SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Shewanella woodyi ATCC 51908

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

860 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 611
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4425
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3111
Nucleotide cyclase EAL domain-like 2210
C-terminal effector domain of the bipartite response regulators CheY-like 212
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1917
Homodimeric domain of signal transducing histidine kinase CheY-like 1917
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 195
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 188
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1815
Actin-like ATPase domain Actin-like ATPase domain 175
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1613
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 164
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 164
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 164
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1611
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 164
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 164
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 164
DPP6 N-terminal domain-like alpha/beta-Hydrolases 152
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 146
Thioredoxin-like GST C-terminal domain-like 142
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 136
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1313
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 126
PYP-like sensor domain (PAS domain) CheY-like 1211
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 125
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 126
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 126
PYP-like sensor domain (PAS domain) EAL domain-like 116
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 115
Thiolase-like Thiolase-like 112
Cytochrome c Cytochrome c 105
CheY-like CheY-like 109
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 106
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 106
CheY-like Homeodomain-like 103
TPR-like TPR-like 107
Homeodomain-like Homeodomain-like 106
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 98
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 98
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 92
CheY-like P-loop containing nucleoside triphosphate hydrolases 92
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 94
ACT-like ACT-like 85
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 82
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 71
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 74
CheY-like Histidine-containing phosphotransfer domain, HPT domain 77
Alpha-L RNA-binding motif Pseudouridine synthase 71
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 73
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 73
Homeodomain-like Ribonuclease H-like 62
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
GroES-like NAD(P)-binding Rossmann-fold domains 62
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 65
GAF domain-like Nucleotide cyclase 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 66
TPR-like Nucleotide cyclase 62
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 61
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 63
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 53
E set domains (Trans)glycosidases 55
PKD domain PKD domain 55
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 54
PYP-like sensor domain (PAS domain) GAF domain-like 54
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 51
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 51
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 52
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 52
HAMP domain-like Nucleotide cyclase 53
PDZ domain-like ClpP/crotonase 54
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 52
PreATP-grasp domain Rudiment single hybrid motif 53
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
C-terminal effector domain of the bipartite response regulators DPP6 N-terminal domain-like 54
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 52
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 43
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 43
HD-domain/PDEase-like Nucleotidyltransferase 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
HlyD-like secretion proteins HlyD-like secretion proteins 41
4Fe-4S ferredoxins ADC-like 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
PurM N-terminal domain-like PurM C-terminal domain-like 42
CheY-like Nucleotide cyclase 42
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 42
GAF domain-like Homeodomain-like 42
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 42
Carbohydrate binding domain Carbohydrate binding domain 44
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 42
Nucleotidyltransferase ACT-like 43
"Winged helix" DNA-binding domain PLP-dependent transferases 41
HD-domain/PDEase-like HD-domain/PDEase-like 43
Metalloproteases ("zincins"), catalytic domain PKD domain 44
HAMP domain-like CheY-like 44
CheW-like CheY-like 42
HAMP domain-like PYP-like sensor domain (PAS domain) 44
CheY-like HD-domain/PDEase-like 42
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 43
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 42
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 44
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 42
Translation proteins EF-G C-terminal domain-like 43
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 43
Regulatory protein AraC Homeodomain-like 42
Triger factor/SurA peptide-binding domain-like FKBP-like 44
(Trans)glycosidases Glycosyl hydrolase domain 44
HD-domain/PDEase-like ACT-like 43
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 43
