SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Azospirillum sp. B510

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

851 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 10248
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 733
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5332
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4915
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 4535
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 4526
Homodimeric domain of signal transducing histidine kinase CheY-like 4434
CheY-like C-terminal effector domain of the bipartite response regulators 384
PYP-like sensor domain (PAS domain) CheY-like 2922
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 2720
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 275
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 275
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 253
P-loop containing nucleoside triphosphate hydrolases MOP-like 231
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 2310
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 212
NAD(P)-binding Rossmann-fold domains GroES-like 194
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 192
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 184
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 1813
TPR-like TPR-like 1811
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 189
CheY-like Histidine-containing phosphotransfer domain, HPT domain 1814
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 172
Nucleotide cyclase EAL domain-like 1712
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 164
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 163
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1612
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 1611
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 154
Thioredoxin-like GST C-terminal domain-like 151
Homeodomain-like Homeodomain-like 145
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 147
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 141
PYP-like sensor domain (PAS domain) EAL domain-like 139
"Winged helix" DNA-binding domain GAF domain-like 132
Actin-like ATPase domain Actin-like ATPase domain 135
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 138
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 136
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 126
Thiolase-like Thiolase-like 121
CheY-like CheY-like 1211
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 124
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 127
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 121
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 113
CheY-like Homeodomain-like 112
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 113
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 113
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 113
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 113
CheY-like P-loop containing nucleoside triphosphate hydrolases 112
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 106
P-loop containing nucleoside triphosphate hydrolases Translation proteins 106
Acetyl-CoA synthetase-like ACP-like 109
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 104
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 101
CoA-dependent acyltransferases CoA-dependent acyltransferases 109
ISP domain Bet v1-like 94
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 99
Acetyl-CoA synthetase-like CoA-dependent acyltransferases 98
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 96
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 96
ACP-like CoA-dependent acyltransferases 98
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 93
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 82
beta-Roll beta-Roll 87
CheY-like Methylesterase CheB, C-terminal domain 84
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 83
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 85
PYP-like sensor domain (PAS domain) GAF domain-like 88
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 82
PreATP-grasp domain Rudiment single hybrid motif 83
Homeodomain-like Ribonuclease H-like 82
MetI-like MetI-like 83
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 82
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 73
ACP-like ACP-like 76
Nucleic acid-binding proteins Nucleic acid-binding proteins 74
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 71
cAMP-binding domain-like "Winged helix" DNA-binding domain 71
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 71
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 76
Pentapeptide repeat-like Pentapeptide repeat-like 73
"Winged helix" DNA-binding domain Chorismate lyase-like 72
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 73
GAF domain-like Homodimeric domain of signal transducing histidine kinase 77
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 64
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 64
Histidine-containing phosphotransfer domain, HPT domain CheW-like 64
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 64
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 64
lambda repressor-like DNA-binding domains RmlC-like cupins 61
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 62
CheY-like Nucleotide cyclase 64
Enolase N-terminal domain-like Enolase C-terminal domain-like 61
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 64
Homeodomain-like SIS domain 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
PLP-binding barrel Alanine racemase C-terminal domain-like 52
GAF domain-like CheY-like 55
Translation proteins EF-G C-terminal domain-like 53
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 54
