SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Desulfomonile tiedjei DSM 6799

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

828 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 9853
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 7645
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 7555
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 6939
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 6424
CheY-like PYP-like sensor domain (PAS domain) 3931
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 3829
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 3618
PYP-like sensor domain (PAS domain) Homeodomain-like 3416
Homodimeric domain of signal transducing histidine kinase CheY-like 3224
P-loop containing nucleoside triphosphate hydrolases CheY-like 2910
CheY-like Homeodomain-like 256
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 253
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2312
TPR-like TPR-like 2210
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 208
Thiolase-like Thiolase-like 184
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 185
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 175
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 174
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 163
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 163
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 1612
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 163
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 163
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 163
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 163
Actin-like ATPase domain Actin-like ATPase domain 156
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 153
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 156
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 155
GroES-like NAD(P)-binding Rossmann-fold domains 143
GAF domain-like Homeodomain-like 139
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 133
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 131
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 128
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1212
CheY-like CheY-like 1110
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 113
GAF domain-like Homodimeric domain of signal transducing histidine kinase 1111
Calcium ATPase, transduction domain A HAD-like 104
Ankyrin repeat Ankyrin repeat 106
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 106
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 102
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 106
P-loop containing nucleoside triphosphate hydrolases Translation proteins 106
PYP-like sensor domain (PAS domain) GAF domain-like 99
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 95
Calcium ATPase, transmembrane domain M HAD-like 93
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 93
HAMP domain-like PYP-like sensor domain (PAS domain) 96
Histidine-containing phosphotransfer domain, HPT domain CheY-like 87
CheY-like GAF domain-like 85
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 87
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 85
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 85
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 71
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 75
alpha-helical ferredoxin Nucleotide-binding domain 77
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
lambda repressor-like DNA-binding domains RmlC-like cupins 73
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
PurM N-terminal domain-like PurM C-terminal domain-like 62
Homeodomain-like Homeodomain-like 63
Lysozyme-like beta-lactamase/transpeptidase-like 63
Nucleotide-binding domain 4Fe-4S ferredoxins 66
Protein kinase-like (PK-like) TPR-like 65
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 63
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 62
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 64
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 52
Trypsin-like serine proteases PDZ domain-like 54
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 52
Translation proteins EF-G C-terminal domain-like 52
CheY-like Nucleotide cyclase 52
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 52
HAMP domain-like Nucleotide cyclase 52
EF-G C-terminal domain-like EF-G C-terminal domain-like 52
CheY-like C-terminal effector domain of the bipartite response regulators 52
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 52
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 55
FKBP-like Triger factor/SurA peptide-binding domain-like 54
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 52
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 55
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 52
ACT-like ACT-like 53
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 54
CheY-like HD-domain/PDEase-like 53
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 42
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 43
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 41
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 42
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 43
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 41
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 43
cAMP-binding domain-like P-loop containing nucleoside triphosphate hydrolases 42
ClpP/crotonase ClpP/crotonase 41
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 43
MoeA N-terminal region -like MoeA C-terminal domain-like 43
