SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Allochromatium vinosum DSM 180

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

736 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6344
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 3934
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3730
Homodimeric domain of signal transducing histidine kinase CheY-like 3631
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 3629
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 3227
CheY-like PYP-like sensor domain (PAS domain) 3026
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 2622
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2518
CheY-like Histidine-containing phosphotransfer domain, HPT domain 2423
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 2420
CheY-like CheY-like 1919
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 1918
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1714
Nucleotide cyclase EAL domain-like 1514
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 127
PYP-like sensor domain (PAS domain) EAL domain-like 1211
P-loop containing nucleoside triphosphate hydrolases Translation proteins 116
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 114
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 114
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 114
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 114
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 114
Actin-like ATPase domain Actin-like ATPase domain 104
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 103
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 105
CheY-like C-terminal effector domain of the bipartite response regulators 101
PYP-like sensor domain (PAS domain) GAF domain-like 1010
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 92
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 84
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 84
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 84
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 83
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 84
Cytochrome c Cytochrome c 83
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 81
CheY-like Nucleotide cyclase 87
ACT-like ACT-like 74
cAMP-binding domain-like "Winged helix" DNA-binding domain 71
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 75
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 75
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 77
CheY-like HD-domain/PDEase-like 72
Calcium ATPase, transduction domain A HAD-like 75
PurM N-terminal domain-like PurM C-terminal domain-like 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
CheY-like GAF domain-like 66
Methylesterase CheB, C-terminal domain CheY-like 62
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 64
CheY-like P-loop containing nucleoside triphosphate hydrolases 62
GAF domain-like Homodimeric domain of signal transducing histidine kinase 66
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 63
HAD-like Calcium ATPase, transmembrane domain M 64
Histidine-containing phosphotransfer domain, HPT domain CheW-like 63
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 63
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 63
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 64
Translation proteins EF-G C-terminal domain-like 63
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 55
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 53
Nucleic acid-binding proteins Nucleic acid-binding proteins 55
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 53
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 53
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 53
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 53
CheY-like EAL domain-like 55
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 53
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 53
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 51
CheY-like Homeodomain-like 51
(Trans)glycosidases Glycosyl hydrolase domain 54
EF-G C-terminal domain-like EF-G C-terminal domain-like 52
Triger factor/SurA peptide-binding domain-like FKBP-like 54
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 53
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 54
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 41
HAMP domain-like PYP-like sensor domain (PAS domain) 44
GAF domain-like EAL domain-like 44
PreATP-grasp domain Rudiment single hybrid motif 41
beta-Roll beta-Roll 43
CBS-domain pair FAD-binding/transporter-associated domain-like 41
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 43
GAF domain-like GAF domain-like 44
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 43
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 42
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 43
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 41
GroES-like NAD(P)-binding Rossmann-fold domains 41
Homodimeric domain of signal transducing histidine kinase CheW-like 41
GAF domain-like Nucleotide cyclase 44
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 31
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 32
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 31
Lysozyme-like beta-lactamase/transpeptidase-like 32
HD-domain/PDEase-like ACT-like 32
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 32
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 31
RuvA domain 2-like Nucleic acid-binding proteins 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 31
Nucleotidyltransferase ACT-like 32
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 31
E set domains (Trans)glycosidases 32
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 33
Nucleotidyltransferase HD-domain/PDEase-like 32
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Hedgehog/intein (Hint) domain Homing endonucleases 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
HAMP domain-like CheY-like 32
Translation proteins Ribosomal protein S5 domain 2-like 31
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 33
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 33
E set domains Glycosyl hydrolase domain 32
PDZ domain-like PDZ domain-like 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 33
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 31
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 33
PDZ domain-like ClpP/crotonase 32
Aldolase post-HMGL domain-like 32
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 32
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 31
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 32
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
TPR-like TPR-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
CheW-like CheY-like 33
Alpha-L RNA-binding motif Pseudouridine synthase 31
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
PYP-like sensor domain (PAS domain) HD-domain/PDEase-like 22
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 22
Galactose mutarotase-like Six-hairpin glycosidases 22
4Fe-4S ferredoxins Nitrite and sulphite reductase 4Fe-4S domain-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Sec-C motif NTF2-like 22
Histidine-containing phosphotransfer domain, HPT domain EAL domain-like 22
GroEL equatorial domain-like GroEL apical domain-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
TGS-like ACT-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
GroEL equatorial domain-like GroEL-intermediate domain like 21
GAF domain-like Homeodomain-like 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 21
Nucleotidyltransferase TGS-like 21
TK C-terminal domain-like 4Fe-4S ferredoxins 22
