SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Beijerinckia indica subsp. indica ATCC 9039

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

700 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 431
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3115
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3017
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 231
GroES-like NAD(P)-binding Rossmann-fold domains 203
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 174
Thioredoxin-like GST C-terminal domain-like 141
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 134
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 135
Actin-like ATPase domain Actin-like ATPase domain 123
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 126
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 114
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 114
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 118
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 118
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 114
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 114
Homeodomain-like Homeodomain-like 114
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 102
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 103
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 93
Calcium ATPase, transduction domain A HAD-like 97
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 93
CheY-like C-terminal effector domain of the bipartite response regulators 92
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 95
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 82
Thiolase-like Thiolase-like 81
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 77
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 77
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 73
HlyD-like secretion proteins HlyD-like secretion proteins 74
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
TPR-like TPR-like 76
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 74
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
HAD-like Calcium ATPase, transmembrane domain M 65
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 64
CheY-like Homeodomain-like 61
Homodimeric domain of signal transducing histidine kinase CheY-like 66
CheY-like P-loop containing nucleoside triphosphate hydrolases 61
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
Nucleic acid-binding proteins Nucleic acid-binding proteins 64
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 65
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 54
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 52
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 51
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
Trypsin-like serine proteases PDZ domain-like 53
Acetyl-CoA synthetase-like ACP-like 55
PreATP-grasp domain Rudiment single hybrid motif 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
Cytochrome c Cytochrome c 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
P-loop containing nucleoside triphosphate hydrolases MOP-like 41
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 44
Triger factor/SurA peptide-binding domain-like FKBP-like 44
Lysozyme-like beta-lactamase/transpeptidase-like 43
Translation proteins EF-G C-terminal domain-like 43
PLP-binding barrel Alanine racemase C-terminal domain-like 41
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 44
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 44
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
RmlC-like cupins Homeodomain-like 41
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
PurM N-terminal domain-like PurM C-terminal domain-like 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 41
CheY-like CheY-like 44
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 42
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 44
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
ACT-like ACT-like 33
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 33
Thiolase-like FabD/lysophospholipase-like 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 31
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 32
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 32
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 33
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 32
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Nucleic acid-binding proteins RuvA domain 2-like 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 33
Alpha-L RNA-binding motif Pseudouridine synthase 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
CoA-dependent acyltransferases CoA-dependent acyltransferases 33
Thiolase-like ACP-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 31
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
PDZ domain-like PDZ domain-like 32
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 32
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
MetI-like MetI-like 32
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
Pectin lyase-like Pectin lyase-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
FabD/lysophospholipase-like ACP-like 33
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 32
Galactose mutarotase-like E set domains 31
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 31
PYP-like sensor domain (PAS domain) CheY-like 33
CoA-dependent acyltransferases ACP-like 33
"Winged helix" DNA-binding domain GAF domain-like 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 33
PK beta-barrel domain-like PK C-terminal domain-like 31
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 33
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 21
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
"Winged helix" DNA-binding domain Actin-like ATPase domain 22
Single hybrid motif CoA-dependent acyltransferases 21
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 22
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Class I glutamine amidotransferase-like Homeodomain-like 21
Cupredoxins Cupredoxins 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Thiolase-like NAD(P)-binding Rossmann-fold domains 22
ACP-like ACP-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 21
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
PGBD-like L,D-transpeptidase catalytic domain-like 21
MOP-like MOP-like 21
HMA, heavy metal-associated domain HAD-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 22
GroEL equatorial domain-like GroEL-intermediate domain like 21
GroEL equatorial domain-like GroEL apical domain-like 21
P-loop containing nucleoside triphosphate hydrolases TPR-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 22
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
GroEL-intermediate domain like GroEL apical domain-like 21
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 22
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Ribosome binding protein Y (YfiA homologue) Nucleic acid-binding proteins 21