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 41
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 42
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 42
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 43
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 41
Nqo1 middle domain-like Nqo1C-terminal domain-like 43
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 43
Ferritin-like Rubredoxin-like 41
FMN-binding split barrel UbiD C-terminal domain-like 43
P-loop containing nucleoside triphosphate hydrolases 4Fe-4S ferredoxins 42
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 43
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 43
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 44
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 41
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 42
GAF domain-like GAF domain-like 44
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 41
2Fe-2S ferredoxin-like Actin-like ATPase domain 41
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 42
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 44
P-loop containing nucleoside triphosphate hydrolases TPR-like 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Protein kinase-like (PK-like) cAMP-binding domain-like 31
PUA domain-like Ribosomal protein S5 domain 2-like 32
HlyD-like secretion proteins HlyD-like secretion proteins 32
Thiolase-like NAD(P)-binding Rossmann-fold domains 33
Nitrite and sulphite reductase 4Fe-4S domain-like 4Fe-4S ferredoxins 32
Translation proteins Ribosomal protein S5 domain 2-like 31
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 33
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 32
Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 31
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 32
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
RuvA domain 2-like Nucleic acid-binding proteins 33
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
E set domains (Trans)glycosidases 33
alpha-helical ferredoxin 4Fe-4S ferredoxins 33
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 31
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 31
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 31
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 31
2Fe-2S ferredoxin-like alpha-helical ferredoxin 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
NagB/RpiA/CoA transferase-like Acyl-CoA N-acyltransferases (Nat) 31
Thioredoxin-like Nqo1 middle domain-like 32
FMN-linked oxidoreductases 4Fe-4S ferredoxins 32
Thioredoxin-like Nqo1C-terminal domain-like 32
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 32
beta-Roll beta-Roll 33
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 32
Nucleotide-binding domain Nucleotide-binding domain 33
Thioredoxin-like Nqo1 FMN-binding domain-like 32
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 33
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 31
Pentapeptide repeat-like Pentapeptide repeat-like 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 33
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 32
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
PreATP-grasp domain Rudiment single hybrid motif 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 33
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
CheY-like Methylesterase CheB, C-terminal domain 32
2Fe-2S ferredoxin-like ADC-like 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 32
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 31
NAD(P)-binding Rossmann-fold domains ACT-like 32
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 31
4Fe-4S ferredoxins ADC-like 31
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 33
TPR-like WD40 repeat-like 22
PYP-like sensor domain (PAS domain) Nucleotide cyclase 22
Inosine monophosphate dehydrogenase (IMPDH) Inosine monophosphate dehydrogenase (IMPDH) 22
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 21
Zinc beta-ribbon DNA primase core 22
HAMP domain-like CheY-like 22
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 21
ARM repeat cAMP-binding domain-like 22
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 21
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 21
4Fe-4S ferredoxins FMN-dependent nitroreductase-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 21
Nitrite/Sulfite reductase N-terminal domain-like 4Fe-4S ferredoxins 21
Zinc beta-ribbon P-loop containing nucleoside triphosphate hydrolases 22
Serine metabolism enzymes domain ACT-like 21
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 21
Inosine monophosphate dehydrogenase (IMPDH) ACP-like 22
Sensory domain-like PYP-like sensor domain (PAS domain) 22
cAMP-binding domain-like CBS-domain pair 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
UROD/MetE-like Methionine synthase domain 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
Inosine monophosphate dehydrogenase (IMPDH) NAD(P)-binding Rossmann-fold domains 22
Aldolase SIS domain 21
Thioesterase/thiol ester dehydrase-isomerase NAD(P)-binding Rossmann-fold domains 22
FabD/lysophospholipase-like ACP-like 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
Nqo1C-terminal domain-like 4Fe-4S ferredoxins 21
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
TPR-like GAF domain-like 22
Sensory domain-like HAMP domain-like 22
Thiolase-like ACP-like 22
alpha-helical ferredoxin alpha-helical ferredoxin 22
ACP-like NAD(P)-binding Rossmann-fold domains 22
NAD(P)-binding Rossmann-fold domains SCP-like 22