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 51
MoeA N-terminal region -like MoeA C-terminal domain-like 52
Class I glutamine amidotransferase-like Homeodomain-like 51
HAMP domain-like PYP-like sensor domain (PAS domain) 55
HAMP domain-like CheY-like 55
HAD-like Calcium ATPase, transmembrane domain M 54
EF-G C-terminal domain-like EF-G C-terminal domain-like 53
ParB/Sulfiredoxin KorB DNA-binding domain-like 52
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 52
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 53
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
(Trans)glycosidases Glycosyl hydrolase domain 55
ACT-like ACT-like 53
Calcium ATPase, transduction domain A HAD-like 54
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 53
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 55
Trypsin-like serine proteases PDZ domain-like 52
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 52
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 54
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 54
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 55
"Winged helix" DNA-binding domain PLP-dependent transferases 51
HlyD-like secretion proteins HlyD-like secretion proteins 42
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 42
CheY-like HD-domain/PDEase-like 43
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 43
E set domains (Trans)glycosidases 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
GAF domain-like Nucleotide cyclase 44
L30e-like alpha/beta knot 42
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 44
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 42
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 44
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 41
NAD(P)-binding Rossmann-fold domains ACP-like 44
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 44
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 44
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 44
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 43
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 44
Triger factor/SurA peptide-binding domain-like FKBP-like 43
PurM N-terminal domain-like PurM C-terminal domain-like 42
Methyl-accepting chemotaxis protein (MCP) signaling domain Sensory domain-like 44
Cytochrome c Cytochrome c 42
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 42
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 44
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 43
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 44
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 42
Lysozyme-like beta-lactamase/transpeptidase-like 44
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 44
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 42
Homodimeric domain of signal transducing histidine kinase CheW-like 42
E set domains Glycosyl hydrolase domain 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
GAF domain-like Homeodomain-like 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 31
FliG FliG 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
gp5 N-terminal domain-like Phage fibre proteins 32
tRNA-binding arm Class II aaRS and biotin synthetases 31
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 32
PDZ domain-like PDZ domain-like 31
Translation proteins Ribosomal protein S5 domain 2-like 31
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 31
Thiolase-like NAD(P)-binding Rossmann-fold domains 33
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 31
Homeodomain-like Probable bacterial effector-binding domain 31
GroEL equatorial domain-like GroEL apical domain-like 31
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
FabD/lysophospholipase-like Thiolase-like 33
Phage tail proteins Phage tail proteins 32
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 32
Methyl-accepting chemotaxis protein (MCP) signaling domain PilZ domain-like 33
Phage tail proteins gp5 N-terminal domain-like 32
NTF2-like Sec-C motif 31
Glutathione synthetase ATP-binding domain-like Single hybrid motif 32
Sensory domain-like CheY-like 33
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 32
PreATP-grasp domain Single hybrid motif 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 33
Alpha-L RNA-binding motif Pseudouridine synthase 32
Phage tail proteins Phage fibre proteins 32
GroEL-intermediate domain like GroEL apical domain-like 31
PK beta-barrel domain-like PK C-terminal domain-like 31
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 32
GroEL equatorial domain-like GroEL-intermediate domain like 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
RmlC-like cupins Homeodomain-like 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Probable ACP-binding domain of malonyl-CoA ACP transacylase Thiolase-like 33
Sm-like ribonucleoproteins cAMP-binding domain-like 33
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 31
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
HMA, heavy metal-associated domain HAD-like 33
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Cupredoxins Cupredoxins 33
Rudiment single hybrid motif Single hybrid motif 32
Folate-binding domain Aminomethyltransferase beta-barrel domain 32
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
PDZ domain-like ClpP/crotonase 31
Phospholipase D/nuclease Phospholipase D/nuclease 33
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 32
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 31
CheW-like CheW-like 33
ACP-like Thiolase-like 33
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
ClpP/crotonase ClpP/crotonase 32
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 22
NE0471 N-terminal domain-like lambda repressor-like DNA-binding domains 21
