-like 33
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 32
FYVE/PHD zinc finger RING/U-box 33
Tudor/PWWP/MBT FYVE/PHD zinc finger 33
tRNA-binding arm Class II aaRS and biotin synthetases 32
Clathrin heavy-chain terminal domain ARM repeat 32
PK beta-barrel domain-like PK C-terminal domain-like 32
WD40 repeat-like Quinoprotein alcohol dehydrogenase-like 33
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 33
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 31
RING/U-box Cysteine proteinases 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 33
FYVE/PHD zinc finger FYVE/PHD zinc finger 33
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 32
Translation proteins ThrRS/AlaRS common domain 33
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 32
Starch-binding domain-like (Phosphotyrosine protein) phosphatases II 33
Cullin repeat-like "Winged helix" DNA-binding domain 32
E set domains Glycosyl hydrolase domain 33
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 32
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 31
SNARE-like Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 32
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 33
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 32
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 33
Flavoproteins Riboflavin synthase domain-like 32
E set domains E set domains 33
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 32
WD40 repeat-like EF-hand 33
Galactose-binding domain-like NAD(P)-binding Rossmann-fold domains 31
Ubiquitin-like UBA-like 33
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
GroES-like GroES-like 32
PAZ domain Ribonuclease H-like 32
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 32
YjgF-like YjgF-like 32
NAD(P)-binding Rossmann-fold domains ACT-like 33
Pentapeptide repeat-like Pentapeptide repeat-like 33
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 33
Tudor/PWWP/MBT SET domain 33
RING/U-box WD40 repeat-like 33
Enolase N-terminal domain-like Enolase C-terminal domain-like 32
Acid proteases DNA/RNA polymerases 32
Nucleotidylyl transferase Ribosomal protein L25-like 33
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 32
FYVE/PHD zinc finger SET domain 33
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins 33
CCCH zinc finger CCCH zinc finger 31
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
(Trans)glycosidases Galactose-binding domain-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
FYVE/PHD zinc finger P-loop containing nucleoside triphosphate hydrolases 33
Retrovirus zinc finger-like domains Retrovirus zinc finger-like domains 22
P-loop containing nucleoside triphosphate hydrolases E set domains 22
Chromo domain-like Acyl-CoA N-acyltransferases (Nat) 22
Ubiquitin-like Zn-binding ribosomal proteins 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Metallo-dependent phosphatases EF-hand 22
CBS-domain pair CAD & PB1 domains 22
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
EF-hand Mitochondrial carrier 22
Sec63 N-terminal domain-like Sec63 N-terminal domain-like 22
beta-carbonic anhydrase, cab beta-carbonic anhydrase, cab 21
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
HD-domain/PDEase-like TGS-like 22
alpha-ketoacid dehydrogenase kinase, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
"Winged helix" DNA-binding domain E2F-DP heterodimerization region 21
Translational machinery components L30e-like 22
N-terminal domain of adenylylcyclase associated protein, CAP N-terminal domain of adenylylcyclase associated protein, CAP 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 22
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 22
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Zinc-binding domain of translation initiation factor 2 beta 22
L9 N-domain-like Ribonuclease H-like 21
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
FKBP-like TPR-like 22
PAH2 domain PAH2 domain 21
P-loop containing nucleoside triphosphate hydrolases EF-hand 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
ADC-like P-loop containing nucleoside triphosphate hydrolases 21
Nucleic acid-binding proteins BRCT domain 22
RCC1/BLIP-II RCC1/BLIP-II 22
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 22
RING/U-box HCP-like 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 21
E set domains Ferredoxin reductase-like, C-terminal NADP-linked domain 21
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 22
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 22
Class II aaRS and biotin synthetases C-terminal domain of ProRS 22
Concanavalin A-like lectins/glucanases P-domain of calnexin/calreticulin 21
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 22
P-loop containing nucleoside triphosphate hydrolases vWA-like 22