Nucleotidyltransferase ACT-like 22
Quinoprotein alcohol dehydrogenase-like WD40 repeat-like 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 21
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 22
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Thiolase-like FabD/lysophospholipase-like 22
Single hybrid motif CoA-dependent acyltransferases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
SGNH hydrolase Galactose-binding domain-like 21
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 22
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 22
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 21
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 22
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 22
PLP-binding barrel Alanine racemase C-terminal domain-like 22
Protein kinase-like (PK-like) Homodimeric domain of signal transducing histidine kinase 22
Nucleotide-binding domain FAD/NAD(P)-binding domain 22
Nqo1 FMN-binding domain-like 4Fe-4S ferredoxins 21
Protein kinase-like (PK-like) GAF domain-like 22
TK C-terminal domain-like 4Fe-4S ferredoxins 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
HD-domain/PDEase-like ACT-like 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
Inosine monophosphate dehydrogenase (IMPDH) Thiolase-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Inosine monophosphate dehydrogenase (IMPDH) Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 22
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 22
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 22
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 21
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
Translation proteins "Winged helix" DNA-binding domain 22
Prim-pol domain P-loop containing nucleoside triphosphate hydrolases 22
Nqo1 middle domain-like 4Fe-4S ferredoxins 21
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
CheY-like Ribosomal protein S5 domain 2-like 22
Protein kinase-like (PK-like) WD40 repeat-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
4Fe-4S ferredoxins 4Fe-4S ferredoxins 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Alpha-L RNA-binding motif Pseudouridine synthase 21
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
Inosine monophosphate dehydrogenase (IMPDH) FabD/lysophospholipase-like 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
cAMP-binding domain-like 4Fe-4S ferredoxins 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 22
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 21
TPR-like Quinoprotein alcohol dehydrogenase-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
PreATP-grasp domain PreATP-grasp domain 21
(Trans)glycosidases Glycosyl hydrolase domain 22
GroES-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 21
C-type lectin-like PDZ domain-like 22
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 22
Thioredoxin-like 4Fe-4S ferredoxins 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 22
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 21
UROD/MetE-like Cobalamin (vitamin B12)-binding domain 21
P-loop containing nucleoside triphosphate hydrolases vWA-like 21
Protein kinase-like (PK-like) Quinoprotein alcohol dehydrogenase-like 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Protein kinase-like (PK-like) CheY-like 22
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 22
vWA-like OmpA-like 22
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
HAMP domain-like GAF domain-like 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
PDZ domain-like ClpP/crotonase 22
"Winged helix" DNA-binding domain GAF domain-like 21
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 22
alpha-helical ferredoxin FAD/NAD(P)-binding domain 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
YWTD domain Quinoprotein alcohol dehydrogenase-like 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
E set domains Glycosyl hydrolase domain 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 22
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 22
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 22
Multiheme cytochromes Respiratory nitrate reductase 1 gamma chain 21
Ribonuclease H-like DNA/RNA polymerases 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
HD-domain/PDEase-like Nucleotidyltransferase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Acyl-CoA N-acyltransferases (Nat) 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
ADC-like P-loop containing nucleoside triphosphate hydrolases 22
PDZ domain-like PDZ domain-like 21
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 21
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 21
PYP-like sensor domain (PAS domain) HD-domain/PDEase-like 22
GAF domain-like Nucleotide cyclase 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
UDP-Glycosyltransferase/glycogen phosphorylase RmlC-like cupins 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
"Winged helix" DNA-binding domain Chorismate lyase-like 21
PreATP-grasp domain Methylglyoxal synthase-like 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
CBS-domain pair Nucleotidyltransferase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
ABC transporter involved in vitamin B12 uptake, BtuC Iron-dependent repressor protein, dimerization domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
CBS-domain pair ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PRC-barrel domain CBS-domain pair 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
