SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Rhizobium etli CIAT 652

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

724 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 782
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 5314
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4225
P-loop containing nucleoside triphosphate hydrolases MOP-like 402
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 395
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 314
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 301
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 282
GroES-like NAD(P)-binding Rossmann-fold domains 283
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 271
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 244
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 233
Nucleotide cyclase EAL domain-like 239
Homeodomain-like Homeodomain-like 226
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2016
Thioredoxin-like GST C-terminal domain-like 191
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 193
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1915
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 194
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 171
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 175
Actin-like ATPase domain Actin-like ATPase domain 167
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 166
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1512
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1414
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 148
CheY-like C-terminal effector domain of the bipartite response regulators 133
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 136
PYP-like sensor domain (PAS domain) Nucleotide cyclase 137
Homodimeric domain of signal transducing histidine kinase CheY-like 1212
PYP-like sensor domain (PAS domain) EAL domain-like 126
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 114
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 114
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 113
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 114
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 114
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 114
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 103
"Winged helix" DNA-binding domain Actin-like ATPase domain 103
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 102
PYP-like sensor domain (PAS domain) CheY-like 1010
(Trans)glycosidases Glycosyl hydrolase domain 95
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 91
Thiolase-like Thiolase-like 91
cAMP-binding domain-like "Winged helix" DNA-binding domain 91
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 83
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
Regulatory protein AraC Homeodomain-like 82
CheY-like CheY-like 88
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 71
Enolase N-terminal domain-like Enolase C-terminal domain-like 71
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 74
Trypsin-like serine proteases PDZ domain-like 74
PreATP-grasp domain Rudiment single hybrid motif 74
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 71
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 63
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 65
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 61
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 63
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 61
"Winged helix" DNA-binding domain GAF domain-like 61
CheY-like P-loop containing nucleoside triphosphate hydrolases 62
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 64
"Winged helix" DNA-binding domain Chorismate lyase-like 61
EF-G C-terminal domain-like EF-G C-terminal domain-like 54
MetI-like MetI-like 52
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
PDZ domain-like PDZ domain-like 53
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 53
Nucleotide cyclase TPR-like 54
Lysozyme-like beta-lactamase/transpeptidase-like 53
E set domains (Trans)glycosidases 53
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 53
HlyD-like secretion proteins HlyD-like secretion proteins 52
CheY-like Homeodomain-like 51
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 51
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
Folate-binding domain Aminomethyltransferase beta-barrel domain 53
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 42
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 43
"Winged helix" DNA-binding domain PLP-dependent transferases 41
Calcium ATPase, transduction domain A HAD-like 43
MalF N-terminal region-like MetI-like 41
Alpha-L RNA-binding motif Pseudouridine synthase 42
Galactose-binding domain-like (Trans)glycosidases 42
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 42
E set domains Glycosyl hydrolase domain 42
Class I glutamine amidotransferase-like Homeodomain-like 42
HAD-like Calcium ATPase, transmembrane domain M 43
CBS-domain pair FAD-binding/transporter-associated domain-like 41
Cytochrome c Cytochrome c 42
PLP-binding barrel Alanine racemase C-terminal domain-like 41
lambda repressor-like DNA-binding domains RmlC-like cupins 42
PGBD-like L,D-transpeptidase catalytic domain-like 43
Rudiment single hybrid motif Single hybrid motif 43
beta-Roll beta-Roll 44
Glutathione synthetase ATP-binding domain-like Single hybrid motif 43
RmlC-like cupins Homeodomain-like 42
FAD/NAD(P)-binding domain Folate-binding domain 42
Translation proteins EF-G C-terminal domain-like 43
Phospholipase D/nuclease Phospholipase D/nuclease 43
PreATP-grasp domain Single hybrid motif 43
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 42
Homeodomain-like SIS domain 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 31
ACT-like Formyltransferase 31
GAF domain-like Nucleotide cyclase 33
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
Nqo1 middle domain-like Nqo1C-terminal domain-like 32
Cupredoxins Cupredoxins 32
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 32
ACT-like ACT-like 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
GAF domain-like CheY-like 33
TPR-like TPR-like 33
L30e-like alpha/beta knot 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 31
GroEL equatorial domain-like GroEL apical domain-like 31
Lysozyme-like PGBD-like 31
PYP-like sensor domain (PAS domain) GAF domain-like 33
GAF domain-like Homodimeric domain of signal transducing histidine kinase 33
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
GroEL-intermediate domain like GroEL apical domain-like 31
Nudix "Winged helix" DNA-binding domain 31
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 32
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 33
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 31
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 32
GroEL equatorial domain-like GroEL-intermediate domain like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
GroES-like GroES-like 31
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 32
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 32
Nucleic acid-binding proteins RuvA domain 2-like 33
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 21