Initiation factor IF2/eIF5b, domain 3 Translation proteins 22
Protein kinase-like (PK-like) Ankyrin repeat 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
DHH phosphoesterases CBS-domain pair 22
Actin depolymerizing proteins Actin depolymerizing proteins 22
Ribonuclease H-like CCCH zinc finger 22
CCCH zinc finger RNA-binding domain, RBD 22
Ubiquitin-like PUG domain-like 22
RNI-like RNI-like 21
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 22
Creatinase/aminopeptidase "Winged helix" DNA-binding domain 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases Bromodomain 21
CHY zinc finger-like RING/U-box 21
Single hybrid motif ClpP/crotonase 22
Elongation factor TFIIS domain 2 Zinc beta-ribbon 22
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Rhodanese/Cell cycle control phosphatase S-adenosyl-L-methionine-dependent methyltransferases 22
Ubiquitin-like HAD-like 21
Heme-dependent peroxidases Riboflavin synthase domain-like 21
Single hybrid motif Single hybrid motif 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
ENTH/VHS domain GAT-like domain 22
ThrRS/AlaRS common domain Class II aaRS ABD-related 22
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 22
ADC-like Cdc48 domain 2-like 21
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 22
Rudiment single hybrid motif ClpP/crotonase 22
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 22
Formin homology 2 domain (FH2 domain) Formin homology 2 domain (FH2 domain) 22
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 21
PreATP-grasp domain Methylglyoxal synthase-like 22
"Winged helix" DNA-binding domain RNA-binding domain, RBD 22
Restriction endonuclease-like RuvA domain 2-like 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Kelch motif Kelch motif 22
Periplasmic binding protein-like I Periplasmic binding protein-like II 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
FKBP-like FKBP-like 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
Sec7 domain ARM repeat 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 21
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 22
PUA domain-like Nucleotidylyl transferase 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Nucleotidyltransferase ACT-like 22
Zinc beta-ribbon Cyclin-like 22
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 22
Class II aaRS ABD-related C-terminal domain of ProRS 22
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 22
L30e-like alpha/beta knot 22
"Winged helix" DNA-binding domain Protein kinase-like (PK-like) 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 22
HD-domain/PDEase-like ACT-like 22
Protein kinase-like (PK-like) ENTH/VHS domain 22
PreATP-grasp domain ClpP/crotonase 22
ARM repeat RING/U-box 22
ARM repeat P-loop containing nucleoside triphosphate hydrolases 22
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 22
Chromo domain-like Chromo domain-like 22
Ribonuclease H-like HRDC-like 22
Carbamate kinase-like ACT-like 22
CHY zinc finger-like Zinc hairpin stack 21
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 22
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 22
Oxidoreductase molybdopterin-binding domain Ferredoxin reductase-like, C-terminal NADP-linked domain 21
Starch-binding domain-like UDP-Glycosyltransferase/glycogen phosphorylase 21
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 22
Pentapeptide repeat-like Hedgehog/intein (Hint) domain 22
P-loop containing nucleoside triphosphate hydrolases Phosphoglycerate mutase-like 21
Cytochrome b5-like heme/steroid binding domain Ferredoxin reductase-like, C-terminal NADP-linked domain 21
PAP/OAS1 substrate-binding domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 22
Alpha-L RNA-binding motif Pseudouridine synthase 22
N-terminal, heterodimerisation domain of RBP7 (RpoE) Nucleic acid-binding proteins 21
Acid proteases Chromo domain-like 21
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 21
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 22
Zinc hairpin stack RING/U-box 21
POZ domain Skp1 dimerisation domain-like 21
E set domains Riboflavin synthase domain-like 21
BEACH domain WD40 repeat-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Fe-S cluster assembly (FSCA) domain-like Fe-S cluster assembly (FSCA) domain-like 21
DPP6 N-terminal domain-like alpha/beta-Hydrolases 21
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
TGS-like ACT-like 22
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 22
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 21
PreATP-grasp domain PreATP-grasp domain 22
Nucleotidyltransferase TGS-like 22
Chromo domain-like P-loop containing nucleoside triphosphate hydrolases 22
F-box domain RNI-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
