SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Glaciecola nitratireducens FR1064

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

752 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Nucleotide cyclase EAL domain-like 3818
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3624
PYP-like sensor domain (PAS domain) Nucleotide cyclase 2415
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2113
PYP-like sensor domain (PAS domain) EAL domain-like 2012
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 2018
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 187
Homodimeric domain of signal transducing histidine kinase CheY-like 1816
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 181
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1715
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 166
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 153
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 156
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1511
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 156
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 156
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 156
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1511
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 145
CheY-like C-terminal effector domain of the bipartite response regulators 132
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 126
Actin-like ATPase domain Actin-like ATPase domain 124
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 124
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 115
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 113
CheY-like Nucleotide cyclase 105
Thioredoxin-like GST C-terminal domain-like 101
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 106
PYP-like sensor domain (PAS domain) CheY-like 108
P-loop containing nucleoside triphosphate hydrolases Translation proteins 96
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 94
GroES-like NAD(P)-binding Rossmann-fold domains 92
CheY-like Homeodomain-like 94
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 87
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 83
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 87
ACT-like ACT-like 85
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 82
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 86
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 83
Thiolase-like Thiolase-like 81
GAF domain-like Nucleotide cyclase 75
CheY-like Histidine-containing phosphotransfer domain, HPT domain 77
(Trans)glycosidases Glycosyl hydrolase domain 77
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
CheY-like P-loop containing nucleoside triphosphate hydrolases 72
TPR-like TPR-like 77
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 73
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 64
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 63
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 64
DPP6 N-terminal domain-like alpha/beta-Hydrolases 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
CheY-like CheY-like 55
GAF domain-like EAL domain-like 53
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 54
PreATP-grasp domain Rudiment single hybrid motif 52
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
Translation proteins EF-G C-terminal domain-like 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 52
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 43
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 43
HAD-like Calcium ATPase, transmembrane domain M 42
PurM N-terminal domain-like PurM C-terminal domain-like 42
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 41
CheY-like EAL domain-like 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Calcium ATPase, transduction domain A HAD-like 42
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 43
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 43
EAL domain-like HD-domain/PDEase-like 41
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
Single hybrid motif CoA-dependent acyltransferases 43
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 44
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 42
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 41
Nucleic acid-binding proteins Nucleic acid-binding proteins 43
Alpha-L RNA-binding motif Pseudouridine synthase 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
GAF domain-like GAF domain-like 42
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 41
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 42
Single hybrid motif Single hybrid motif 32
TPR-like HCP-like 33
E set domains (Trans)glycosidases 33
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
FKBP-like Triger factor/SurA peptide-binding domain-like 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
E set domains Glycosyl hydrolase domain 33
Nucleic acid-binding proteins RuvA domain 2-like 33
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
PDZ domain-like ClpP/crotonase 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
GAF domain-like PYP-like sensor domain (PAS domain) 33
ClpP/crotonase ClpP/crotonase 32
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Starch-binding domain-like Porins 32
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 32
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
TPR-like P-loop containing nucleoside triphosphate hydrolases 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Aconitase iron-sulfur domain LeuD/IlvD-like 33
Nucleotidyltransferase HD-domain/PDEase-like 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 33
CheW-like CheY-like 31
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
PDZ domain-like PDZ domain-like 33
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Cytochrome c Cytochrome c 33
Calcium-dependent phosphotriesterase Nucleotide cyclase 33
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 31
Translation proteins SH3-like domain Nucleic acid-binding proteins 32
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 32
Homeodomain-like Homeodomain-like 33
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 32
