SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Methylobacterium radiotolerans JCM 2831

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).

Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

749 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 7947
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 541
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 4637
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4634
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4335
Homodimeric domain of signal transducing histidine kinase CheY-like 4133
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 4030
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3715
CheY-like C-terminal effector domain of the bipartite response regulators 295
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 283
PYP-like sensor domain (PAS domain) CheY-like 2725
Thioredoxin-like GST C-terminal domain-like 231
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 228
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 214
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 217
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 217
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 217
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 217
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 212
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 217
cAMP-binding domain-like "Winged helix" DNA-binding domain 202
Nucleotide cyclase EAL domain-like 206
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 204
GroES-like NAD(P)-binding Rossmann-fold domains 204
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 194
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 185
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 177
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 175
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 161
PYP-like sensor domain (PAS domain) Nucleotide cyclase 166
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 152
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 144
GAF domain-like PYP-like sensor domain (PAS domain) 1413
PYP-like sensor domain (PAS domain) EAL domain-like 144
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1413
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 143
Homeodomain-like Homeodomain-like 134
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 133
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 136
GAF domain-like Homodimeric domain of signal transducing histidine kinase 1211
GAF domain-like CheY-like 1211
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 125
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 123
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 127
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 121
CheY-like CheY-like 1111
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 115
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 101
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 104
Thiolase-like Thiolase-like 101
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 91
Calcium ATPase, transduction domain A HAD-like 94
Actin-like ATPase domain Actin-like ATPase domain 93
HAD-like Calcium ATPase, transmembrane domain M 83
P-loop containing nucleoside triphosphate hydrolases MOP-like 82
P-loop containing nucleoside triphosphate hydrolases Translation proteins 87
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 83
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 85
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 87
CheY-like Histidine-containing phosphotransfer domain, HPT domain 77
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 73
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 71
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 73
Class I glutamine amidotransferase-like Homeodomain-like 72
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 74
CheY-like P-loop containing nucleoside triphosphate hydrolases 72
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
(Trans)glycosidases Glycosyl hydrolase domain 64
CheY-like Homeodomain-like 61
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 61
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 64
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 61
"Winged helix" DNA-binding domain PLP-dependent transferases 61
MoeA N-terminal region -like MoeA C-terminal domain-like 62
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 62
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 62
Resolvase-like Homeodomain-like 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
HlyD-like secretion proteins HlyD-like secretion proteins 63
Nucleic acid-binding proteins Nucleic acid-binding proteins 65
Lysozyme-like beta-lactamase/transpeptidase-like 64
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 64
Trypsin-like serine proteases PDZ domain-like 53
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 54
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 53
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 54
PurM N-terminal domain-like PurM C-terminal domain-like 52
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 53
lambda repressor-like DNA-binding domains RmlC-like cupins 51
"Winged helix" DNA-binding domain GAF domain-like 51
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 54
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 53
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 53
Oxidoreductase molybdopterin-binding domain E set domains 52
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
CheY-like Nucleotide cyclase 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
Triger factor/SurA peptide-binding domain-like FKBP-like 44
Enolase N-terminal domain-like Enolase C-terminal domain-like 41
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 41
Alpha-L RNA-binding motif Pseudouridine synthase 43
ADC-like 4Fe-4S ferredoxins 43
Formyltransferase FMT C-terminal domain-like 41
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
PLP-binding barrel Alanine racemase C-terminal domain-like 41
Cytochrome c Cytochrome c 44
E set domains (Trans)glycosidases 43
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
GAF domain-like GAF domain-like 44
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 43
PGBD-like L,D-transpeptidase catalytic domain-like 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 43
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 42
PreATP-grasp domain Rudiment single hybrid motif 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 42
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 42
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 42
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 43
Histidine-containing phosphotransfer domain, HPT domain CheW-like 43
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 31
Galactose mutarotase-like E set domains 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 33
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 31
HCP-like HCP-like 33
CheY-like Methylesterase CheB, C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 31
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 31
NAD(P)-binding Rossmann-fold domains ACT-like 32
RuvA domain 2-like Nucleic acid-binding proteins 33
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 32
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 32
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 33
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 32
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 32
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 33
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 32
Lysozyme-like PGBD-like 31
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Nqo1 middle domain-like Nqo1C-terminal domain-like 33
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
ACT-like ACT-like 33
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 32
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 31
Translation proteins EF-G C-terminal domain-like 33
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 33
Single hybrid motif CoA-dependent acyltransferases 32