BRCT domain RING/U-box 22
F-box domain vWA-like 21
Heme-dependent peroxidases Ferredoxin reductase-like, C-terminal NADP-linked domain 21
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 22
F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 21
RING/U-box PUA domain-like 22
Oxidoreductase molybdopterin-binding domain Riboflavin synthase domain-like 21
Class II aaRS and biotin synthetases Translation proteins 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 22
Starch-binding domain-like HAD-like 21
Cytochrome b5-like heme/steroid binding domain Riboflavin synthase domain-like 21
FKBP-like Rhodanese/Cell cycle control phosphatase 21
Homeodomain-like RING/U-box 22
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 22
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 22
Nucleotidyltransferase PAP/Archaeal CCA-adding enzyme, C-terminal domain 22
Nicotinic receptor ligand binding domain-like Neurotransmitter-gated ion-channel transmembrane pore 21
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
HAD-like BRCT domain 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
ARID-like FYVE/PHD zinc finger 11
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment DNA breaking-rejoining enzymes 11
YrdC/RibB RibA-like 11
F-box domain RING/U-box 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
TPR-like RNA-binding domain, RBD 11
TRAF domain-like Cysteine proteinases 11
Nucleotidyltransferase Nucleotidyltransferase 11
Ankyrin repeat S-adenosyl-L-methionine-dependent methyltransferases 11
Acyl-CoA N-acyltransferases (Nat) S-adenosyl-L-methionine-dependent methyltransferases 11
PRP4-like WD40 repeat-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
SPOC domain-like SAP domain 11
beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase 11
Carbamoyl phosphate synthetase, large subunit connection domain Metallo-dependent hydrolases 11
Macro domain-like Zn-dependent exopeptidases 11
ARM repeat Subdomain of clathrin and coatomer appendage domain 11
RNA-binding domain, RBD DPP6 N-terminal domain-like 11
HAD-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
PurS-like PurM N-terminal domain-like 11
Carbonic anhydrase Hedgehog/intein (Hint) domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Hedgehog/intein (Hint) domain EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
UROD/MetE-like UROD/MetE-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Chaperone J-domain BRCT domain 11
Hedgehog/intein (Hint) domain Translation proteins 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
Thioredoxin-like Six-hairpin glycosidases 11
NAD(P)-binding Rossmann-fold domains Citrate synthase 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Heat shock protein 70kD (HSP70), C-terminal subdomain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
CAD & PB1 domains RING/U-box 11
NTF2-like Probable bacterial effector-binding domain 11
Pre-PUA domain PUA domain-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
BRCT domain post-AAA+ oligomerization domain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases RNA-binding domain, RBD 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
Ankyrin repeat L domain-like 11
Acyl-CoA N-acyltransferases (Nat) Bromodomain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Nucleic acid-binding proteins "Winged helix" DNA-binding domain 11
Soluble quinoprotein glucose dehydrogenase Kelch motif 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
RING/U-box VC0467-like 11
P-loop containing nucleoside triphosphate hydrolases NAD kinase/diacylglycerol kinase-like 11
Galactose-binding domain-like Soluble quinoprotein glucose dehydrogenase 11
Periplasmic binding protein-like II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases PRTase-like 11
Starch-binding domain-like P-loop containing nucleoside triphosphate hydrolases 11
ISP domain Bet v1-like 11
PH domain-like WD40 repeat-like 11
Inosine monophosphate dehydrogenase (IMPDH) Hedgehog/intein (Hint) domain 11
P-loop containing nucleoside triphosphate hydrolases PLP-dependent transferases 11
PH domain-like Oxysterol-binding protein-like 11
ARM repeat FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 11
Ribokinase-like ADP-ribosylation 11
Inosine monophosphate dehydrogenase (IMPDH) Inosine monophosphate dehydrogenase (IMPDH) 11
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
SMAD/FHA domain SAP domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
FYVE/PHD zinc finger BRCT domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
PLP-dependent transferases MOSC N-terminal domain-like 11
Nucleic acid-binding proteins eIF2alpha middle domain-like 11
P-loop containing nucleoside triphosphate hydrolases Homing endonucleases 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