ACT-like 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
MgtE N-terminal domain-like Periplasmic binding protein-like II 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
ClpP/crotonase NfeD domain-like 11
HD-domain/PDEase-like TGS-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Duplicated hybrid motif beta-Roll 11
DNA repair protein MutS, domain III SMR domain-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
Periplasmic binding protein-like II GlnB-like 11
Ribokinase-like Nucleotidylyl transferase 11
UDP-Glycosyltransferase/glycogen phosphorylase Six-hairpin glycosidases 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
TPR-like Thioredoxin-like 11
ACP-like 4'-phosphopantetheinyl transferase 11
Translation proteins ThrRS/AlaRS common domain 11
FAD/NAD(P)-binding domain Thioredoxin-like 11
RuvA domain 2-like BRCT domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases Class I glutamine amidotransferase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Translation proteins 11
Flavoproteins SCP-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleotidylyl transferase tRNA-binding arm 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Aldolase Sensory domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
PLP-dependent transferases P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Multiheme cytochromes ARM repeat 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
SMAD/FHA domain SMAD/FHA domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Rhodanese/Cell cycle control phosphatase Ferritin-like 11
C-type lectin-like C-type lectin-like 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Trimeric LpxA-like enzymes PLP-dependent transferases 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
SMAD/FHA domain GAF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Nucleotide cyclase TPR-like 11
MurD-like peptide ligases, catalytic domain PLP-binding barrel 11
Ribosomal protein L6 Ribosomal protein L6 11
Thiolase-like 4'-phosphopantetheinyl transferase 11
Radical SAM enzymes TPR-like 11
NAD(P)-binding Rossmann-fold domains PLP-dependent transferases 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
MgtE N-terminal domain-like CBS-domain pair 11
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
HAMP domain-like Homeodomain-like 11
Thioredoxin-like Six-hairpin glycosidases 11
TPR-like PDZ domain-like 11
Protein kinase-like (PK-like) Histidine-containing phosphotransfer domain, HPT domain 11
YrdC/RibB RibA-like 11
TGS-like Class II aaRS and biotin synthetases 11
DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain 11
Homeodomain-like TATA-box binding protein-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
TPR-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
L,D-transpeptidase catalytic domain-like NTF2-like 11
TGS-like ThrRS/AlaRS common domain 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
GIY-YIG endonuclease RuvA domain 2-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain PLP-dependent transferases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Prim-pol domain Zinc beta-ribbon 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Nqo1C-terminal domain-like alpha-helical ferredoxin 11
Histidine-containing phosphotransfer domain, HPT domain Rad51 N-terminal domain-like 11
Thioesterase/thiol ester dehydrase-isomerase SCP-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
GroEL equatorial domain-like GroEL apical domain-like 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
"Winged helix" DNA-binding domain Nucleotidyltransferase 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Smc hinge domain Tropomyosin 11
Caspase-like Ankyrin repeat 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
ISP domain FAD/NAD(P)-binding domain 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
EspE N-terminal domain-like Homeodomain-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Translation proteins Translation proteins 11
HMA, heavy metal-associated domain HAD-like 11
NAD(P)-linked oxidoreductase alpha-helical ferredoxin 11
Staphylococcal nuclease Ada DNA repair protein, N-terminal domain (N-Ada 10) 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Sensory domain-like CheY-like 11
4Fe-4S ferredoxins DHS-like NAD/FAD-binding domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
SGNH hydrolase TPR-like 11
SirA-like DsrEFH-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
TPR-like Histidine-containing phosphotransfer domain, HPT domain 11
Periplasmic binding protein-like II CheY-like 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Formyltransferase FMT C-terminal domain-like 11
Fibronectin type III TPR-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Cadherin-like YWTD domain 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Translation proteins PRC-barrel domain 11
P-loop containing nucleoside triphosphate hydrolases Dehydroquinate synthase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
P-loop containing nucleoside triphosphate hydrolases Ribonuclease H-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
SIS domain CBS-domain pair 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
NAD(P)-binding Rossmann-fold domains Trimeric LpxA-like enzymes 11
Nucleotidyltransferase Nucleotidyltransferase 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
4Fe-4S ferredoxins Fe-only hydrogenase 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Ribbon-helix-helix ACT-like 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
ARM repeat TPR-like 11