alpha-helical ferredoxin Nucleotide-binding domain 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 21
Phage tail proteins gp5 N-terminal domain-like 22
4Fe-4S ferredoxins ADC-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 21
Cyclophilin-like Cyclophilin-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
C-terminal effector domain of the bipartite response regulators TPR-like 22
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
Homodimeric domain of signal transducing histidine kinase CheW-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
FAD-linked reductases, C-terminal domain Folate-binding domain 21
HMA, heavy metal-associated domain HAD-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 22
Macro domain-like Zn-dependent exopeptidases 21
CBS-domain pair MgtE membrane domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 21
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 22
CheY-like Nucleotide cyclase 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
Nucleotidyltransferase ACT-like 22
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 21
YrdC/RibB RibA-like 21
Single hybrid motif CoA-dependent acyltransferases 21
Homeodomain-like Probable bacterial effector-binding domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
MgtE N-terminal domain-like MgtE membrane domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
ISP domain Bet v1-like 21
Translation proteins ThrRS/AlaRS common domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
E set domains E set domains 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
alpha/beta-Hydrolases alpha/beta-Hydrolases 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Sigma2 domain of RNA polymerase sigma factors TPR-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 21
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
MgtE N-terminal domain-like CBS-domain pair 21
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
2Fe-2S ferredoxin-like ADC-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
gp5 N-terminal domain-like Phage fibre proteins 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Phage tail proteins Phage fibre proteins 22
Phage tail proteins Phage tail proteins 22
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 21
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
Acetyl-CoA synthetase-like ACP-like 22
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
(Trans)glycosidases (Trans)glycosidases 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
HAMP domain-like PYP-like sensor domain (PAS domain) 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
PLP-dependent transferases NAD(P)-binding Rossmann-fold domains 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 21
CheY-like Methylesterase CheB, C-terminal domain 21
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 21
PDZ domain-like ClpP/crotonase 21
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 21
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 21
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 21
TolB, N-terminal domain TPR-like 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 22
PH0987 N-terminal domain-like Cyclophilin-like 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 21
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
MFS general substrate transporter MFS general substrate transporter 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 21
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 22
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Aldolase post-HMGL domain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
beta-lactamase/transpeptidase-like Sporulation related repeat 22
E set domains Cadherin-like 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Ferritin-like Ferritin-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
PreATP-grasp domain post-HMGL domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Putative DNA-binding domain C-terminal effector domain of the bipartite response regulators 11
Nucleotide cyclase TolB, N-terminal domain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
TROVE domain-like vWA-like 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Radical SAM enzymes RuvA domain 2-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Translation proteins Translation proteins 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
Nucleotidylyl transferase tRNA-binding arm 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Carbamate kinase-like PUA domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Nucleic acid-binding proteins GAD domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
RuvA domain 2-like JAB1/MPN domain 11
Rudiment single hybrid motif Aldolase 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Clc chloride channel CBS-domain pair 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
CarD-like TRCF domain-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Zinc beta-ribbon DNA primase core 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Cyclophilin-like Single hybrid motif 11
C-terminal effector domain of the bipartite response regulators TolB, N-terminal domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
PLP-dependent transferases PLP-dependent transferases 11
RuvA domain 2-like RuvA domain 2-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Hsp33 domain HSP33 redox switch-like 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
TerB-like Chaperone J-domain 11
CoA-dependent acyltransferases ACP-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
(Trans)glycosidases NAD(P)-binding Rossmann-fold domains 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Aldolase AFP III-like domain 11
Sm-like ribonucleoproteins cAMP-binding domain-like 11
Trypsin-like serine proteases Phospholipase C/P1 nuclease 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Bacterial muramidases Lysozyme-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase Nucleotidyltransferase 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Hairpin loop containing domain-like Hairpin loop containing domain-like 11
Rhomboid-like TPR-like 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
PIN domain-like DNA/RNA polymerases 11
Cadherin-like Cadherin-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Ribonuclease H-like RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Thioredoxin-like TPR-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
dUTPase-like dUTPase-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Caspase-like HCP-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Oxidoreductase molybdopterin-binding domain E set domains 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
(Trans)glycosidases Class I glutamine amidotransferase-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
HRDC-like HRDC-like 11
DAK1/DegV-like DhaL-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Aldolase Single hybrid motif 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
ACP-like alpha/beta-Hydrolases 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Apolipoprotein A-I Apolipoprotein A-I 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Ferritin-like Calcium ATPase, transduction domain A 11
TGS-like ACT-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Pectin lyase-like beta-Roll 11