Starch-binding domain-like SGNH hydrolase 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Zinc beta-ribbon 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Glucocorticoid receptor-like (DNA-binding domain) DNA polymerase beta, N-terminal domain-like 11
Class I glutamine amidotransferase-like PreATP-grasp domain 11
Thioredoxin-like PUG domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
post-HMGL domain-like Single hybrid motif 11
Quinoprotein alcohol dehydrogenase-like BAG domain 11
PLP-dependent transferases Rhodanese/Cell cycle control phosphatase 11
DNA clamp DNA clamp 11
Hedgehog/intein (Hint) domain Homing endonucleases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Flavoproteins Dimeric alpha+beta barrel 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
PP2C-like PP2C-like 11
alpha/beta-Hydrolases Enolase C-terminal domain-like 11
alpha/beta-Hydrolases Thioredoxin-like 11
PreATP-grasp domain Aldolase 11
HIT-like HIT-like 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
NTF2-like RNA-binding domain, RBD 11
SAP domain SAP domain 11
Nucleic acid-binding proteins GAD domain-like 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
UBC-like Ribosomal protein S5 domain 2-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Ubiquitin-like Acid proteases 11
HRDC-like HRDC-like 11
Ubiquitin-like Leucine zipper domain 11
Amine oxidase N-terminal region Amine oxidase catalytic domain 11
FYVE/PHD zinc finger Cysteine proteinases 11
GST C-terminal domain-like Ribosomal protein L25-like 11
UDP-Glycosyltransferase/glycogen phosphorylase E set domains 11
PreATP-grasp domain Metallo-dependent hydrolases 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleoporin domain WD40 repeat-like 11
Sec63 N-terminal domain-like "Winged helix" DNA-binding domain 11
ENTH/VHS domain UBA-like 11
Tudor/PWWP/MBT Elongation factor TFIIS domain 2 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
ACT-like PH domain-like 11
NAD(P)-binding Rossmann-fold domains Thiolase-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Bromodomain Bromodomain 11
Amine oxidase N-terminal region Amine oxidase N-terminal region 11
Protein kinase-like (PK-like) KA1-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Cysteine proteinases UBA-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Rudiment single hybrid motif post-HMGL domain-like 11
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Aldolase Aminoacid dehydrogenase-like, N-terminal domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Acyl-CoA N-acyltransferases (Nat) Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Calcium-dependent phosphotriesterase Quinoprotein alcohol dehydrogenase-like 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK Dihydropteroate synthetase-like 11
Pectin lyase-like (Trans)glycosidases 11
Ran binding protein zinc finger-like RING/U-box 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
ARM repeat WD40 repeat-like 11
F-box domain P-loop containing nucleoside triphosphate hydrolases 11
BRCT domain P-loop containing nucleoside triphosphate hydrolases 11
Dom34/Pelota N-terminal domain-like Translational machinery components 11
TGS-like Class II aaRS ABD-related 11
Nucleic acid-binding proteins RuvA domain 2-like 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Translational machinery components 11
EF-hand PLC-like phosphodiesterases 11
GST C-terminal domain-like Nucleotidylyl transferase 11
Zinc beta-ribbon DNA primase core 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleotidylyl transferase Nucleotidylyl transferase 11
Lipocalins Lipocalins 11
N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) SAICAR synthase-like 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) P-loop containing nucleoside triphosphate hydrolases 11
Tudor/PWWP/MBT Zinc beta-ribbon 11
Glucocorticoid receptor-like (DNA-binding domain) BRCT domain 11
WW domain BAG domain 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Formyltransferase FMT C-terminal domain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
CarD-like TRCF domain-like 11
TPR-like "Winged helix" DNA-binding domain 11
Glutathione synthetase ATP-binding domain-like Metallo-dependent hydrolases 11
Kelch motif Galactose oxidase, central domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Zn-dependent exopeptidases 11
Endosomal sorting complex assembly domain VPS28 C-terminal domain-like 11
UBC-like Endosomal sorting complex assembly domain 11
Toll/Interleukin receptor TIR domain Protein kinase-like (PK-like) 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Rad51 N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
TPR-like Nucleotide-diphospho-sugar transferases 11