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 22
DNA methylase specificity domain DNA methylase specificity domain 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
post-HMGL domain-like Single hybrid motif 21
HMA, heavy metal-associated domain HAD-like 22
HAMP domain-like Nucleotide cyclase 21
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
Phase 1 flagellin Phase 1 flagellin 21
Type II DNA topoisomerase Type II DNA topoisomerase 22
Hedgehog/intein (Hint) domain Hedgehog/intein (Hint) domain 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 22
Trypsin-like serine proteases PDZ domain-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
Periplasmic binding protein-like II CheY-like 22
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Nitrite/Sulfite reductase N-terminal domain-like 4Fe-4S ferredoxins 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 21
HD-domain/PDEase-like GAF domain-like 22
Single hybrid motif CoA-dependent acyltransferases 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
GroEL-intermediate domain like GroEL apical domain-like 21
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
"Winged helix" DNA-binding domain GAF domain-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 21
CBS-domain pair MgtE membrane domain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Aconitase iron-sulfur domain LeuD/IlvD-like 21
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 22
Galactose-binding domain-like Six-hairpin glycosidases 22
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Aldolase Single hybrid motif 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
HD-domain/PDEase-like TGS-like 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 22
Thiolase-like Thiolase-like 21
Homeodomain-like Ribonuclease H-like 22
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 21
NAD(P)-binding Rossmann-fold domains Radical SAM enzymes 21
Galactose mutarotase-like Galactose mutarotase-like 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
Type II DNA topoisomerase Hedgehog/intein (Hint) domain 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
MgtE N-terminal domain-like CBS-domain pair 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 22
PUA domain-like Ribosomal protein S5 domain 2-like 22
Galactose mutarotase-like E set domains 22
Homing endonucleases Homing endonucleases 22
MgtE N-terminal domain-like MgtE membrane domain-like 22
L9 N-domain-like Ribosomal protein L9 C-domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
MFS general substrate transporter MFS general substrate transporter 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Nucleotide cyclase 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Nucleotide cyclase PilZ domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Class I glutamine amidotransferase-like Ribulose-phoshate binding barrel 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
EAL domain-like CBS-domain pair 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase lambda repressor-like DNA-binding domains 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
UDP-Glycosyltransferase/glycogen phosphorylase HAD-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
GIY-YIG endonuclease RuvA domain 2-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
CheY-like TPR-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Histidine-containing phosphotransfer domain, HPT domain 11
2Fe-2S ferredoxin-like ADC-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
CarD-like TRCF domain-like 11
HAMP domain-like PP2C-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
TGS-like ThrRS/AlaRS common domain 11
Trigger factor ribosome-binding domain FKBP-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
YrdC/RibB RibA-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
(Trans)glycosidases (Trans)glycosidases 11
Nucleotidylyl transferase tRNA-binding arm 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Nucleic acid-binding proteins BRCT domain 11
Thioredoxin-like TPR-like 11
TGS-like Class II aaRS and biotin synthetases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Translation proteins ThrRS/AlaRS common domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
PUA domain-like Nucleotidylyl transferase 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Ribosomal protein S5 domain 2-like Homing endonucleases 11
Ribonuclease H-like RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Formyltransferase FMT C-terminal domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Periplasmic binding protein-like II ACT-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
DHH phosphoesterases CBS-domain pair 11
PIN domain-like DNA/RNA polymerases 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Pili subunits Pili subunits 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PurS-like FGAM synthase PurL, linker domain 11
Protein kinase-like (PK-like) Galactose mutarotase-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
Nucleotide-binding domain Nucleotide-binding domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Periplasmic binding protein-like II Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases OmpA-like 11
Translation proteins Translation proteins 11
Thioredoxin-like Nqo1C-terminal domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Photosystem II reaction centre subunit H, transmembrane region PRC-barrel domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Class II aaRS and biotin synthetases Translation proteins 11
FKBP-like FKBP-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Sensory domain-like CheY-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
NE0471 N-terminal domain-like lambda repressor-like DNA-binding domains 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Zinc beta-ribbon DNA primase core 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Carbamate kinase-like ACT-like 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
GAF domain-like Phosphohistidine domain 11
EreA/ChaN-like PDZ domain-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Periplasmic binding protein-like I Acylphosphatase/BLUF domain-like 11
PHP domain-like Homing endonucleases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Type II DNA topoisomerase Homing endonucleases 11
E set domains E set domains 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
CheW-like CheW-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
vWA-like TPR-like 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Putative DNA-binding domain CheY-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Galactose mutarotase-like (Trans)glycosidases 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
"Winged helix" DNA-binding domain Phosphotyrosine protein phosphatases I 11
Putative DNA-binding domain Translation proteins 11
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 11
Sm-like ribonucleoproteins cAMP-binding domain-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Homodimeric domain of signal transducing histidine kinase EAL domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Periplasmic binding protein-like I PYP-like sensor domain (PAS domain) 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
lambda repressor-like DNA-binding domains Homing endonucleases 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Thioredoxin-like Mss4-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
PurS-like PurM C-terminal domain-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Tex N-terminal region-like Ribonuclease H-like 11
Ammonium transporter EAL domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