Trypsin-like serine proteases PDZ domain-like 33
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Calcium-dependent phosphotriesterase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Calcium-dependent phosphotriesterase EAL domain-like 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 21
ACT-like NAD(P)-binding Rossmann-fold domains 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Carbamate kinase-like PUA domain-like 21
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
Zinc beta-ribbon Zinc beta-ribbon 22
TPR-like Nucleotide cyclase 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
(Trans)glycosidases Galactose mutarotase-like 22
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 21
Homodimeric domain of signal transducing histidine kinase CheW-like 21
SGNH hydrolase TPR-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
HMA, heavy metal-associated domain HAD-like 21
Heme-dependent peroxidases Heme-dependent peroxidases 21
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 22
Calcium-dependent phosphotriesterase PYP-like sensor domain (PAS domain) 22
Carbamate kinase-like ACT-like 22
MgtE N-terminal domain-like MgtE membrane domain-like 21
Aldolase post-HMGL domain-like 22
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 22
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 22
CheY-like CheC-like 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
TPR-like LysM domain 22
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 21
E set domains E set domains 22
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
DNA methylase specificity domain DNA methylase specificity domain 21
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 21
"Winged helix" DNA-binding domain GAF domain-like 21
MgtE N-terminal domain-like CBS-domain pair 21
Tricorn protease N-terminal domain ClpP/crotonase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 21
Ribonuclease H-like DNA/RNA polymerases 22
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
Macro domain-like Zn-dependent exopeptidases 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
TSP type-3 repeat TSP type-3 repeat 22
Nucleotidyltransferase TGS-like 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Calcium-dependent phosphotriesterase CheY-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 21
CBS-domain pair MgtE membrane domain-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 21
HD-domain/PDEase-like ACT-like 22
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 21
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases HRDC-like 22
Calcium-dependent phosphotriesterase Histidine-containing phosphotransfer domain, HPT domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Homeodomain-like 22
MetI-like MetI-like 21
Actin-like ATPase domain HD-domain/PDEase-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
Tricorn protease N-terminal domain PDZ domain-like 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
Nucleotidyltransferase ACT-like 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Zn-dependent exopeptidases Class I glutamine amidotransferase-like 22
Calcium-dependent phosphotriesterase Homodimeric domain of signal transducing histidine kinase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
L30e-like alpha/beta knot 21
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 21
HD-domain/PDEase-like TGS-like 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 21
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 22
CheY-like Methylesterase CheB, C-terminal domain 21
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 22
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
DsbC/DsbG N-terminal domain-like Thioredoxin-like 21
YbaK/ProRS associated domain Class II aaRS ABD-related 11
ALDH-like ALDH-like 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
Methylesterase CheB, C-terminal domain Nucleotide cyclase 11
CheC-like Surface presentation of antigens (SPOA) 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
NHL repeat Nucleotide cyclase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
HAMP domain-like EAL domain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
DPP6 N-terminal domain-like ClpP/crotonase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Nucleic acid-binding proteins PheT/TilS domain 11
Periplasmic binding protein-like I Periplasmic binding protein-like I 11
Pili subunits GspK insert domain-like 11
Restriction endonuclease-like Zinc beta-ribbon 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Protein kinase-like (PK-like) C-type lectin-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
DPP6 N-terminal domain-like PDZ domain-like 11
Cna protein B-type domain Sporulation related repeat 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PreATP-grasp domain PreATP-grasp domain 11
Trigger factor ribosome-binding domain FKBP-like 11
HAD-like Ribosomal protein S5 domain 2-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Periplasmic binding protein-like II Lysozyme-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Putative DNA-binding domain Translation proteins 11
RuvA domain 2-like JAB1/MPN domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
N-acetylmuramoyl-L-alanine amidase-like beta-lactamase/transpeptidase-like 11
Ribonuclease H-like HRDC-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Acyl-CoA N-acyltransferases (Nat) 3-carboxy-cis,cis-mucoante lactonizing enzyme 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain EAL domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
PIN domain-like Ribonuclease H-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Galactose-binding domain-like Galactose mutarotase-like 11
4Fe-4S ferredoxins ADC-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like EspE N-terminal domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Quinoprotein alcohol dehydrogenase-like PYP-like sensor domain (PAS domain) 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
2Fe-2S ferredoxin-like ADC-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Metalloproteases ("zincins"), catalytic domain Metalloproteases ("zincins"), catalytic domain 11