C-terminal effector domain of the bipartite response regulators TPR-like 44
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Periplasmic binding protein-like II HD-domain/PDEase-like 32
Protease propeptides/inhibitors Subtilisin-like 33
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 31
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 32
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Aldolase post-HMGL domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
PYP-like sensor domain (PAS domain) Homeodomain-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 33
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
RmlC-like cupins Homeodomain-like 32
GAF domain-like EAL domain-like 32
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Sensory domain-like HD-domain/PDEase-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 32
Single hybrid motif CoA-dependent acyltransferases 33
2Fe-2S ferredoxin-like alpha-helical ferredoxin 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 31
2Fe-2S ferredoxin-like ADC-like 32
4Fe-4S ferredoxins Nucleotide-binding domain 33
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 31
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
Cadherin-like CalX-like 33
Nucleic acid-binding proteins RuvA domain 2-like 33
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
ClpP/crotonase ClpP/crotonase 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
alpha-helical ferredoxin Nucleotide-binding domain 33
Subtilisin-like Galactose-binding domain-like 33
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 32
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
NTF2-like NTF2-like 31
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 33
P-loop containing nucleoside triphosphate hydrolases TPR-like 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 31
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 33
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
MgtE N-terminal domain-like MgtE membrane domain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
Metallo-hydrolase/oxidoreductase SCP-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 22
Trypsin-like serine proteases PDZ domain-like 22
MFS general substrate transporter MFS general substrate transporter 22
Carbohydrate binding domain Chitinase insertion domain 22
Zinc beta-ribbon Zinc beta-ribbon 22
Calcium-dependent phosphotriesterase PYP-like sensor domain (PAS domain) 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
beta-N-acetylhexosaminidase-like domain E set domains 22
Carbohydrate-binding domain (Trans)glycosidases 22
Calcium ATPase, transduction domain A HAD-like 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Rudiment single hybrid motif Single hybrid motif 22
E set domains Glycosyl hydrolase domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Single hybrid motif Single hybrid motif 22
GroES-like GroES-like 21
HAMP domain-like EAL domain-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Sensory domain-like Periplasmic binding protein-like II 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
CalX-like PKD domain 22
4Fe-4S ferredoxins alpha-helical ferredoxin 22
vWA-like beta-Roll 22
Nucleotide-binding domain ADC-like 22
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Cupredoxins Cupredoxins 22
(Trans)glycosidases Chitinase insertion domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
Nucleotidyltransferase substrate binding subunit/domain ACT-like 22
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 21
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Tricorn protease N-terminal domain DPP6 N-terminal domain-like 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 22
HD-domain/PDEase-like TGS-like 21
Aldolase Single hybrid motif 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 21
HAD-like Calcium ATPase, transmembrane domain M 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Translation proteins Ribosomal protein S5 domain 2-like 21
GAF domain-like CheY-like 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
PP2C-like Protein kinase-like (PK-like) 21
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
ACT-like NAD(P)-binding Rossmann-fold domains 22
Homodimeric domain of signal transducing histidine kinase CheW-like 21
Carbamate kinase-like ACT-like 22
Nucleotidyltransferase TGS-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Galactose-binding domain-like Galactose-binding domain-like 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 22
Tricorn protease N-terminal domain ClpP/crotonase 22
TSP type-3 repeat OmpA-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
GAF domain-like HD-domain/PDEase-like 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Macro domain-like Zn-dependent exopeptidases 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
E set domains Carbohydrate binding domain 22
MgtE N-terminal domain-like CBS-domain pair 21
MoeA N-terminal region -like MoeA C-terminal domain-like 22
TGS-like ACT-like 21
Subtilisin-like PKD domain 22
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Nucleotide-binding domain Formate dehydrogenase/DMSO reductase, domains 1-3 22
PreATP-grasp domain Single hybrid motif 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
lambda repressor-like DNA-binding domains RmlC-like cupins 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
HMA, heavy metal-associated domain HAD-like 22
post-HMGL domain-like Single hybrid motif 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
CheY-like Methylesterase CheB, C-terminal domain 21
Galactose mutarotase-like Six-hairpin glycosidases 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Metalloproteases ("zincins"), catalytic domain Concanavalin A-like lectins/glucanases 22
OMPA-like OmpA-like 22