MFS general substrate transporter P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like Ribonuclease H-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
UROD/MetE-like UROD/MetE-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
PLP-dependent transferases SufE/NifU 11
Chorismate mutase II ACT-like 11
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
RuvA domain 2-like BRCT domain 11
Nucleotide cyclase Acylphosphatase/BLUF domain-like 11
Cadherin-like beta-Roll 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Ribbon-helix-helix ACT-like 11
PPK N-terminal domain-like PHP14-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
Sensory domain-like HAMP domain-like 11
EspE N-terminal domain-like EspE N-terminal domain-like 11
DNA clamp DNA clamp 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Periplasmic binding protein-like I Nucleotide cyclase 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
PUA domain-like alpha/beta knot 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Thioredoxin-like GST C-terminal domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like Six-hairpin glycosidases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
RuvA domain 2-like JAB1/MPN domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Chorismate mutase II Periplasmic binding protein-like II 11
Macro domain-like Zn-dependent exopeptidases 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Hedgehog/intein (Hint) domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
FliG FliG 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Translation proteins "Winged helix" DNA-binding domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
RuvA domain 2-like RuvA domain 2-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
PYP-like sensor domain (PAS domain) Acylphosphatase/BLUF domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
PreATP-grasp domain PreATP-grasp domain 11
Ammonium transporter Nucleotide cyclase 11
lambda repressor-like DNA-binding domains Type II DNA topoisomerase 11
Probable bacterial effector-binding domain Probable bacterial effector-binding domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
"Winged helix" DNA-binding domain MOP-like 11
Hedgehog/intein (Hint) domain GyrA/ParC C-terminal domain-like 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Ribonuclease H-like DNA/RNA polymerases 11
ACP-like Acetyl-CoA synthetase-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
S-adenosyl-L-methionine-dependent methyltransferases Histidine-containing phosphotransfer domain, HPT domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
PHP14-like Phospholipase D/nuclease 11
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Tetrapyrrole methylase Tetrapyrrole methylase 11
Zn-dependent exopeptidases LysM domain 11
EAL domain-like Acylphosphatase/BLUF domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
CRISPR-associated protein CRISPR-associated protein 11
(Phosphotyrosine protein) phosphatases II ADP-ribosylglycohydrolase 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
MFS general substrate transporter "Winged helix" DNA-binding domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Peptide methionine sulfoxide reductase Mss4-like 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
TGS-like Class II aaRS ABD-related 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Thioredoxin-like Nqo1 middle domain-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase EAL domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
YajQ-like YajQ-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
CBS-domain pair Nucleotide cyclase 11
Nucleic acid-binding proteins GAD domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
alpha/beta-Hydrolases OsmC-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Ribokinase-like Nucleotidylyl transferase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Homing endonucleases 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
RNase III domain-like dsRNA-binding domain-like 11
Periplasmic binding protein-like I EAL domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PurS-like PurM N-terminal domain-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Ribosomal protein S5 domain 2-like Hedgehog/intein (Hint) domain 11
N-terminal domain of DnaB helicase Hedgehog/intein (Hint) domain 11
Ribosomal protein S5 domain 2-like lambda repressor-like DNA-binding domains 11
MesJ substrate recognition domain-like PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
HprK N-terminal domain-like PEP carboxykinase-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
cAMP-binding domain-like CBS-domain pair 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
PurS-like Class I glutamine amidotransferase-like 11
4Fe-4S ferredoxins ADC-like 11
Hsp33 domain HSP33 redox switch-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Cadherin-like Cadherin-like 11
Ammonium transporter PYP-like sensor domain (PAS domain) 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
MOP-like MOP-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Nucleotide-diphospho-sugar transferases P-loop containing nucleoside triphosphate hydrolases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Protein kinase-like (PK-like) Six-hairpin glycosidases 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Tropomyosin Tropomyosin 11
PheT/TilS domain Putative DNA-binding domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Hairpin loop containing domain-like Terpenoid cyclases/Protein prenyltransferases 11
Lysozyme-like LysM domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Thioredoxin-like Thioredoxin-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Carbamate kinase-like PUA domain-like 11
ACT-like HAD-like 11
Nudix Thiamin phosphate synthase 11
DNA-glycosylase Nudix 11
PHP domain-like Hedgehog/intein (Hint) domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Hedgehog/intein (Hint) domain lambda repressor-like DNA-binding domains 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Pseudouridine synthase PUA domain-like 11
EAL domain-like HD-domain/PDEase-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
N-terminal domain of DnaB helicase Homing endonucleases 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
L30e-like alpha/beta knot 11
Peptide methionine sulfoxide reductase Thioredoxin-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
CheC-like Surface presentation of antigens (SPOA) 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases Homing endonucleases 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Translation proteins PRC-barrel domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Bacterial muramidases Lysozyme-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Homodimeric domain of signal transducing histidine kinase Nucleotide cyclase 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Methylesterase CheB, C-terminal domain Histidine-containing phosphotransfer domain, HPT domain 11
Mechanosensitive channel protein MscS (YggB), C-terminal domain cAMP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) 11
P-loop containing nucleoside triphosphate hydrolases Hedgehog/intein (Hint) domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
EAL domain-like Sensory domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
YjeF N-terminal domain-like Ribokinase-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
vWA-like Quinoprotein alcohol dehydrogenase-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11

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