PheT/TilS domain Putative DNA-binding domain 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
TATA-box binding protein-like DNA-glycosylase 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
PLP-dependent transferases PLP-dependent transferases 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Metallo-hydrolase/oxidoreductase SCP-like 11
ClpP/crotonase NfeD domain-like 11
C-terminal effector domain of the bipartite response regulators TPR-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Nucleotidyltransferase PHP domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Acetyl-CoA synthetase-like Heme oxygenase-like 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
PreATP-grasp domain Single hybrid motif 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Aldolase AFP III-like domain 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
GAF domain-like Phosphohistidine domain 11
Subtilisin-like TSP type-3 repeat 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Barwin-like endoglucanases Sporulation related repeat 11
cAMP-binding domain-like CBS-domain pair 11
C-terminal effector domain of the bipartite response regulators DPP6 N-terminal domain-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like CheY-like 11
Flavoproteins Riboflavin synthase domain-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Histidine-containing phosphotransfer domain, HPT domain HD-domain/PDEase-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
PA domain Subtilisin-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
LysM domain LysM domain 11
Cupredoxins Cytochrome c 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
vWA-like TPR-like 11
Translation proteins Translation proteins 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Hsp33 domain HSP33 redox switch-like 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
Cysteine proteinases Glutathione synthetase ATP-binding domain-like 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
DNA polymerase beta, N-terminal domain-like RuvA domain 2-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
CarD-like TRCF domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
TGS-like Class II aaRS and biotin synthetases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Galactose-binding domain-like (Trans)glycosidases 11
NagB/RpiA/CoA transferase-like Acyl-CoA N-acyltransferases (Nat) 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
TSP type-3 repeat OmpA-like 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Periplasmic binding protein-like II Nucleotide cyclase 11
vWA-like Quinoprotein alcohol dehydrogenase-like 11
PYP-like sensor domain (PAS domain) PP2C-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
PIN domain-like DNA/RNA polymerases 11
Thioredoxin-like Thioredoxin-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Alkaline phosphatase-like DNase I-like 11
Ammonium transporter PYP-like sensor domain (PAS domain) 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
alpha/beta-Hydrolases Cyclophilin-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Quinoprotein alcohol dehydrogenase-like EAL domain-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
DPP6 N-terminal domain-like Composite domain of metallo-dependent hydrolases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Thioredoxin-like TPR-like 11
PA domain Zn-dependent exopeptidases 11
YjeF N-terminal domain-like Ribokinase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Tricorn protease domain 2 PDZ domain-like 11
Homeodomain-like TATA-box binding protein-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
FliG FliG 11
RuvA domain 2-like PHP domain-like 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Starch-binding domain-like Glycosyl hydrolase domain 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
Homeodomain-like SIS domain 11
PurS-like FGAM synthase PurL, linker domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
PurS-like Class I glutamine amidotransferase-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Concanavalin A-like lectins/glucanases TSP type-3 repeat 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide cyclase 11
TGS-like ACT-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
DNA-glycosylase Nudix 11
FKBP-like FKBP-like 11
Tricorn protease N-terminal domain DPP6 N-terminal domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases EreA/ChaN-like 11
Nucleotidylyl transferase tRNA-binding arm 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
UDP-Glycosyltransferase/glycogen phosphorylase S-adenosyl-L-methionine-dependent methyltransferases 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
HAMP domain-like Nucleotide cyclase 11
Periplasmic binding protein-like II ACT-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
OMPA-like OmpA-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
GroEL equatorial domain-like GroEL equatorial domain-like 11
"Winged helix" DNA-binding domain HRDC-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Aldolase Single hybrid motif 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Nucleic acid-binding proteins GAD domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Bacterial muramidases Lysozyme-like 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
Homeodomain-like DNA-glycosylase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Nucleotide cyclase 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
DNA clamp DNA clamp 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Glutathione synthetase ATP-binding domain-like Phosphotyrosine protein phosphatases I 11
RuvA domain 2-like Nucleotidyltransferase 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Phase 1 flagellin Phase 1 flagellin 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
OMPA-like TSP type-3 repeat 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PLP-dependent transferases SufE/NifU 11
ACT-like PYP-like sensor domain (PAS domain) 11
PKD domain PKD domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Lysozyme-like PGBD-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Galactose mutarotase-like E set domains 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