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Probable ACP-binding domain of malonyl-CoA ACP transacylase alpha/beta-Hydrolases 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
GAF domain-like GAF domain-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
CoA-dependent acyltransferases alpha/beta-Hydrolases 22
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 22
PGBD-like L,D-transpeptidase catalytic domain-like 21
NAD(P)-binding Rossmann-fold domains CoA-dependent acyltransferases 22
Putative DNA-binding domain Class II aaRS and biotin synthetases 22
Nucleotidyltransferase ACT-like 22
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
FAD/NAD(P)-binding domain Folate-binding domain 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
ACP-like alpha/beta-Hydrolases 22
TPR-like Nucleotide-diphospho-sugar transferases 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 22
Single hybrid motif CoA-dependent acyltransferases 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Acid phosphatase/Vanadium-dependent haloperoxidase Autotransporter 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Protein kinase-like (PK-like) (Trans)glycosidases 22
Macro domain-like Zn-dependent exopeptidases 21
Translation proteins ThrRS/AlaRS common domain 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 22
PYP-like sensor domain (PAS domain) PilZ domain-like 22
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
Methyl-accepting chemotaxis protein (MCP) signaling domain Hemerythrin-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
NAD(P)-binding Rossmann-fold domains alpha/beta-Hydrolases 22
alpha-helical ferredoxin Nucleotide-binding domain 22
FAD/NAD(P)-binding domain Thioredoxin-like 22
PheT/TilS domain Anticodon-binding domain of PheRS 22
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 21
FabD/lysophospholipase-like alpha/beta-Hydrolases 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Nucleotidyltransferase HD-domain/PDEase-like 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
HPr-like Phosphohistidine domain 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Pectin lyase-like Pectin lyase-like 22
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Methylesterase CheB, C-terminal domain GAF domain-like 22
Periplasmic binding protein-like I Sm-like ribonucleoproteins 22
CheW-like CheY-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
PYP-like sensor domain (PAS domain) Homeodomain-like 22
YrdC/RibB RibA-like 21
Putative DNA-binding domain Anticodon-binding domain of PheRS 22
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
FabD/lysophospholipase-like GroES-like 22
Cyclophilin-like PH0987 N-terminal domain-like 22
(Trans)glycosidases CalX-like 21
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 21
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 22
HCP-like Lysozyme-like 21
Thiolase-like alpha/beta-Hydrolases 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
PheT/TilS domain Putative DNA-binding domain 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 22
HPr-like Phosphoenolpyruvate/pyruvate domain 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 21
GAF domain-like EAL domain-like 22
PYP-like sensor domain (PAS domain) Ribonuclease H-like 22
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 21
Nucleotidylyl transferase Alpha-L RNA-binding motif 21
FMN-binding split barrel UbiD C-terminal domain-like 22
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 22
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
PheT/TilS domain Class II aaRS and biotin synthetases 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain GAF domain-like 22
ACT-like Formyltransferase 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
S-adenosyl-L-methionine-dependent methyltransferases GAF domain-like 22
FabD/lysophospholipase-like ACP-like 22
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 22
Bacterial muramidases Lysozyme-like 21
(Trans)glycosidases (Trans)glycosidases 22
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
CheC-like Surface presentation of antigens (SPOA) 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
HD-domain/PDEase-like ACT-like 22
RuvA domain 2-like RuvA domain 2-like 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Thiolase-like GroES-like 22
Galactose-binding domain-like (Trans)glycosidases 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Clc chloride channel CBS-domain pair 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Ribonuclease H-like DNA/RNA polymerases 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
Periplasmic binding protein-like II EAL domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
PTS system IIB component-like PTS system IIB component-like 11
Tex N-terminal region-like RuvA domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PHP14-like Phospholipase D/nuclease 11
Protein kinase-like (PK-like) GAF domain-like 11
TGS-like Class II aaRS and biotin synthetases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
CBS-domain pair ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Galactose mutarotase-like (Trans)glycosidases 11
Zinc beta-ribbon Hedgehog/intein (Hint) domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
ADC synthase Class I glutamine amidotransferase-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
CBS-domain pair Homodimeric domain of signal transducing histidine kinase 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
ACP-like GroES-like 11
YjeF N-terminal domain-like Ribokinase-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Thioredoxin-like Six-hairpin glycosidases 11
GAF domain-like Phosphohistidine domain 11
HRDC-like HRDC-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