Eukaryotic type KH-domain (KH-domain type I) SMR domain-like 11
UBA-like UBA-like 11
ArfGap/RecO-like zinc finger UBA-like 11
Cysteine proteinases Cysteine proteinases 11
t-snare proteins SNARE fusion complex 11
ACT-like HAD-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
ITPase-like PRTase-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Galactose-binding domain-like Galactose-binding domain-like 11
2Fe-2S ferredoxin-like Fe-only hydrogenase 11
FAD-binding/transporter-associated domain-like CO dehydrogenase molybdoprotein N-domain-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Metallo-dependent hydrolases Aspartate/ornithine carbamoyltransferase 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Dcp2 domain-like Nudix 11
EF-hand Ankyrin repeat 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Ypt/Rab-GAP domain of gyp1p Rhodanese/Cell cycle control phosphatase 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Calcium-dependent phosphotriesterase WD40 repeat-like 11
Urease, beta-subunit Metallo-dependent hydrolases 11
Inorganic pyrophosphatase Carbohydrate phosphatase 11
Serine metabolism enzymes domain ACT-like 11
Rudiment single hybrid motif Aldolase 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 L30e-like 11
eIF2alpha middle domain-like eIF-2-alpha, C-terminal domain 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
C2 domain (Calcium/lipid-binding domain, CaLB) Lipase/lipooxygenase domain (PLAT/LH2 domain) 11
Class I glutamine amidotransferase-like Methylglyoxal synthase-like 11
Starch-binding domain-like Formin homology 2 domain (FH2 domain) 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 11
S-adenosyl-L-methionine-dependent methyltransferases R3H domain 11
ARM repeat "Winged helix" DNA-binding domain 11
Tudor/PWWP/MBT Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
PHP14-like Phospholipase D/nuclease 11
PRTase-like Ribulose-phoshate binding barrel 11
Urease, gamma-subunit Urease, beta-subunit 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
FYVE/PHD zinc finger RNI-like 11
"Winged helix" DNA-binding domain FAD/NAD(P)-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Class I glutamine amidotransferase-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase, N-terminal domain 11
NAD(P)-binding Rossmann-fold domains Trimeric LpxA-like enzymes 11
"Winged helix" DNA-binding domain CCCH zinc finger 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
ATP-dependent DNA ligase DNA-binding domain BRCT domain 11
Duplicated hybrid motif PLP-dependent transferases 11
4Fe-4S ferredoxins Fe-only hydrogenase 11
RING/U-box Ankyrin repeat 11
UBC-like Protein kinase-like (PK-like) 11
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Elongation factor TFIIS domain 2 11
MIT domain P-loop containing nucleoside triphosphate hydrolases 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
E set domains "Winged helix" DNA-binding domain 11
dsRNA-binding domain-like P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like YjgF-like 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
PX domain BAR/IMD domain-like 11
Class I glutamine amidotransferase-like Glutathione synthetase ATP-binding domain-like 11
Putative DNA-binding domain Putative DNA-binding domain 11
L domain-like Protein kinase-like (PK-like) 11
ClpP/crotonase Thiolase-like 11
CarD-like P-loop containing nucleoside triphosphate hydrolases 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Pseudouridine synthase PUA domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Clavaminate synthase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Kelch motif RING/U-box 11
PA domain Transferrin receptor-like dimerisation domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
(Trans)glycosidases UDP-Glycosyltransferase/glycogen phosphorylase 11
PsbU/PolX domain-like Nucleotidyltransferase 11
Glucocorticoid receptor-like (DNA-binding domain) AN1-like Zinc finger 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Ribokinase-like Dimeric alpha+beta barrel 11
FYVE/PHD zinc finger Clavaminate synthase-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Trefoil Trefoil 11
Trigger factor ribosome-binding domain FKBP-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
PA domain Zn-dependent exopeptidases 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Methylglyoxal synthase-like Aspartate/ornithine carbamoyltransferase 11
Zn-dependent exopeptidases Hedgehog/intein (Hint) domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
RNase III domain-like RNase III domain-like 11
Nucleotidyltransferase Clavaminate synthase-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
FMN-binding split barrel Riboflavin synthase domain-like 11