MFS general substrate transporter MFS general substrate transporter 11
YrdC/RibB RibA-like 11
FAS1 domain FAS1 domain 11
RNase III domain-like dsRNA-binding domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Nucleic acid-binding proteins BRCT domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
HisI-like all-alpha NTP pyrophosphatases 11
NHL repeat EAL domain-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
Sensory domain-like CheY-like 11
Tricorn protease domain 2 ClpP/crotonase 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Zn-dependent exopeptidases LysM domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Tex N-terminal region-like RuvA domain 2-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 11
HRDC-like HRDC-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Regulatory protein AraC Homeodomain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Ammonium transporter Nucleotide cyclase 11
TGS-like ThrRS/AlaRS common domain 11
PPK N-terminal domain-like PHP14-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
Methylesterase CheB, C-terminal domain EAL domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
TerB-like Chaperone J-domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
PP2C-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Quinoprotein alcohol dehydrogenase-like Nucleotide cyclase 11
GspK insert domain-like GspK insert domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
PUA domain-like alpha/beta knot 11
PurS-like PurM C-terminal domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Periplasmic binding protein-like II GlnB-like 11
HAMP domain-like CheY-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Tricorn protease N-terminal domain Tricorn protease domain 2 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
Rudiment single hybrid motif Single hybrid motif 11
YWTD domain YWTD domain 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Homeodomain-like Probable bacterial effector-binding domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
TPR-like TolA/TonB C-terminal domain 11
Ribokinase-like Nucleotidylyl transferase 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
NTF2-like Sec-C motif 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
PrpR receptor domain-like Homeodomain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
TGS-like Class II aaRS ABD-related 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PGBD-like beta-lactamase/transpeptidase-like 11
YajQ-like YajQ-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Lysozyme-like LysM domain 11
Translation proteins ThrRS/AlaRS common domain 11
NHL repeat PYP-like sensor domain (PAS domain) 11
GIY-YIG endonuclease RuvA domain 2-like 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
RmlC-like cupins Homeodomain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Translation proteins PRC-barrel domain 11
RmlC-like cupins RmlC-like cupins 11
Pseudouridine synthase PUA domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Acyl-CoA N-acyltransferases (Nat) Thioesterase/thiol ester dehydrase-isomerase 11
Tricorn protease N-terminal domain alpha/beta-Hydrolases 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Starch-binding domain-like E set domains 11
ACT-like Homeodomain-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Zn-dependent exopeptidases Fibronectin type III 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
S-adenosyl-L-methionine-dependent methyltransferases EAL domain-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Peptide methionine sulfoxide reductase Mss4-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
DPP6 N-terminal domain-like Metallo-dependent hydrolases 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
CalX-like CalX-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Class II aaRS and biotin synthetases Translation proteins 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Calcium-dependent phosphotriesterase NHL repeat 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
DNase I-like HAD-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
PurS-like PurM N-terminal domain-like 11
ACT-like Formyltransferase 11
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 11
RuvA domain 2-like RuvA domain 2-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Zinc beta-ribbon DNA primase core 11
FAD-linked oxidoreductase ALDH-like 11
Ribonuclease H-like RuvA domain 2-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
CheY-like TPR-like 11
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Periplasmic binding protein-like II CheY-like 11
CheY-like PP2C-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Galactose mutarotase-like Galactose mutarotase-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
PilZ domain-like PilZ domain-like 11
Calcium-dependent phosphotriesterase Quinoprotein alcohol dehydrogenase-like 11
alpha/beta-Hydrolases Nucleotide cyclase 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Tex N-terminal region-like Ribonuclease H-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Chorismate mutase II ACT-like 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
PHP14-like Phospholipase D/nuclease 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Homodimeric domain of signal transducing histidine kinase Homeodomain-like 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Cysteine proteinases PreATP-grasp domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Starch-binding domain-like (Trans)glycosidases 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
GroES-like GroES-like 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
Formyltransferase FMT C-terminal domain-like 11
RuvA domain 2-like BRCT domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Ammonium transporter EAL domain-like 11
PRC-barrel domain PRC-barrel domain 11
PKD domain Subtilisin-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
post-HMGL domain-like Single hybrid motif 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11

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