PUA domain-like alpha/beta knot 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
Nucleic acid-binding proteins BRCT domain 11
MurD-like peptide ligases, catalytic domain Alanine racemase C-terminal domain-like 11
Dihydropteroate synthetase-like Prismane protein-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
TPR-like Bacterial muramidases 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Galactose oxidase, central domain beta-Roll 11
DNA primase core P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases GAD domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
Fibronectin type III Fibronectin type III 11
DHH phosphoesterases CBS-domain pair 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Radical SAM enzymes Acyl-CoA N-acyltransferases (Nat) 11
PurS-like PurM C-terminal domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Nucleic acid-binding proteins NAD(P)-binding Rossmann-fold domains 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Aldolase post-HMGL domain-like 11
P-loop containing nucleoside triphosphate hydrolases Alkaline phosphatase-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Inosine monophosphate dehydrogenase (IMPDH) 4'-phosphopantetheinyl transferase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Rudiment single hybrid motif Single hybrid motif 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Chorismate mutase II ACT-like 11
PHP domain-like P-loop containing nucleoside triphosphate hydrolases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
MurD-like peptide ligases, peptide-binding domain PLP-binding barrel 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Sec-C motif TPR-like 11
Nucleic acid-binding proteins SCP-like 11
P-loop containing nucleoside triphosphate hydrolases HSP20-like chaperones 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
Multiheme cytochromes Multiheme cytochromes 11
FabD/lysophospholipase-like 4'-phosphopantetheinyl transferase 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Prim-pol domain "Winged helix" DNA-binding domain 11
ABC transporter involved in vitamin B12 uptake, BtuC "Winged helix" DNA-binding domain 11
Cadherin-like Cadherin-like 11
HAD-like HAD-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
NosL/MerB-like NosL/MerB-like 11
Fic-like "Winged helix" DNA-binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
RuvA domain 2-like MCP/YpsA-like 11
Carbamate kinase-like ACT-like 11
Rad51 N-terminal domain-like CheW-like 11
"Winged helix" DNA-binding domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Tex N-terminal region-like Ribonuclease H-like 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Nucleic acid-binding proteins GAD domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
HAMP domain-like P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
MurD-like peptide ligases, peptide-binding domain Alanine racemase C-terminal domain-like 11
TPR-like Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Aldolase AFP III-like domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Rad51 N-terminal domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Multiheme cytochromes TPR-like 11
DHH phosphoesterases Nucleotidyltransferase 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
FAD-linked oxidoreductase ALDH-like 11
FMN-linked oxidoreductases Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PRC-barrel domain MgtE N-terminal domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Thiolase-like Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
Lysozyme-like LysM domain 11
PIN domain-like Ribonuclease H-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
TGS-like ACT-like 11
GAF domain-like HlyD-like secretion proteins 11
EspE N-terminal domain-like GAF domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
PIN domain-like DNA/RNA polymerases 11
PUA domain-like Nucleotidylyl transferase 11
Nqo1C-terminal domain-like Nucleotide-binding domain 11
PH0987 N-terminal domain-like Cyclophilin-like 11
MurE/MurF N-terminal domain PLP-binding barrel 11
P-loop containing nucleoside triphosphate hydrolases lambda repressor-like DNA-binding domains 11
Nucleic acid-binding proteins PheT/TilS domain 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
SMAD/FHA domain Nucleotide cyclase 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Periplasmic binding protein-like II ACT-like 11
Rad51 N-terminal domain-like Homodimeric domain of signal transducing histidine kinase 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Transmembrane di-heme cytochromes Cytochrome c 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
TPR-like Lysozyme-like 11
TPR-like Ankyrin repeat 11
ADC-like Cdc48 domain 2-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
YWTD domain YWTD domain 11
PheT/TilS domain Putative DNA-binding domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
Sensory domain-like Sensory domain-like 11
C-type lectin-like TPR-like 11
Trigger factor ribosome-binding domain FKBP-like 11
NE0471 N-terminal domain-like IHF-like DNA-binding proteins 11
TATA-box binding protein-like DNA-glycosylase 11
TGS-like Class II aaRS ABD-related 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
CBS-domain pair CBS-domain pair 11
Nucleotide cyclase Ankyrin repeat 11
Sensory domain-like GAF domain-like 11
RuvA domain 2-like RuvA domain 2-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Protein kinase-like (PK-like) C-type lectin-like 11
