SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Candidatus Puniceispirillum marinum IMCC1322

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

515 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 272
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2414
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 186
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 174
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 154
Folate-binding domain Aminomethyltransferase beta-barrel domain 143
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 121
P-loop containing nucleoside triphosphate hydrolases MOP-like 111
Actin-like ATPase domain Actin-like ATPase domain 105
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 103
FAD/NAD(P)-binding domain Folate-binding domain 92
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 92
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 82
Thioredoxin-like GST C-terminal domain-like 81
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 84
ISP domain Bet v1-like 73
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 71
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 73
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 61
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 63
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 63
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 62
FAD-linked reductases, C-terminal domain Folate-binding domain 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 52
CheY-like C-terminal effector domain of the bipartite response regulators 52
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 51
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 53
Enolase N-terminal domain-like Enolase C-terminal domain-like 51
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 51
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 42
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 41
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
FKBP-like Triger factor/SurA peptide-binding domain-like 44
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
PreATP-grasp domain Rudiment single hybrid motif 41
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 43
GroES-like NAD(P)-binding Rossmann-fold domains 42
TPR-like TPR-like 44
Homeodomain-like Homeodomain-like 43
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Homeodomain-like SIS domain 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
TPR-like P-loop containing nucleoside triphosphate hydrolases 33
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 31
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 31
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 31
NTF2-like NTF2-like 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 33
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 33
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 33
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 32
ACT-like ACT-like 33
Thiolase-like Thiolase-like 31
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
MetI-like MetI-like 32
"Winged helix" DNA-binding domain GAF domain-like 31
PurM N-terminal domain-like PurM C-terminal domain-like 33
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 32
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 32
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 31
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Cadherin-like Cadherin-like 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 22
Nucleic acid-binding proteins RuvA domain 2-like 22
CheY-like Homeodomain-like 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Cadherin-like Metalloproteases ("zincins"), catalytic domain 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
"Winged helix" DNA-binding domain PLP-dependent transferases 21
Alpha-L RNA-binding motif Pseudouridine synthase 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
Nucleotidyltransferase ACT-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
CheY-like P-loop containing nucleoside triphosphate hydrolases 21
Translation proteins EF-G C-terminal domain-like 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 22
Trypsin-like serine proteases PDZ domain-like 22
lambda repressor-like DNA-binding domains RmlC-like cupins 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
"Winged helix" DNA-binding domain Chorismate lyase-like 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 22
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
L30e-like alpha/beta knot 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Zinc beta-ribbon DNA primase core 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 22
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Single hybrid motif CoA-dependent acyltransferases 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Class I glutamine amidotransferase-like Homeodomain-like 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Ribonuclease H-like DNA/RNA polymerases 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 21
PLP-binding barrel Alanine racemase C-terminal domain-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 22
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 22
PDZ domain-like PDZ domain-like 22
Resolvase-like Homeodomain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Macro domain-like Zn-dependent exopeptidases 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Serine metabolism enzymes domain ACT-like 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
HCP-like HCP-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Single hybrid motif TK C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Flagellar hook protein flgE Flagellar hook protein flgE 11
dUTPase-like dUTPase-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Periplasmic binding protein-like II ACT-like 11
Voltage-gated potassium channels TerB-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
YrdC/RibB RibA-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
TGS-like ThrRS/AlaRS common domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
PUA domain-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
TGS-like ACT-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
CarD-like TRCF domain-like 11
FAD-linked reductases, C-terminal domain Thioredoxin-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
ISP domain FAD/NAD(P)-binding domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
GroEL equatorial domain-like GroEL equatorial domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Barwin-like endoglucanases Sporulation related repeat 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Galactose-binding domain-like Galactose-binding domain-like 11