Lysozyme-like PGBD-like 21
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
NAD(P)-binding Rossmann-fold domains ACP-like 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
FAD/NAD(P)-binding domain ISP domain 22
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
"Winged helix" DNA-binding domain MOP-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Nucleotidyltransferase ACT-like 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
GAF domain-like Homeodomain-like 21
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 21
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 22
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
(Trans)glycosidases Protein kinase-like (PK-like) 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Translation proteins ThrRS/AlaRS common domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
TPR-like Trypsin-like serine proteases 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
RNase III domain-like dsRNA-binding domain-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
4Fe-4S ferredoxins ADC-like 11
Restriction endonuclease-like FKBP-like 11
Rhodanese/Cell cycle control phosphatase Ankyrin repeat 11
Ribonuclease H-like HRDC-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Translation proteins PRC-barrel domain 11
CarD-like TRCF domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
PheT/TilS domain Putative DNA-binding domain 11
LysM domain Duplicated hybrid motif 11
GIY-YIG endonuclease RuvA domain 2-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
VPA0735-like VPA0735-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
GAF domain-like PYP-like sensor domain (PAS domain) 11
HD-domain/PDEase-like ACT-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
GroES-like ACP-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Thiolase-like GroES-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases Dehydroquinate synthase-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
TPR-like Protein prenylyltransferase 11
PUA domain-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
YebC-like PFL-like glycyl radical enzymes 11
Urease, gamma-subunit Urease, beta-subunit 11
PIN domain-like DNA/RNA polymerases 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Toll/Interleukin receptor TIR domain P-loop containing nucleoside triphosphate hydrolases 11
Inosine monophosphate dehydrogenase (IMPDH) NAD(P)-binding Rossmann-fold domains 11
Ribosomal protein L6 Ribosomal protein L6 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Inosine monophosphate dehydrogenase (IMPDH) Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Hairpin loop containing domain-like Terpenoid cyclases/Protein prenyltransferases 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
S-adenosyl-L-methionine-dependent methyltransferases GroES-like 11
PDZ domain-like ClpP/crotonase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Protein prenylyltransferase UDP-Glycosyltransferase/glycogen phosphorylase 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
TPR-like Acid proteases 11
Mechanosensitive channel protein MscS (YggB), C-terminal domain cAMP-binding domain-like 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
YlxR-like L30e-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
PYP-like sensor domain (PAS domain) EAL domain-like 11
Subtilisin-like Galactose-binding domain-like 11
Voltage-gated potassium channels E set domains 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
PYP-like sensor domain (PAS domain) Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases Trypsin-like serine proteases 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Methylesterase CheB, C-terminal domain Tropomyosin 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
DNA clamp DNA clamp 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
dUTPase-like dUTPase-like 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
P-loop containing nucleoside triphosphate hydrolases Spectrin repeat 11
PreATP-grasp domain Single hybrid motif 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
ClpP/crotonase ClpP/crotonase 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
PPK N-terminal domain-like PHP14-like 11
UDP-Glycosyltransferase/glycogen phosphorylase S-adenosyl-L-methionine-dependent methyltransferases 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases FKBP-like 11
Pectin lyase-like Autotransporter 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Serine metabolism enzymes domain ACT-like 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Acetyl-CoA synthetase-like Glycerol-3-phosphate (1)-acyltransferase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
FAD-linked oxidoreductase ALDH-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Soluble quinoprotein glucose dehydrogenase Cytochrome c 11
beta-Roll Galactose-binding domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Tropomyosin 11
Thiolase-like PLP-dependent transferases 11
UDP-Glycosyltransferase/glycogen phosphorylase (Trans)glycosidases 11
TGS-like Class II aaRS and biotin synthetases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
lambda repressor-like DNA-binding domains RibA-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain FabD/lysophospholipase-like 11
ACP-like alpha/beta-Hydrolases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Periplasmic binding protein-like II Cytochrome c 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
lambda repressor-like DNA-binding domains YrdC/RibB 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Nqo5-like HydB/Nqo4-like 11
Bacterial muramidases Lysozyme-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Putative DNA-binding domain Citrate synthase 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase Acetyl-CoA synthetase-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
Periplasmic binding protein-like II ACT-like 11
Translation proteins Translation proteins 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Flavoproteins 11
beta-Roll beta-Roll 11
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Riboflavin synthase domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase CoA-dependent acyltransferases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Nucleotidyltransferase TGS-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
FAD/NAD(P)-binding domain FabD/lysophospholipase-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Inosine monophosphate dehydrogenase (IMPDH) Inosine monophosphate dehydrogenase (IMPDH) 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Flavoproteins Riboflavin synthase domain-like 11
GAF domain-like CheY-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Single hybrid motif alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Thioredoxin-like Nqo1 middle domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Globin-like Riboflavin synthase domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Thiolase-like CoA-dependent acyltransferases 11