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Ribonuclease H-like DNA/RNA polymerases 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
CBS-domain pair MgtE membrane domain-like 21
MetI-like MetI-like 21
PKD domain Concanavalin A-like lectins/glucanases 22
Thioredoxin-like Thioredoxin-like 22
Cadherin-like Cadherin-like 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 21
PDZ domain-like PDZ domain-like 22
Tricorn protease N-terminal domain PDZ domain-like 22
PLP-binding barrel Alanine racemase C-terminal domain-like 21
Multiheme cytochromes TPR-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
Carbohydrate-binding domain E set domains 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Carbohydrate binding domain (Trans)glycosidases 22
DNA methylase specificity domain DNA methylase specificity domain 11
Nucleic acid-binding proteins GAD domain-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Glycoside hydrolase/deacetylase Carbohydrate binding domain 11
Homeodomain-like SIS domain 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Pseudouridine synthase PUA domain-like 11
Sensory domain-like Sensory domain-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
H-NS histone-like proteins H-NS histone-like proteins 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Concanavalin A-like lectins/glucanases CalX-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Cadherin-like OMPA-like 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
ClpP/crotonase Single hybrid motif 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Cytidine deaminase-like Cytidine deaminase-like 11
ACT-like PYP-like sensor domain (PAS domain) 11
2Fe-2S ferredoxin-like Nucleotide-binding domain 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
Ribosomal protein L6 Ribosomal protein L6 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Ribonuclease H-like RuvA domain 2-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Thiolase-like FabD/lysophospholipase-like 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Ribokinase-like Thiamin phosphate synthase 11
PLP-dependent transferases Rhodanese/Cell cycle control phosphatase 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
L domain-like Protein kinase-like (PK-like) 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Metalloproteases ("zincins"), catalytic domain CalX-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
PIN domain-like Ribonuclease H-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
DPP6 N-terminal domain-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
GroEL equatorial domain-like GroEL apical domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
RuvA domain 2-like RuvA domain 2-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Zn-dependent exopeptidases PKD domain 11
Homeodomain-like TATA-box binding protein-like 11
Carboxypeptidase regulatory domain-like Metallo-dependent phosphatases 11
PA domain Metalloproteases ("zincins"), catalytic domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
OMPA-like TSP type-3 repeat 11
PIN domain-like DNA/RNA polymerases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
PA domain Subtilisin-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Cadherin-like TSP type-3 repeat 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Homeodomain-like Probable bacterial effector-binding domain 11
3-carboxy-cis,cis-mucoante lactonizing enzyme CalX-like 11
Sec-C motif Sec-C motif 11
Periplasmic binding protein-like II Nucleotide cyclase 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Zinc beta-ribbon DNA primase core 11
HCP-like TPR-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Chorismate mutase II ACT-like 11
HAMP domain-like GAF domain-like 11
Globin-like Riboflavin synthase domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
DNase I-like PKD domain 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Protease propeptides/inhibitors Collagen-binding domain 11
YrdC/RibB RibA-like 11
Collagen-binding domain Galactose-binding domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Concanavalin A-like lectins/glucanases Cadherin-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Thiolase-like ACP-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Sec-C motif NTF2-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Phage tail proteins Phage fibre proteins 11
Cadherin-like beta-Roll 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Trypsin-like serine proteases PKD domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Tricorn protease N-terminal domain Tricorn protease domain 2 11
ACT-like Homeodomain-like 11
TATA-box binding protein-like DNA-glycosylase 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Translation proteins PRC-barrel domain 11
Pentapeptide repeat-like CalX-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
PHP domain-like AF1531-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
PurS-like Class I glutamine amidotransferase-like 11
Translation proteins ThrRS/AlaRS common domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
GroEL equatorial domain-like GroEL equatorial domain-like 11
Chorismate mutase II Aldolase 11
ClpP/crotonase Glutathione synthetase ATP-binding domain-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
YajQ-like YajQ-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
4Fe-4S ferredoxins Radical SAM enzymes 11
alpha/beta-Hydrolases OsmC-like 11
GAF domain-like Phosphohistidine domain 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
FKBP-like FKBP-like 11
HCP-like HCP-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
LysM domain L,D-transpeptidase catalytic domain-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Fibronectin type III Integrin alpha N-terminal domain 11
ClpP/crotonase Rudiment single hybrid motif 11
ACT-like Aldolase 11
Pentapeptide repeat-like Voltage-gated potassium channels 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
