SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Francisella noatunensis subsp. orientalis str. Toba 04

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

418 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 108
Actin-like ATPase domain Actin-like ATPase domain 82
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 74
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 75
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 61
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 53
PreATP-grasp domain Rudiment single hybrid motif 42
Thiolase-like Thiolase-like 41
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 42
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 43
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 43
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 42
P-loop containing nucleoside triphosphate hydrolases Translation proteins 44
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 42
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 42
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
Acetyl-CoA synthetase-like ACP-like 33
Thioredoxin-like GST C-terminal domain-like 31
Alpha-L RNA-binding motif Pseudouridine synthase 31
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 33
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 32
CoA-dependent acyltransferases CoA-dependent acyltransferases 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 33
Acetyl-CoA synthetase-like CoA-dependent acyltransferases 33
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 33
ACP-like CoA-dependent acyltransferases 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
ACP-like ACP-like 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Single hybrid motif Single hybrid motif 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
HD-domain/PDEase-like Nucleotidyltransferase 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
CoA-dependent acyltransferases alpha/beta-Hydrolases 22
PLP-binding barrel Alanine racemase C-terminal domain-like 21
Translation proteins EF-G C-terminal domain-like 22
Nucleic acid-binding proteins RuvA domain 2-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Single hybrid motif CoA-dependent acyltransferases 21
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
ACP-like alpha/beta-Hydrolases 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
ACT-like ACT-like 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
Carbamate kinase-like ACT-like 22
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
E set domains (Trans)glycosidases 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 21
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
HD-domain/PDEase-like TGS-like 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 22
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Nucleotidyltransferase TGS-like 22
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
PreATP-grasp domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Zinc beta-ribbon DNA primase core 11
FKBP-like FKBP-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Bacterial muramidases Lysozyme-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
L30e-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
TGS-like Class II aaRS and biotin synthetases 11
Nucleotidylyl transferase tRNA-binding arm 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Triger factor/SurA peptide-binding domain-like FKBP-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Macro domain-like Zn-dependent exopeptidases 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
SAICAR synthase-like PreATP-grasp domain 11
Translation proteins Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Thioredoxin-like Ferritin-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
ALDH-like ALDH-like 11
Bacterial luciferase-like ACP-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Translation proteins PRC-barrel domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Translation proteins ThrRS/AlaRS common domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Acyl-CoA binding protein ClpP/crotonase 11
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleic acid-binding proteins BRCT domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
beta-lactamase/transpeptidase-like Ankyrin repeat 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
RNase III domain-like dsRNA-binding domain-like 11
Acetyl-CoA synthetase-like ADC synthase 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Nucleic acid-binding proteins GAD domain-like 11
PurS-like FGAM synthase PurL, linker domain 11
PreATP-grasp domain PreATP-grasp domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK Dihydropteroate synthetase-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
GroES-like NAD(P)-binding Rossmann-fold domains 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
PurS-like Class I glutamine amidotransferase-like 11
E set domains Glycosyl hydrolase domain 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Zinc beta-ribbon Zinc beta-ribbon 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
HCP-like HCP-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
OMPA-like OmpA-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Acid phosphatase/Vanadium-dependent haloperoxidase Aminoacid dehydrogenase-like, N-terminal domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Mss4-like Peptide methionine sulfoxide reductase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
MetI-like MetI-like 11
CoA-dependent acyltransferases Bacterial luciferase-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
EF-hand Ankyrin repeat 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Calcium ATPase, transmembrane domain M Metal cation-transporting ATPase, ATP-binding domain N 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
YrdC/RibB RibA-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
PIN domain-like DNA/RNA polymerases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
HD-domain/PDEase-like ACT-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
TGS-like Class II aaRS ABD-related 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Bacterial luciferase-like alpha/beta-Hydrolases 11
Putative DNA-binding domain Translation proteins 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
SAICAR synthase-like Glutathione synthetase ATP-binding domain-like 11
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
TGS-like ThrRS/AlaRS common domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
TPR-like TPR-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Class II aaRS and biotin synthetases GAD domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Formyltransferase FMT C-terminal domain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
(Trans)glycosidases Glycosyl hydrolase domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PUA domain-like alpha/beta knot 11
Acyl-CoA binding protein 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Acid phosphatase/Vanadium-dependent haloperoxidase NAD(P)-binding Rossmann-fold domains 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PIN domain-like Ribonuclease H-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
FAD-linked oxidoreductase ALDH-like 11
Acyl-CoA binding protein NAD(P)-binding Rossmann-fold domains 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
TGS-like ACT-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
EF-hand beta-lactamase/transpeptidase-like 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
Class II aaRS and biotin synthetases Translation proteins 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Nucleotidylyl transferase Nudix 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
RuvA domain 2-like BRCT domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Globin-like Riboflavin synthase domain-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
PurS-like PurM C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Acetyl-CoA synthetase-like D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
P-loop containing nucleoside triphosphate hydrolases MOP-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Acetyl-CoA synthetase-like Bacterial luciferase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
DeoB insert domain-like Alkaline phosphatase-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Phosphoenolpyruvate/pyruvate domain Phosphoenolpyruvate/pyruvate domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
DNA clamp DNA clamp 11
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Aldolase AFP III-like domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II ACT-like 11
SAICAR synthase-like Rudiment single hybrid motif 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Nucleotidyltransferase ACT-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
PurS-like PurM N-terminal domain-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
HisI-like all-alpha NTP pyrophosphatases 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
"Winged helix" DNA-binding domain GAF domain-like 11
CheY-like C-terminal effector domain of the bipartite response regulators 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
PheT/TilS domain Putative DNA-binding domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11

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