TPR-like Metallo-dependent phosphatases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Trimeric LpxA-like enzymes 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
BRCT domain BRCT domain 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
P-loop containing nucleoside triphosphate hydrolases R3H domain 11
Ribosomal L27 protein-like Nucleic acid-binding proteins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
"Winged helix" DNA-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Rhodanese/Cell cycle control phosphatase (Phosphotyrosine protein) phosphatases II 11
S-adenosyl-L-methionine-dependent methyltransferases Starch-binding domain-like 11
PreATP-grasp domain Aspartate/ornithine carbamoyltransferase 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Hsp33 domain HSP33 redox switch-like 11
Clathrin adaptor appendage domain Subdomain of clathrin and coatomer appendage domain 11
F-box domain HCP-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
L domain-like Growth factor receptor domain 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
EF-hand Phosphoglycerate mutase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Metallo-dependent hydrolases 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Eukaryotic RPB5 N-terminal domain RPB5-like RNA polymerase subunit 11
Oxygen-evolving enhancer protein 3, Cyclophilin-like 11
Chaperone J-domain E set domains 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Homing endonucleases Translation proteins 11
ARM repeat Hect, E3 ligase catalytic domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
Fibronectin type III P-loop containing nucleoside triphosphate hydrolases 11
S13-like H2TH domain SAP domain 11
RNA-binding domain, RBD PABC (PABP) domain 11
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 11
Formiminotransferase domain of formiminotransferase-cyclodeaminase. Formiminotransferase domain of formiminotransferase-cyclodeaminase. 11
Glutathione synthetase ATP-binding domain-like Aspartate/ornithine carbamoyltransferase 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
SNARE fusion complex SNARE fusion complex 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Adenine nucleotide alpha hydrolases-like Thioredoxin-like 11
WD40 repeat-like Ribonuclease H-like 11
FAD-binding/transporter-associated domain-like Molybdenum cofactor-binding domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Thioredoxin-like 11
beta-sandwich domain of Sec23/24 beta-sandwich domain of Sec23/24 11
DAK1/DegV-like DhaL-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) WD40 repeat-like 11
Ubiquitin-like Cytochrome c 11
alpha/beta-Hydrolases Heat shock protein 70kD (HSP70), peptide-binding domain 11
SMAD/FHA domain FKBP-like 11
Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), beta-barrel domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
GST C-terminal domain-like Nucleic acid-binding proteins 11
EF-hand PH domain-like 11
Protein kinase-like (PK-like) UBA-like 11
Starch-binding domain-like Glutathione synthetase ATP-binding domain-like 11
DNA-glycosylase DNA-glycosylase 11
NTF2-like NTF2-like 11
HAD-like NAD(P)-binding Rossmann-fold domains 11
Acyl-CoA binding protein Ankyrin repeat 11
Protein kinase-like (PK-like) Duplicated hybrid motif 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) Starch-binding domain-like 11
Tricorn protease domain 2 Hedgehog/intein (Hint) domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
FAD/NAD(P)-binding domain EF-hand 11
NSFL1 (p97 ATPase) cofactor p47, SEP domain Ubiquitin-like 11
PriA/YqbF domain GINS helical bundle-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Methylglyoxal synthase-like 11
Class I glutamine amidotransferase-like Metallo-dependent hydrolases 11
Galactose mutarotase-like (Trans)glycosidases 11
Thioredoxin-like "Winged helix" DNA-binding domain 11
WD40 repeat-like Cysteine proteinases 11
PurS-like Class I glutamine amidotransferase-like 11
vWA-like SAP domain 11
Carbamate kinase-like PUA domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Starch-binding domain-like E set domains 11
Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) 11
CO dehydrogenase flavoprotein C-terminal domain-like Molybdenum cofactor-binding domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Hypothetical protein YjiA, C-terminal domain Hypothetical protein YjiA, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
E set domains AMPKBI-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Metallo-dependent phosphatases Metallo-dependent phosphatases 11
Nucleic acid-binding proteins TPR-like 11
Staphylococcal nuclease Staphylococcal nuclease 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Cysteine proteinases Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type I DNA topoisomerase 11