Homeodomain-like NagB/RpiA/CoA transferase-like 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
P-loop containing nucleoside triphosphate hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Single hybrid motif TK C-terminal domain-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
YjeF N-terminal domain-like Ribokinase-like 11
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
PIN domain-like Ribonuclease H-like 11
HCP-like Porins 11
Periplasmic binding protein-like II vWA-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
HCP-like TPR-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
PGBD-like PGBD-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
GAF domain-like EAL domain-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
DNA methylase specificity domain DNA methylase specificity domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Galactose mutarotase-like Galactose mutarotase-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Poly A polymerase C-terminal region-like ACT-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-linked oxidoreductase 11
Thioredoxin-like Nqo1C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
AGR C 984p-like AGR C 984p-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
EAL domain-like CBS-domain pair 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Cupredoxins Cytochrome c 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
PreATP-grasp domain Cyclophilin-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
GAF domain-like Phosphohistidine domain 11
SH3-domain Cysteine proteinases 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
FliG FliG 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
TPR-like Porins 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain RmlC-like cupins 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Serine metabolism enzymes domain ACT-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain NAD(P)-linked oxidoreductase 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
FMN-binding split barrel GAF domain-like 11
TGS-like Class II aaRS ABD-related 11
Ribonuclease H-like HRDC-like 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
GAF domain-like GAF domain-like 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Periplasmic binding protein-like II ACT-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Nucleotide-diphospho-sugar transferases Glycoside hydrolase/deacetylase 11
DNA-glycosylase Nudix 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
HD-domain/PDEase-like TGS-like 11
Dihydrofolate reductase-like Dihydrofolate reductase-like 11
DNA clamp DNA clamp 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
FAD-linked oxidoreductase ALDH-like 11
PUA domain-like alpha/beta knot 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
beta-Barrel protease inhibitors beta-Barrel protease inhibitors 11
PPK N-terminal domain-like PHP14-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Translation proteins PRC-barrel domain 11
HAMP domain-like Nucleotide cyclase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
Rudiment single hybrid motif Cyclophilin-like 11
CBS-domain pair Nucleotide cyclase 11
HAMP domain-like EAL domain-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase alpha/beta-Hydrolases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
DeoB insert domain-like Alkaline phosphatase-like 11
RuvA domain 2-like BRCT domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
PH0987 N-terminal domain-like Single hybrid motif 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
RNase III domain-like dsRNA-binding domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
PheT/TilS domain Putative DNA-binding domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Carbamate kinase-like ACT-like 11
LysM domain Duplicated hybrid motif 11
Trypsin-like serine proteases Hairpin loop containing domain-like 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
Cytochrome P450 4Fe-4S ferredoxins 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Pectin lyase-like Pectin lyase-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Mechanosensitive channel protein MscS (YggB), C-terminal domain cAMP-binding domain-like 11
Phage fibre proteins Phage fibre proteins 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Thioredoxin-like Nqo1 middle domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PHP14-like Phospholipase D/nuclease 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Hairpin loop containing domain-like Terpenoid cyclases/Protein prenyltransferases 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Hairpin loop containing domain-like TPR-like 11
TPR-like Terpenoid cyclases/Protein prenyltransferases 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
YebC-like PFL-like glycyl radical enzymes 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Nucleic acid-binding proteins PheT/TilS domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
PLP-dependent transferases GroES-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
ADC synthase Class I glutamine amidotransferase-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
RmlC-like cupins RmlC-like cupins 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Nucleotide-diphospho-sugar transferases Radical SAM enzymes 11
GAF domain-like Homeodomain-like 11
(Trans)glycosidases Anthrax protective antigen 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PreATP-grasp domain Aldolase 11
S-adenosyl-L-methionine-dependent methyltransferases EreA/ChaN-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Protein kinase-like (PK-like) PLP-dependent transferases 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Rudiment single hybrid motif post-HMGL domain-like 11
Acid phosphatase/Vanadium-dependent haloperoxidase Pectin lyase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
ClpP/crotonase ClpP/crotonase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
post-HMGL domain-like Single hybrid motif 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Nucleic acid-binding proteins BRCT domain 11
Beta-D-glucan exohydrolase, C-terminal domain Anthrax protective antigen 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
S-adenosyl-L-methionine-dependent methyltransferases Glycoside hydrolase/deacetylase 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
HCP-like PGBD-like 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Trigger factor ribosome-binding domain FKBP-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Putative DNA-binding domain lambda repressor-like DNA-binding domains 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
HD-domain/PDEase-like ACT-like 11
Sensory domain-like HAMP domain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
TGS-like ThrRS/AlaRS common domain 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotidyltransferase TGS-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Ferritin-like HAD-like 11
Formyltransferase FMT C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
YlxR-like L30e-like 11
TGS-like Class II aaRS and biotin synthetases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11

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