SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Bacillus sp. 1NLA3E

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

695 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3410
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3013
CheY-like C-terminal effector domain of the bipartite response regulators 231
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 215
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 173
Actin-like ATPase domain Actin-like ATPase domain 164
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 143
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 132
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 132
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 131
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 131
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 134
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 125
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 127
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 122
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 122
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 117
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 102
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 103
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 105
GroES-like NAD(P)-binding Rossmann-fold domains 91
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 93
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 96
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 91
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 92
cAMP-binding domain-like "Winged helix" DNA-binding domain 81
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 74
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 75
LysM domain LysM domain 76
Calcium ATPase, transduction domain A HAD-like 74
PreATP-grasp domain Rudiment single hybrid motif 73
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 71
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 76
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 71
Thiolase-like Thiolase-like 71
HAD-like Calcium ATPase, transmembrane domain M 74
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 64
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 61
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 63
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
Nucleotide cyclase EAL domain-like 53
PTS system IIB component-like Phoshotransferase/anion transport protein 54
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 51
NAD(P)-binding Rossmann-fold domains ACT-like 54
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 52
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 54
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 53
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 55
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 52
Phospholipase D/nuclease Phospholipase D/nuclease 53
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 52
MoeA N-terminal region -like MoeA C-terminal domain-like 42
Homeodomain-like Homeodomain-like 42
Translation proteins EF-G C-terminal domain-like 43
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 42
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 42
Aldolase post-HMGL domain-like 42
PYP-like sensor domain (PAS domain) Homeodomain-like 42
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 43
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 41
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
FKBP-like Triger factor/SurA peptide-binding domain-like 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 43
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 44
P-loop containing nucleoside triphosphate hydrolases ACT-like 41
PurM N-terminal domain-like PurM C-terminal domain-like 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 41
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 41
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
ACT-like ACT-like 42
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 41
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
Alpha-L RNA-binding motif Pseudouridine synthase 41
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 42
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 44
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 41
(Trans)glycosidases Glycosyl hydrolase domain 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 42
Lysozyme-like beta-lactamase/transpeptidase-like 43
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
E set domains (Trans)glycosidases 32
Cupredoxins Cupredoxins 33
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 31
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 32
Trypsin-like serine proteases PDZ domain-like 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 31
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 32
HAMP domain-like PYP-like sensor domain (PAS domain) 31
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 32
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 31
PTS-regulatory domain, PRD PTS system IIB component-like 33
Sensory domain-like PYP-like sensor domain (PAS domain) 31
"Winged helix" DNA-binding domain CBS-domain pair 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 33
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 31
2Fe-2S ferredoxin-like alpha-helical ferredoxin 32
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 31
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 31
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 31
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 32
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
LysM domain (Trans)glycosidases 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 31
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 31
Single hybrid motif CoA-dependent acyltransferases 31
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 32
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 32
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
"Winged helix" DNA-binding domain GAF domain-like 31
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 31
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
Carbamate kinase-like ACT-like 31
lambda repressor-like DNA-binding domains SinR repressor dimerisation domain-like 31
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 31
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 32
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 32
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 31
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 32
PYP-like sensor domain (PAS domain) Nucleotide cyclase 32
LysM domain Cysteine proteinases 33
Sensory domain-like Sporulation response regulatory protein Spo0B 31
"Winged helix" DNA-binding domain PLP-dependent transferases 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 31
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 22
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 21
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
CheC-like Surface presentation of antigens (SPOA) 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Bacillus cereus metalloprotein-like Bacillus cereus metalloprotein-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 22
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 21
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 21
"Winged helix" DNA-binding domain PTS system IIB component-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 22
Serine metabolism enzymes domain ACT-like 22