MetI-like MetI-like 11
vWA-like Terpenoid cyclases/Protein prenyltransferases 11
F-box domain WD40 repeat-like 11
RNA-binding domain, RBD SET domain 11
RING/U-box RNA-binding domain, RBD 11
C-terminal domain of adenylylcyclase associated protein Formin homology 2 domain (FH2 domain) 11
Protein kinase-like (PK-like) PLP-dependent transferases 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
HCP-like TPR-like 11
SNARE-like Domain of the SRP/SRP receptor G-proteins 11
BRCT domain DNA/RNA polymerases 11
RING/U-box RING/U-box 11
Periplasmic binding protein-like II GlnB-like 11
Lipovitellin-phosvitin complex, superhelical domain ARM repeat 11
Activator of Hsp90 ATPase, Aha1 Bet v1-like 11
Cryptochrome/photolyase FAD-binding domain Cryptochrome/photolyase FAD-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
cAMP-binding domain-like Mitochondrial carrier 11
P-loop containing nucleoside triphosphate hydrolases Hedgehog/intein (Hint) domain 11
FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) Protein kinase-like (PK-like) 11
P-loop containing nucleoside triphosphate hydrolases Cytidine deaminase-like 11
Cysteine proteinases cAMP-binding domain-like 11
HSP20-like chaperones HCP-like 11
Class I glutamine amidotransferase-like Ribulose-phoshate binding barrel 11
Ribosomal L27 protein-like Eukaryotic type KH-domain (KH-domain type I) 11
N-terminal domain of MutM-like DNA repair proteins SAP domain 11
Cysteine proteinases EF-hand 11
Chaperone J-domain ARM repeat 11
WW domain WW domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
DNA repair protein MutS, domain III SMR domain-like 11
cAMP-binding domain-like cAMP-binding domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
ACT-like Protein kinase-like (PK-like) 11
Chaperone J-domain Glucocorticoid receptor-like (DNA-binding domain) 11
Adenine nucleotide alpha hydrolases-like Molybdenum cofactor biosynthesis proteins 11
RNI-like L domain-like 11
beta-sandwich domain of Sec23/24 Cysteine proteinases 11
Chaperone J-domain CSL zinc finger 11
Dihydrofolate reductase-like Thymidylate synthase/dCMP hydroxymethylase 11
PLP-dependent transferases PLP-dependent transferases 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase N-terminal domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like Thiolase-like 11
NHL repeat WD40 repeat-like 11
P-loop containing nucleoside triphosphate hydrolases HAND domain of the nucleosome remodeling ATPase ISWI 11
TATA-box binding protein-like TATA-box binding protein-like 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
L domain-like EF-hand 11
ApbE-like FMN-binding split barrel 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain PreATP-grasp domain 11
Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Taf5 N-terminal domain-like WD40 repeat-like 11
Surp module (SWAP domain) Surp module (SWAP domain) 11
Urease, beta-subunit Composite domain of metallo-dependent hydrolases 11
Ubiquitin-like Cysteine proteinases 11
P-loop containing nucleoside triphosphate hydrolases RNase III domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Radical SAM enzymes Acyl-CoA N-acyltransferases (Nat) 11
PreATP-grasp domain post-HMGL domain-like 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
CAD & PB1 domains TPR-like 11
Class I glutamine amidotransferase-like Aspartate/ornithine carbamoyltransferase 11
AN1-like Zinc finger AN1-like Zinc finger 11
P-loop containing nucleoside triphosphate hydrolases C2 domain (Calcium/lipid-binding domain, CaLB) 11
F-box domain Clavaminate synthase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Aspartate/ornithine carbamoyltransferase 11
Chaperone J-domain Sec63 N-terminal domain-like 11
CBS-domain pair MgtE membrane domain-like 11
vWA-like SPOC domain-like 11
RING/U-box UBA-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Ubiquitin-like FKBP-like 11
TGS-like Class II aaRS and biotin synthetases 11
WD40 repeat-like C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 11
CO dehydrogenase flavoprotein C-terminal domain-like CO dehydrogenase molybdoprotein N-domain-like 11
BRCT domain Homeodomain-like 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Glutathione synthetase ATP-binding domain-like 11
Ypt/Rab-GAP domain of gyp1p PGBD-like 11
OsmC-like OsmC-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
SufE/NifU Adenine nucleotide alpha hydrolases-like 11
MM3350-like HIT/MYND zinc finger-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
CCCH zinc finger RING/U-box 11
Dom34/Pelota N-terminal domain-like L30e-like 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Urease, gamma-subunit Metallo-dependent hydrolases 11
FAD/NAD(P)-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Protein kinase-like (PK-like) beta-lactamase/transpeptidase-like 11