DNA clamp DNA clamp 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Cytochrome c Cytochrome c 11
alpha-helical ferredoxin Nucleotide-binding domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Formyltransferase FMT C-terminal domain-like 11
PIN domain-like DNA/RNA polymerases 11
Origin of replication-binding domain, RBD-like P-loop containing nucleoside triphosphate hydrolases 11
JAB1/MPN domain Cysteine proteinases 11
PheT/TilS domain Putative DNA-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Thioredoxin-like TPR-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
HRDC-like HRDC-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
HIT-like HIT-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Bet v1-like FAD/NAD(P)-binding domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Bet v1-like FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Clc chloride channel CBS-domain pair 11
FAD-linked oxidoreductase ALDH-like 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
GroES-like GroES-like 11
YebC-like PFL-like glycyl radical enzymes 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Concanavalin A-like lectins/glucanases Soluble quinoprotein glucose dehydrogenase 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
RNase III domain-like dsRNA-binding domain-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Nucleotidyltransferase TGS-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Carbamate kinase-like PUA domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
YajQ-like YajQ-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
FAD/NAD(P)-binding domain PurM N-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Thioredoxin-like Nqo1 middle domain-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Nucleotidylyl transferase Riboflavin kinase-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
HD-domain/PDEase-like ACT-like 11
Ribonuclease H-like HRDC-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair MgtE membrane domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
TerB-like Chaperone J-domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
TGS-like Class II aaRS ABD-related 11
TPR-like Protein prenylyltransferase 11
Class II aaRS and biotin synthetases GAD domain-like 11
P-loop containing nucleoside triphosphate hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
GIY-YIG endonuclease RuvA domain 2-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Ribosome recycling factor, RRF Acylphosphatase/BLUF domain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
PDZ domain-like ClpP/crotonase 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Soluble quinoprotein glucose dehydrogenase PKD domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
MgtE N-terminal domain-like CBS-domain pair 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
2Fe-2S ferredoxin-like ADC-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Actin-like ATPase domain HD-domain/PDEase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
PreATP-grasp domain PreATP-grasp domain 11
LysM domain Duplicated hybrid motif 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
FAD/NAD(P)-binding domain PurM C-terminal domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Nucleotide-binding domain Nucleotide-binding domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Cadherin-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
4Fe-4S ferredoxins ADC-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Ribonuclease H-like CBS-domain pair 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Concanavalin A-like lectins/glucanases C-type lectin-like 11
Restriction endonuclease-like S-adenosyl-L-methionine-dependent methyltransferases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
DNA primase core P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribokinase-like Nucleotidylyl transferase 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases Ribosomal protein S5 domain 2-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase NHL repeat 11
Folate-binding domain TrmE connector domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
CheC-like Surface presentation of antigens (SPOA) 11
Concanavalin A-like lectins/glucanases PKD domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
CbiG N-terminal domain-like Tetrapyrrole methylase 11
(Trans)glycosidases Class I glutamine amidotransferase-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
Translation proteins Translation proteins 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
SIS domain CBS-domain pair 11
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 11
FAD/NAD(P)-binding domain Thioredoxin-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Protein kinase-like (PK-like) PLP-dependent transferases 11
Bacterial muramidases Lysozyme-like 11
Aldolase post-HMGL domain-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
beta-Roll beta-Roll 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Nucleic acid-binding proteins BRCT domain 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Ribulose-phoshate binding barrel Nitrite and sulphite reductase 4Fe-4S domain-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
FliG FliG 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Phase 1 flagellin Phase 1 flagellin 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
Translation proteins ThrRS/AlaRS common domain 11
HisI-like all-alpha NTP pyrophosphatases 11
CobE/GbiG C-terminal domain-like Tetrapyrrole methylase 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
PIN domain-like Ribonuclease H-like 11
Zinc beta-ribbon P-loop containing nucleoside triphosphate hydrolases 11
Oxidoreductase molybdopterin-binding domain E set domains 11
RuvA domain 2-like JAB1/MPN domain 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Hsp33 domain HSP33 redox switch-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
DNA-glycosylase Nudix 11
Duplicated hybrid motif PLP-dependent transferases 11
Periplasmic binding protein-like II GlnB-like 11
TGS-like Class II aaRS and biotin synthetases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 11
Carbamate kinase-like ACT-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
RuvA domain 2-like BRCT domain 11
HD-domain/PDEase-like TGS-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Protein kinase-like (PK-like) Duplicated hybrid motif 11
PLP-dependent transferases PLP-dependent transferases 11
Poly A polymerase C-terminal region-like ACT-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Translation proteins PRC-barrel domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Cadherin-like beta-Roll 11
Nucleotidylyl transferase tRNA-binding arm 11

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