E set domains Glycosyl hydrolase domain 21
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 21
CheY-like Homeodomain-like 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
Formyltransferase FMT C-terminal domain-like 22
Periplasmic binding protein-like II ACT-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 22
Nucleic acid-binding proteins Ribonuclease H-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
Translation proteins ThrRS/AlaRS common domain 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 21
"Winged helix" DNA-binding domain Chorismate lyase-like 21
PDZ domain-like ClpP/crotonase 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
ClpP/crotonase ClpP/crotonase 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
PreATP-grasp domain PreATP-grasp domain 22
Rudiment single hybrid motif Single hybrid motif 22
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 22
GAF domain-like Nucleotide cyclase 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 21
ClpP/crotonase PGBD-like 21
CheY-like P-loop containing nucleoside triphosphate hydrolases 22
TPR-like TPR-like 22
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 22
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Duplicated hybrid motif LysM domain 22
PreATP-grasp domain Single hybrid motif 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 22
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 22
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 21
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
L30e-like alpha/beta knot 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
PDZ domain-like PGBD-like 21
Cytochrome c Cytochrome c 22
PUA domain-like Nucleotidylyl transferase 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
ISP domain Bet v1-like 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HMA, heavy metal-associated domain HAD-like 22
TPR-like P-loop containing nucleoside triphosphate hydrolases 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
LysM domain PR-1-like 21
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
ALDH-like Dehydroquinate synthase-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 21
alpha-helical ferredoxin Nucleotide-binding domain 21
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
DNA methylase specificity domain DNA methylase specificity domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Trigger factor ribosome-binding domain FKBP-like 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Amine oxidase N-terminal region Amine oxidase N-terminal region 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
ACT-like Formyltransferase 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Translation proteins PRC-barrel domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Sec63 N-terminal domain-like PHP domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
(Trans)glycosidases RPA2825-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Homodimeric domain of signal transducing histidine kinase SpoIIaa-like 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
GroEL-intermediate domain like GroEL apical domain-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
YajQ-like YajQ-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
PreATP-grasp domain Cyclophilin-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Translation proteins "Winged helix" DNA-binding domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Galactose mutarotase-like Galactose mutarotase-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
CheY-like Methylesterase CheB, C-terminal domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
HD-domain/PDEase-like ACT-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
L,D-transpeptidase pre-catalytic domain-like L,D-transpeptidase catalytic domain-like 11
SirA-like Rhodanese/Cell cycle control phosphatase 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
PH0987 N-terminal domain-like Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
RuvA domain 2-like BRCT domain 11
Protease propeptides/inhibitors Subtilisin-like 11
Sec63 N-terminal domain-like Nucleotidyltransferase 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Macro domain-like Zn-dependent exopeptidases 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
DNA primase core N-terminal domain of DnaB helicase 11
RuvA domain 2-like JAB1/MPN domain 11
PreATP-grasp domain Aldolase 11
RuvA domain 2-like RuvA domain 2-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Hsp33 domain HSP33 redox switch-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PEP carboxykinase-like P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Class II aaRS and biotin synthetases SufE/NifU 11
Actin-like ATPase domain HD-domain/PDEase-like 11
YrdC/RibB Actin-like ATPase domain 11
Hypothetical protein SAV1430 ARM repeat 11
EAL domain-like Sensory domain-like 11
post-HMGL domain-like Single hybrid motif 11
NTF2-like beta-lactamase/transpeptidase-like 11
vWA-like vWA-like 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
CBS-domain pair ACT-like 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Zinc beta-ribbon DNA primase core 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Globin-like Riboflavin synthase domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
HD-domain/PDEase-like TGS-like 11
Copper amine oxidase, domain N (Trans)glycosidases 11
FMT C-terminal domain-like ClpP/crotonase 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
Cystatin/monellin Cystatin/monellin 11
PK C-terminal domain-like Phosphohistidine domain 11
Rudiment single hybrid motif Aldolase 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
CBS-domain pair MgtE membrane domain-like 11
Nucleotide-binding domain ISP domain 11
Class II aaRS and biotin synthetases Translation proteins 11
PGBD-like Cysteine proteinases 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Cyclophilin-like Cyclophilin-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Multiheme cytochromes Multiheme cytochromes 11
4Fe-4S ferredoxins ARM repeat 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Fibronectin type III Chitinase insertion domain 11
GAF domain-like EAL domain-like 11
Rudiment single hybrid motif Cyclophilin-like 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
GAF domain-like GAF domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PK beta-barrel domain-like PK C-terminal domain-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
TGS-like ThrRS/AlaRS common domain 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Rhodanese/Cell cycle control phosphatase Metallo-hydrolase/oxidoreductase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
PK beta-barrel domain-like Phosphohistidine domain 11
CheY-binding domain of CheA CheW-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Zn-dependent exopeptidases Sporulation related repeat 11
CheY-like Nucleotide cyclase 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Cupredoxins Fibronectin type III 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
LysM domain Zn-dependent exopeptidases 11
HCP-like HCP-like 11
CarD-like TRCF domain-like 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Flavoproteins Riboflavin synthase domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Nucleic acid-binding proteins BRCT domain 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
Nucleotidylyl transferase tRNA-binding arm 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
PA domain Subtilisin-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