Nucleic acid-binding proteins eIF-2-alpha, C-terminal domain 11
FKBP-like Triger factor/SurA peptide-binding domain-like 11
PurS-like FGAM synthase PurL, linker domain 11
cAMP-binding domain-like EF-hand 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
HAND domain of the nucleosome remodeling ATPase ISWI Homeodomain-like 11
Putative DNA-binding domain PheT/TilS domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Carbamoyl phosphate synthetase, large subunit connection domain 11
CBS-domain pair Hedgehog/intein (Hint) domain 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases CYTH-like phosphatases 11
E set domains TPR-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
IpsF-like all-alpha NTP pyrophosphatases 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Aldolase NAD(P)-binding Rossmann-fold domains 11
Ankyrin repeat RCC1/BLIP-II 11
Zn-dependent exopeptidases Transferrin receptor-like dimerisation domain 11
Kelch motif POZ domain 11
FYVE/PHD zinc finger Bromodomain 11
Aldolase Single hybrid motif 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
CBS-domain pair TPR-like 11
Nucleotide-diphospho-sugar transferases ARM repeat 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
RNA-binding domain, RBD R3H domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Chaperone J-domain beta-beta-alpha zinc fingers 11
Class II aaRS and biotin synthetases HD-domain/PDEase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
ISP transmembrane anchor ISP domain 11
Homing endonucleases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
alpha/beta-Hydrolases TPR-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Aspartate/ornithine carbamoyltransferase 11
Aldolase post-HMGL domain-like 11
RuvA domain 2-like BRCT domain 11
C2 domain (Calcium/lipid-binding domain, CaLB) Phospholipase D/nuclease 11
Translation proteins Translation proteins 11
PH domain-like alpha/beta-Hydrolases 11
WD40 repeat-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
Urease, gamma-subunit Composite domain of metallo-dependent hydrolases 11
Methylglyoxal synthase-like Metallo-dependent hydrolases 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Cysteine proteinases Mitochondrial carrier 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
"Winged helix" DNA-binding domain Ribonuclease H-like 11
SufE/NifU BolA-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
FYSH domain Hypothetical protein AF0491, middle domain 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
FYVE/PHD zinc finger EF-hand 11
S-adenosyl-L-methionine-dependent methyltransferases POZ domain 11
RING/U-box Protein kinase-like (PK-like) 11
TATA-box binding protein-like DNA-glycosylase 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
E set domains Concanavalin A-like lectins/glucanases 11
Thioredoxin-like ERP29 C domain-like 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 11
Nucleoside diphosphate kinase, NDK P-loop containing nucleoside triphosphate hydrolases 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
Chaperone J-domain Homeodomain-like 11
TGS-like ThrRS/AlaRS common domain 11
PGBD-like PGBD-like 11
WD40 repeat-like Zn-dependent exopeptidases 11
PEP carboxykinase-like PEP carboxykinase-like 11
vWA-like Cysteine-rich domain 11
Trimeric LpxA-like enzymes ARM repeat 11
FYVE/PHD zinc finger UBA-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
Class I glutamine amidotransferase-like ADC synthase 11
Thioredoxin-like TPR-like 11
SAP domain DNase I-like 11
RCC1/BLIP-II Hect, E3 ligase catalytic domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Thioredoxin-like UBA-like 11
PH domain-like BEACH domain 11
Galactose-binding domain-like Kelch motif 11
(Trans)glycosidases (Trans)glycosidases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
UBA-like XPC-binding domain 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
PurS-like PurM C-terminal domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Protein kinase-like (PK-like) PP2C-like 11
PH domain-like BSD domain-like 11
Acid proteases UBA-like 11
Glycerol-3-phosphate (1)-acyltransferase EF-hand 11
Carbohydrate phosphatase Protein kinase-like (PK-like) 11
Surp module (SWAP domain) Ubiquitin-like 11
PPK N-terminal domain-like PHP14-like 11
WW domain FF domain 11
EF-hand C2 domain (Calcium/lipid-binding domain, CaLB) 11
MIT domain RING/U-box 11
DNA-glycosylase Nudix 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) Retrovirus zinc finger-like domains 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PLC-like phosphodiesterases C2 domain (Calcium/lipid-binding domain, CaLB) 11
alpha/beta-Hydrolases Enolase N-terminal domain-like 11

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