CBS-domain pair Nucleotide cyclase 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Ribbon-helix-helix ACT-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Ribulose-phoshate binding barrel Nitrite and sulphite reductase 4Fe-4S domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Galactose mutarotase-like Galactose mutarotase-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Nucleotide cyclase SMAD/FHA domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
Periplasmic binding protein-like II ACT-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
CO dehydrogenase molybdoprotein N-domain-like NAD(P)-binding Rossmann-fold domains 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Flagellar hook protein flgE Flagellar hook protein flgE 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
DNA clamp DNA clamp 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
PIN domain-like Ribonuclease H-like 11
Phase 1 flagellin Phase 1 flagellin 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
ACP-like Trimeric LpxA-like enzymes 11
Cyclophilin-like Cyclophilin-like 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Thioredoxin-like Nqo1 middle domain-like 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotidyltransferase Nucleotidyltransferase 11
Barwin-like endoglucanases Sporulation related repeat 11
Trigger factor ribosome-binding domain FKBP-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Rudiment single hybrid motif Cyclophilin-like 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
cAMP-binding domain-like CBS-domain pair 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Nucleotide cyclase TPR-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
TGS-like ACT-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
ALDH-like Dehydroquinate synthase-like 11
Cadherin-like Integrin alpha N-terminal domain 11
Carbamate kinase-like ACT-like 11
Duplicated hybrid motif Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
cAMP-binding domain-like cAMP-binding domain-like 11
AhpD-like AhpD-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
beta-Roll Cadherin-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Acyl-CoA N-acyltransferases (Nat) SCP-like 11
TPR-like Terpenoid cyclases/Protein prenyltransferases 11
GIY-YIG endonuclease RuvA domain 2-like 11
"Winged helix" DNA-binding domain Acetyl-CoA synthetase-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
SGNH hydrolase Autotransporter 11
Periplasmic binding protein-like II Nucleotide cyclase 11
PGBD-like TerB-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Nudix "Winged helix" DNA-binding domain 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Nucleotidylyl transferase Nudix 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases HD-domain/PDEase-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
Phoshotransferase/anion transport protein HPr-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
HAMP domain-like EAL domain-like 11
Formyltransferase FMT C-terminal domain-like 11
Carbamate kinase-like PUA domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
CO dehydrogenase molybdoprotein N-domain-like Bet v1-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
EreA/ChaN-like PDZ domain-like 11
Rhodanese/Cell cycle control phosphatase Activating enzymes of the ubiquitin-like proteins 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
PRTase-like PRTase-like 11
PHP domain-like AF1531-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Zinc beta-ribbon Homing endonucleases 11
HCP-like HCP-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Single hybrid motif TK C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Lysozyme-like PGBD-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
NagB/RpiA/CoA transferase-like 4Fe-4S ferredoxins 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
HD-domain/PDEase-like TGS-like 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Nucleotide-diphospho-sugar transferases HAD-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
YebC-like PFL-like glycyl radical enzymes 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Homeodomain-like Periplasmic binding protein-like II 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
Nucleic acid-binding proteins BRCT domain 11
PreATP-grasp domain Cyclophilin-like 11
Lysozyme-like Sporulation related repeat 11
YajQ-like YajQ-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain PreATP-grasp domain 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
Caspase-like Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases Periplasmic binding protein-like II 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Nucleic acid-binding proteins GAD domain-like 11
cAMP-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
LysM domain LysM domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
cAMP-binding domain-like Homodimeric domain of signal transducing histidine kinase 11
Pectin lyase-like Caspase-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
lambda repressor-like DNA-binding domains KorB DNA-binding domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Glucose permease domain IIB Glucose permease domain IIB 11
Regulatory protein AraC Homeodomain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
2Fe-2S ferredoxin-like ADC-like 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
GAF domain-like HD-domain/PDEase-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Arginase/deacetylase Arginase/deacetylase 11
Nucleotide-binding domain Nucleotide-binding domain 11
Cyclophilin-like Single hybrid motif 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked oxidoreductase ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
HAMP domain-like Nucleotide cyclase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Pectin lyase-like Autotransporter 11