DNA-glycosylase Nudix 11
Thioredoxin-like TPR-like 11
Toll/Interleukin receptor TIR domain TPR-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
CheC-like Surface presentation of antigens (SPOA) 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
GroES-like GroES-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
RmlC-like cupins RmlC-like cupins 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
(Trans)glycosidases Glycosyl hydrolase domain 11
Poly A polymerase C-terminal region-like ACT-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Apolipoprotein A-I Apolipoprotein A-I 11
Nucleotidylyl transferase tRNA-binding arm 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
ADC-like Riboflavin synthase domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Rudiment single hybrid motif Single hybrid motif 11
Nucleic acid-binding proteins GAD domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Origin of replication-binding domain, RBD-like P-loop containing nucleoside triphosphate hydrolases 11
ACP-like PLP-dependent transferases 11
Single hybrid motif TK C-terminal domain-like 11
ADC-like Flavoproteins 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Multiheme cytochromes TPR-like 11
Hsp33 domain HSP33 redox switch-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Inosine monophosphate dehydrogenase (IMPDH) ACP-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Nucleic acid-binding proteins BRCT domain 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
beta-Roll Subtilisin-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
FabD/lysophospholipase-like PLP-dependent transferases 11
Clc chloride channel CBS-domain pair 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
TGS-like ACT-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
Hairpin loop containing domain-like TPR-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Galactose mutarotase-like Six-hairpin glycosidases 11
PreATP-grasp domain PreATP-grasp domain 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Ribonuclease H-like DNA/RNA polymerases 11
TGS-like ThrRS/AlaRS common domain 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Zinc beta-ribbon DNA primase core 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
2Fe-2S ferredoxin-like ADC-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
HD-domain/PDEase-like TGS-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
YjeF N-terminal domain-like Ribokinase-like 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like Phosphohistidine domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
CheY-like Nucleotide cyclase 11
Nitrite and sulphite reductase 4Fe-4S domain-like ISP domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
TGS-like Class II aaRS ABD-related 11
PLP-dependent transferases CoA-dependent acyltransferases 11
CBS-domain pair MgtE membrane domain-like 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
Carbamate kinase-like PUA domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
FabD/lysophospholipase-like GroES-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Formyltransferase FMT C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
L30e-like alpha/beta knot 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
TPR-like Terpenoid cyclases/Protein prenyltransferases 11
beta-Barrel protease inhibitors beta-Barrel protease inhibitors 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Homeodomain-like SIS domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
PLP-dependent transferases Acetyl-CoA synthetase-like 11
YrdC/RibB RibA-like 11
Inosine monophosphate dehydrogenase (IMPDH) Thiolase-like 11
PIN domain-like Ribonuclease H-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
RuvA domain 2-like RuvA domain 2-like 11
CheY-like Aminoacid dehydrogenase-like, N-terminal domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
RuvA domain 2-like JAB1/MPN domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
FabD/lysophospholipase-like S-adenosyl-L-methionine-dependent methyltransferases 11
PHP14-like Phospholipase D/nuclease 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
FabD/lysophospholipase-like Acetyl-CoA synthetase-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Trigger factor ribosome-binding domain FKBP-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Sm-like ribonucleoproteins cAMP-binding domain-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
DNA methylase specificity domain DNA methylase specificity domain 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Tropomyosin 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Thiolase-like Acetyl-CoA synthetase-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
FliG FliG 11
Ferritin-like HAD-like 11
Tropomyosin PYP-like sensor domain (PAS domain) 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Galactose oxidase, central domain E set domains 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Inosine monophosphate dehydrogenase (IMPDH) FabD/lysophospholipase-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Nudix "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Regulatory protein AraC Homeodomain-like 11
ACP-like Trimeric LpxA-like enzymes 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
CheY-like Methylesterase CheB, C-terminal domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Ribonuclease H-like RuvA domain 2-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Carbamate kinase-like ACT-like 11
HRDC-like HRDC-like 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Ferritin-like Calcium ATPase, transduction domain A 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase PLP-dependent transferases 11
ADC-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase S-adenosyl-L-methionine-dependent methyltransferases 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Cation efflux protein cytoplasmic domain-like Cation efflux protein cytoplasmic domain-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Nucleotide cyclase EAL domain-like 11
FabD/lysophospholipase-like CoA-dependent acyltransferases 11
CheY-like NAD(P)-binding Rossmann-fold domains 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
"Winged helix" DNA-binding domain HRDC-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
FMN-dependent nitroreductase-like Rhodanese/Cell cycle control phosphatase 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
Thioredoxin-like Six-hairpin glycosidases 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Nitrite/Sulfite reductase N-terminal domain-like ISP domain 11
"Winged helix" DNA-binding domain SCP-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Ribokinase-like Nucleotidylyl transferase 11
PRC-barrel domain PRC-barrel domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
"Winged helix" DNA-binding domain Rhodanese/Cell cycle control phosphatase 11

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