DPP6 N-terminal domain-like Metallo-dependent hydrolases 11
vWA-like TPR-like 11
PurS-like PurM N-terminal domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Thioredoxin-like TPR-like 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
Tricorn protease domain 2 alpha/beta-Hydrolases 11
PreATP-grasp domain PreATP-grasp domain 11
TGS-like Class II aaRS ABD-related 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
C-terminal effector domain of the bipartite response regulators Tricorn protease N-terminal domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Calcium-dependent phosphotriesterase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Concanavalin A-like lectins/glucanases Galactose-binding domain-like 11
L30e-like alpha/beta knot 11
DPP6 N-terminal domain-like PDZ domain-like 11
Ribokinase-like Nucleotidylyl transferase 11
PUA domain-like alpha/beta knot 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Periplasmic binding protein-like II ACT-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Nqo5-like HydB/Nqo4-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
"Winged helix" DNA-binding domain Ribokinase-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Pentapeptide repeat-like Cadherin-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Tricorn protease domain 2 ClpP/crotonase 11
Translation proteins Translation proteins 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
EAL domain-like CBS-domain pair 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
Bacterial hemolysins Nucleotide cyclase 11
TPR-like TolA/TonB C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
DNA primase core DNA primase DnaG, C-terminal domain 11
alpha-helical ferredoxin ADC-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
DPP6 N-terminal domain-like ClpP/crotonase 11
Acid proteases Glutathione synthetase ATP-binding domain-like 11
E set domains Chitinase insertion domain 11
Carbamate kinase-like PUA domain-like 11
(Trans)glycosidases Starch-binding domain-like 11
PLP-dependent transferases PLP-dependent transferases 11
Lysozyme-like PGBD-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
ISP domain Thiamin diphosphate-binding fold (THDP-binding) 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Trigger factor ribosome-binding domain FKBP-like 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
NTF2-like Isochorismatase-like hydrolases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
Phase 1 flagellin Phase 1 flagellin 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Quinoprotein alcohol dehydrogenase-like EAL domain-like 11
Multiheme cytochromes FAD/NAD(P)-binding domain 11
TGS-like Class II aaRS and biotin synthetases 11
TPR-like PYP-like sensor domain (PAS domain) 11
Purple acid phosphatase, N-terminal domain Metallo-dependent phosphatases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Putative DNA-binding domain Translation proteins 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
RuvA domain 2-like JAB1/MPN domain 11
Cadherin-like Galactose-binding domain-like 11
Subtilisin-like Collagen-binding domain 11
Aldolase AFP III-like domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
PKD domain Carbohydrate binding domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Subtilisin-like Carbohydrate binding domain 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Nucleotidylyl transferase tRNA-binding arm 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Calcium-dependent phosphotriesterase Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Homeodomain-like DNA-glycosylase 11
Thioredoxin-like PDZ domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Tricorn protease domain 2 PDZ domain-like 11
DNA-glycosylase Nudix 11
Barwin-like endoglucanases Sporulation related repeat 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Multiheme cytochromes Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
HIT-like HIT-like 11
GAF domain-like GAF domain-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Cadherin-like Integrin alpha N-terminal domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Quinoprotein alcohol dehydrogenase-like Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
E set domains Starch-binding domain-like 11
GspK insert domain-like GspK insert domain-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
CheY-like CheC-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
PA domain Zn-dependent exopeptidases 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
HisI-like all-alpha NTP pyrophosphatases 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
PreATP-grasp domain Methylglyoxal synthase-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Tricorn protease domain 2 MetI-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Proton glutamate symport protein Periplasmic binding protein-like II 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
3-carboxy-cis,cis-mucoante lactonizing enzyme PKD domain 11
TSP type-3 repeat TSP type-3 repeat 11
Lamin A/C globular tail domain His-Me finger endonucleases 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
cAMP-binding domain-like CBS-domain pair 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
RuvA domain 2-like BRCT domain 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Ribonuclease H-like HRDC-like 11
Glycosyl hydrolase domain Starch-binding domain-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Phage tail proteins Phage tail proteins 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Cupredoxins Cytochrome c 11
Oxidoreductase molybdopterin-binding domain E set domains 11
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
"Winged helix" DNA-binding domain HRDC-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Protein kinase-like (PK-like) HCP-like 11