Nqo5-like HydB/Nqo4-like 11
YlxR-like L30e-like 11
Zinc beta-ribbon DNA primase core 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Thioredoxin-like Thioredoxin-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
CheY-like EAL domain-like 11
Periplasmic binding protein-like I cAMP-binding domain-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Sensory domain-like HAMP domain-like 11
GroES-like alpha/beta-Hydrolases 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
JAB1/MPN domain Cysteine proteinases 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PIN domain-like DNA/RNA polymerases 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Class II aaRS and biotin synthetases GAD domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Putative DNA-binding domain Putative DNA-binding domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Homing endonucleases DNA primase core 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
PLP-dependent transferases PLP-dependent transferases 11
MgtE N-terminal domain-like CBS-domain pair 11
HlyD-like secretion proteins Outer membrane efflux proteins (OEP) 11
CBS-domain pair MgtE membrane domain-like 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Ribosomal protein L6 Ribosomal protein L6 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
Ribonuclease H-like RuvA domain 2-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
PPK N-terminal domain-like PHP14-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Periplasmic binding protein-like II 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Single hybrid motif alpha/beta-Hydrolases 11
Ribokinase-like Nucleotidylyl transferase 11
Thioredoxin-like TPR-like 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PH0987 N-terminal domain-like Single hybrid motif 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Hedgehog/intein (Hint) domain Homing endonucleases 11
Zinc beta-ribbon Zinc beta-ribbon 11
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
CarD-like TRCF domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases cAMP-binding domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Translation proteins Translation proteins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
DNA-glycosylase Nudix 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
beta-Roll Integrin alpha N-terminal domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
OMPA-like OmpA-like 11
Acyl-CoA N-acyltransferases (Nat) Nucleotidylyl transferase 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Translation proteins PRC-barrel domain 11
Duplicated hybrid motif Phosphoenolpyruvate/pyruvate domain 11
Duplicated hybrid motif Phosphohistidine domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
RelE-like P-loop containing nucleoside triphosphate hydrolases 11
Mechanosensitive channel protein MscS (YggB), C-terminal domain cAMP-binding domain-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
FMN-binding split barrel "Winged helix" DNA-binding domain 11
LysM domain Duplicated hybrid motif 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
ABC transporter transmembrane region cAMP-binding domain-like 11
Molybdenum cofactor-binding domain Bet v1-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Aldolase post-HMGL domain-like 11
Molybdenum cofactor-binding domain NAD(P)-binding Rossmann-fold domains 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Nucleotidyltransferase TGS-like 11
Ribonuclease H-like HRDC-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Ribonuclease H-like Restriction endonuclease-like 11
Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
FKBP-like FKBP-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Protein kinase-like (PK-like) E set domains 11
Cation efflux protein cytoplasmic domain-like Cation efflux protein cytoplasmic domain-like 11
Globin-like Riboflavin synthase domain-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
EAL domain-like CBS-domain pair 11
Aldolase AFP III-like domain 11
4Fe-4S ferredoxins ADC-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
TerB-like Chaperone J-domain 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
RuvA domain 2-like BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
CheY-like "Winged helix" DNA-binding domain 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
TGS-like ThrRS/AlaRS common domain 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
TGS-like Class II aaRS ABD-related 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
lambda repressor-like DNA-binding domains ParB/Sulfiredoxin 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
HAMP domain-like MFS general substrate transporter 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
GroES-like GroES-like 11
Sensory domain-like PilZ domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Hsp33 domain HSP33 redox switch-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Six-hairpin glycosidases Terpenoid cyclases/Protein prenyltransferases 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Duplicated hybrid motif HPr-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
ABC transporter transmembrane region ABC transporter transmembrane region 11
Homodimeric domain of signal transducing histidine kinase Periplasmic binding protein-like II 11
PUA domain-like alpha/beta knot 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Thiolase-like CoA-dependent acyltransferases 11
Acid phosphatase/Vanadium-dependent haloperoxidase Pectin lyase-like 11
E set domains E set domains 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Resolvase-like Homeodomain-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Hedgehog/intein (Hint) domain DNA primase core 11

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