TGS-like Class II aaRS and biotin synthetases 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Rhomboid-like TPR-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
"Winged helix" DNA-binding domain HprK N-terminal domain-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
DNA clamp DNA clamp 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
S-adenosylmethionine decarboxylase S-adenosyl-L-methionine-dependent methyltransferases 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like BRCT domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
HD-domain/PDEase-like Nucleotidyltransferase 11
"Winged helix" DNA-binding domain PRTase-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
DNA polymerase beta, N-terminal domain-like Sec63 N-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
NAD(P)-binding Rossmann-fold domains P-loop containing nucleoside triphosphate hydrolases 11
HprK N-terminal domain-like CBS-domain pair 11
Staphylococcal nuclease Ada DNA repair protein, N-terminal domain (N-Ada 10) 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Fibronectin type III (Trans)glycosidases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Tetrapyrrole methylase HemD-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
PreATP-grasp domain Methylglyoxal synthase-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
DNA repair protein MutS, domain III SMR domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Translation proteins Ribosomal protein S5 domain 2-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Glucose permease domain IIB Duplicated hybrid motif 11
Amine oxidase N-terminal region Amine oxidase catalytic domain 11
Glycoside hydrolase/deacetylase Nucleotide-diphospho-sugar transferases 11
Nucleotidyltransferase ACT-like 11
"Winged helix" DNA-binding domain DnaD domain-like 11
Aldolase Single hybrid motif 11
LysM domain PGBD-like 11
Fibronectin type III Fibronectin type III 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
CheY-like "Winged helix" DNA-binding domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
beta-lactamase/transpeptidase-like Fibronectin type III 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
NAD(P)-binding Rossmann-fold domains Homeodomain-like 11
MgtE N-terminal domain-like CBS-domain pair 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
MetI-like Periplasmic binding protein-like II 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Formyltransferase ClpP/crotonase 11
Class II aaRS and biotin synthetases GAD domain-like 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
RPA2825-like LysM domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Nucleotide cyclase HD-domain/PDEase-like 11
PYP-like sensor domain (PAS domain) EAL domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
PRC-barrel domain PRC-barrel domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SpoIIaa-like 11
Lysozyme-like Fibronectin type III 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Metallo-hydrolase/oxidoreductase ISP domain 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Nucleic acid-binding proteins HD-domain/PDEase-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Ribonuclease H-like RuvA domain 2-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Acyl-CoA N-acyltransferases (Nat) Nucleotidylyl transferase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Ribonuclease H-like DNA/RNA polymerases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
"Winged helix" DNA-binding domain HRDC-like 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
FliG FliG 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Tex N-terminal region-like RuvA domain 2-like 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
NTF2-like Penicillin binding protein dimerisation domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Lysozyme-like Duplicated hybrid motif 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
MetI-like MetI-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
PUA domain-like alpha/beta knot 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Resolvase-like Homeodomain-like 11
Macro domain-like lambda repressor-like DNA-binding domains 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
GAF domain-like PYP-like sensor domain (PAS domain) 11
Homeodomain-like SIS domain 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nucleic acid-binding proteins GAD domain-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
"Winged helix" DNA-binding domain TrkA C-terminal domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Nucleotidyltransferase TGS-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
PRTase-like PRTase-like 11
NAD(P)-binding Rossmann-fold domains PYP-like sensor domain (PAS domain) 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Tex N-terminal region-like Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
LysM domain Glycoside hydrolase/deacetylase 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
"Winged helix" DNA-binding domain Putative transcriptional regulator TM1602, C-terminal domain 11
Protein kinase-like (PK-like) HCP-like 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
L9 N-domain-like Ribonuclease H-like 11
Rudiment single hybrid motif post-HMGL domain-like 11
Zinc beta-ribbon N-terminal domain of DnaB helicase 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
SacY-like RNA-binding domain PTS-regulatory domain, PRD 11
DeoB insert domain-like Alkaline phosphatase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Cupredoxins Cytochrome c 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Nucleic acid-binding proteins PheT/TilS domain 11
PheT/TilS domain Putative DNA-binding domain 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
PHP domain-like RuvA domain 2-like 11
Nucleotide-diphospho-sugar transferases PLP-dependent transferases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PIN domain-like Ribonuclease H-like 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Translation proteins Translation proteins 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
PreATP-grasp domain post-HMGL domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
YrdC/RibB RibA-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
UraD-Like Tetrahydrobiopterin biosynthesis enzymes-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
DNA-glycosylase Nudix 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Carbamate kinase-like PUA domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Tetrapyrrole methylase Nitrite and sulphite reductase 4Fe-4S domain-like 11
HisI-like all-alpha NTP pyrophosphatases 11
(Trans)glycosidases Chitinase insertion domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Alkaline phosphatase-like 11
Cyclophilin-like PH0987 N-terminal domain-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
TGS-like ACT-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
PHP14-like Phospholipase D/nuclease 11
PIN domain-like DNA/RNA polymerases 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
TGS-like Class II aaRS ABD-related 11
PPK N-terminal domain-like PHP14-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
CheY-like CheY-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 11
Cyclophilin-like Single hybrid motif 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleotidyltransferase PHP domain-like 11
(Trans)glycosidases Glycoside hydrolase/deacetylase 11

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