Trypsin-like serine proteases P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
DsbB-like NHL repeat 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
ALDH-like Dehydroquinate synthase-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
FAD-linked oxidoreductase ALDH-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
CalX-like beta-Roll 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Cupredoxins Carboxypeptidase regulatory domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
DNA clamp DNA clamp 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Cadherin-like vWA-like 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Galactose-binding domain-like PKD domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
C-terminal effector domain of the bipartite response regulators YVTN repeat-like/Quinoprotein amine dehydrogenase 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Metalloproteases ("zincins"), catalytic domain Metalloproteases ("zincins"), catalytic domain 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
Quinoprotein alcohol dehydrogenase-like PYP-like sensor domain (PAS domain) 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
Acetoacetate decarboxylase-like FAD/NAD(P)-binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Histidine-containing phosphotransfer domain, HPT domain HD-domain/PDEase-like 11
L9 N-domain-like Ribonuclease H-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PGBD-like Hedgehog/DD-peptidase 11
Class I glutamine amidotransferase-like Homeodomain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
CBS-domain pair Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
TGS-like ThrRS/AlaRS common domain 11
HAD-like Ribosomal protein S5 domain 2-like 11
Periplasmic binding protein-like II Lysozyme-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
FliG FliG 11
PurS-like FGAM synthase PurL, linker domain 11
CalX-like OMPA-like 11
LysM domain LysM domain 11
Protein kinase-like (PK-like) TPR-like 11
Glutamine synthetase/guanido kinase CBS-domain pair 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Sensory domain-like Nucleotide cyclase 11
Metalloproteases ("zincins"), catalytic domain Cadherin-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Thioredoxin-like Six-hairpin glycosidases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Bacterial muramidases Lysozyme-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Pili subunits GspK insert domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
GIY-YIG endonuclease RuvA domain 2-like 11
Hypothetical protein PA1324 Formin homology 2 domain (FH2 domain) 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
RNase III domain-like dsRNA-binding domain-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Hsp33 domain HSP33 redox switch-like 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
CalX-like vWA-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
YjeF N-terminal domain-like Ribokinase-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
ACP-like ACP-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
RmlC-like cupins RmlC-like cupins 11
Periplasmic binding protein-like II Aldolase 11
PLP-dependent transferases Metallo-hydrolase/oxidoreductase 11
Fibronectin type III Fibronectin type III 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Integrin alpha N-terminal domain NHL repeat 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
ACT-like Formyltransferase 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
ISP domain DHS-like NAD/FAD-binding domain 11
CheC-like Surface presentation of antigens (SPOA) 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Protease propeptides/inhibitors Galactose-binding domain-like 11
gp5 N-terminal domain-like Phage fibre proteins 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Lysozyme-like LysM domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
CalX-like CalX-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PheT/TilS domain Putative DNA-binding domain 11
Tex N-terminal region-like RuvA domain 2-like 11
FabD/lysophospholipase-like ACP-like 11
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Calcium-dependent phosphotriesterase EAL domain-like 11
Nucleic acid-binding proteins BRCT domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Zn-dependent exopeptidases Class I glutamine amidotransferase-like 11
alpha/beta-Hydrolases TPR-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Phage tail proteins gp5 N-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
PurS-like PurM C-terminal domain-like 11
Flavoproteins Riboflavin synthase domain-like 11
ClpS-like TRAP-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
CarD-like TRCF domain-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
HCP-like TolA/TonB C-terminal domain 11
DPP6 N-terminal domain-like Composite domain of metallo-dependent hydrolases 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Periplasmic binding protein-like II GlnB-like 11
HRDC-like HRDC-like 11
ClpP/crotonase PreATP-grasp domain 11
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
PKD domain Cadherin-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Thioredoxin-like Nqo1 middle domain-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Nucleotidyltransferase Nucleotidyltransferase 11
CheY-like PP2C-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
beta-Roll beta-Roll 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Acid proteases Acid proteases 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Formyltransferase FMT C-terminal domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Zn-dependent exopeptidases LysM domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
alpha-helical ferredoxin Formate dehydrogenase/DMSO reductase, domains 1-3 11

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