P-loop containing nucleoside triphosphate hydrolases Enolase N-terminal domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Histidine-containing phosphotransfer domain, HPT domain Ankyrin repeat 11
Tetrapyrrole methylase HemD-like 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Trimeric LpxA-like enzymes 11
L30e-like alpha/beta knot 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
MFS general substrate transporter ARM repeat 11
Class II aaRS and biotin synthetases Radical SAM enzymes 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
YrdC/RibB Actin-like ATPase domain 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases RmlC-like cupins 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
PHP domain-like UDP-Glycosyltransferase/glycogen phosphorylase 11
alpha-helical ferredoxin ISP domain 11
CRISPR-associated protein CRISPR-associated protein 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
4Fe-4S ferredoxins Radical SAM enzymes 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
MurE/MurF N-terminal domain Alanine racemase C-terminal domain-like 11
PKD domain PKD domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
TPR-like Acid proteases 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
DHH phosphoesterases Poly A polymerase C-terminal region-like 11
Nucleotide-diphospho-sugar transferases HD-domain/PDEase-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Nucleic acid-binding proteins HD-domain/PDEase-like 11
Class I glutamine amidotransferase-like Homeodomain-like 11
TPR-like CheY-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FMN-linked oxidoreductases Riboflavin synthase domain-like 11
DNA breaking-rejoining enzymes MOP-like 11
Rubredoxin-like Superoxide reductase-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
HIT-like HIT-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Ribonuclease H-like RuvA domain 2-like 11
(Trans)glycosidases (Trans)glycosidases 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
TPR-like Homeodomain-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Ribokinase-like AraD/HMP-PK domain-like 11
ACP-like ACP-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Periplasmic binding protein-like II 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Cadherin-like beta-Roll 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
CBS-domain pair ACT-like 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Peptide methionine sulfoxide reductase Mss4-like 11
Inosine monophosphate dehydrogenase (IMPDH) Radical SAM enzymes 11
Multiheme cytochromes Transmembrane di-heme cytochromes 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Nqo5-like HydB/Nqo4-like 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
MetI-like MetI-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
PreATP-grasp domain Single hybrid motif 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
CheW-like CheY-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Carbamate kinase-like PUA domain-like 11
HAMP domain-like PP2C-like 11
alpha-helical ferredoxin SCP-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase TPR-like 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Radical SAM enzymes Radical SAM enzymes 11
Adenine nucleotide alpha hydrolases-like Phoshotransferase/anion transport protein 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
MFS general substrate transporter cAMP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
4Fe-4S ferredoxins Adenine nucleotide alpha hydrolases-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Nucleotidyltransferase TGS-like 11
Actin-like ATPase domain 4Fe-4S ferredoxins 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
NTF2-like NTF2-like 11
MOP-like MOP-like 11
Zinc beta-ribbon "Winged helix" DNA-binding domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
PurS-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Histidine-containing phosphotransfer domain, HPT domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PRC-barrel domain PRC-barrel domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
LysM domain Duplicated hybrid motif 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Radical SAM enzymes FKBP-like 11
DNA clamp DNA clamp 11
FKBP-like TPR-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
HMA, heavy metal-associated domain Triger factor/SurA peptide-binding domain-like 11
CBS-domain pair Poly A polymerase C-terminal region-like 11
Glycoside hydrolase/deacetylase Glycoside hydrolase/deacetylase 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
ADC-like PLP-dependent transferases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
CheY-like Ankyrin repeat 11
WD40 repeat-like MetI-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Thioredoxin-like ARM repeat 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Sigma2 domain of RNA polymerase sigma factors Periplasmic binding protein-like II 11
Aldolase HAD-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 PLP-dependent transferases 11
CarD-like TRCF domain-like 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains 4'-phosphopantetheinyl transferase 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase 4'-phosphopantetheinyl transferase 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
2Fe-2S ferredoxin-like ISP domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
Homeodomain-like DNA-glycosylase 11
Thiolase-like SCP-like 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Ankyrin repeat 11
Bacterial muramidases Lysozyme-like 11

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