Pectin lyase-like Autotransporter 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 32
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
PDZ domain-like PDZ domain-like 31
(Trans)glycosidases (Trans)glycosidases 33
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 33
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
"Winged helix" DNA-binding domain Chorismate lyase-like 31
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 32
E set domains Glycosyl hydrolase domain 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 33
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 31
CheY-like HD-domain/PDEase-like 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 33
ParB/Sulfiredoxin KorB DNA-binding domain-like 31
PYP-like sensor domain (PAS domain) lambda repressor-like DNA-binding domains 32
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 31
Homodimeric domain of signal transducing histidine kinase CheW-like 32
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 32
2Fe-2S ferredoxin-like ADC-like 22
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 21
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 22
CarD-like TRCF domain-like 22
Homeodomain-like SIS domain 21
OMPA-like OMPT-like 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Nudix "Winged helix" DNA-binding domain 22
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Subtilisin-like Autotransporter 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
FliG FliG 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
CheC-like Surface presentation of antigens (SPOA) 22
Globin-like Riboflavin synthase domain-like 21
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Thioredoxin-like Nqo1C-terminal domain-like 22
PH0987 N-terminal domain-like Cyclophilin-like 21
ISP domain Bet v1-like 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 21
Acetyl-CoA synthetase-like ACP-like 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Urease, gamma-subunit Urease, beta-subunit 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Clc chloride channel CBS-domain pair 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 22
L30e-like alpha/beta knot 21
FMN-binding split barrel Riboflavin synthase domain-like 21
Thioredoxin-like Nqo1 middle domain-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
FMN-binding split barrel 2Fe-2S ferredoxin-like 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
PK beta-barrel domain-like PK C-terminal domain-like 21
CheW-like CheY-like 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Phospholipase D/nuclease Phospholipase D/nuclease 22
Cupredoxins Cytochrome c 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Macro domain-like Zn-dependent exopeptidases 21
MetI-like MetI-like 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 22
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 22
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
P-loop containing nucleoside triphosphate hydrolases CarD-like 22
HAMP domain-like PYP-like sensor domain (PAS domain) 22
PDZ domain-like ClpP/crotonase 21
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Regulatory protein AraC Homeodomain-like 22
Thioredoxin-like Nqo1 FMN-binding domain-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Ribbon-helix-helix ACT-like 21
Subtilisin-like Pectin lyase-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 21
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Nucleotidyltransferase ACT-like 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
Adhesin YadA, collagen-binding domain Pili subunits 22
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Ribonuclease H-like HRDC-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Ribonuclease H-like RuvA domain 2-like 11
TPR-like TPR-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
TROVE domain-like vWA-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
gp5 N-terminal domain-like Phage fibre proteins 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
C-terminal effector domain of the bipartite response regulators TPR-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
HMA, heavy metal-associated domain HAD-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain PilZ domain-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Translation proteins "Winged helix" DNA-binding domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Dihydropteroate synthetase-like Methionine synthase domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
ACP-like alpha/beta-Hydrolases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
PIN domain-like DNA/RNA polymerases 11
Single hybrid motif TK C-terminal domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Thioredoxin-like TPR-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
PilZ domain-like PilZ domain-like 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
PheT/TilS domain Putative DNA-binding domain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Nucleotide-diphospho-sugar transferases TPR-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Periplasmic binding protein-like II Voltage-gated potassium channels 11
HAMP domain-like EAL domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Cupredoxins Cupredoxins 11
ACP-like Trimeric LpxA-like enzymes 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Thiolase-like GroES-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Thiolase-like ACP-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
MFS general substrate transporter ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
CO dehydrogenase ISP C-domain like Bet v1-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
ARM repeat ARM repeat 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
dUTPase-like dUTPase-like 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
TGS-like ThrRS/AlaRS common domain 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
TGS-like Class II aaRS and biotin synthetases 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Translation proteins ThrRS/AlaRS common domain 11
YrdC/RibB RibA-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Globin-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
RmlC-like cupins Homeodomain-like 11
UDP-Glycosyltransferase/glycogen phosphorylase P-loop containing nucleoside triphosphate hydrolases 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
ADC-like P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
TGS-like ACT-like 11
Periplasmic binding protein-like II NosL/MerB-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Periplasmic binding protein-like II ACT-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
PGBD-like PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
ISP domain FAD/NAD(P)-binding domain 11
PIN domain-like Ribonuclease H-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
beta-Roll beta-Roll 11
YebC-like PFL-like glycyl radical enzymes 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Bacterial luciferase-like Bacterial luciferase-like 11
Rudiment single hybrid motif Single hybrid motif 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Phage fibre proteins Phage fibre proteins 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
PYP-like sensor domain (PAS domain) PilZ domain-like 11
TGS-like Class II aaRS ABD-related 11
L domain-like Protein kinase-like (PK-like) 11
Lysozyme-like Staphylococcal nuclease 11
Tex N-terminal region-like Ribonuclease H-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Origin of replication-binding domain, RBD-like P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Translation proteins 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
HD-domain/PDEase-like ACT-like 11
SGNH hydrolase SGNH hydrolase 11
Methionine synthase domain Methionine synthase activation domain-like 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
WD40 repeat-like Cytochrome c 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
4Fe-4S ferredoxins Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor 11
DAK1/DegV-like DhaL-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
GroEL equatorial domain-like GroEL apical domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain PreATP-grasp domain 11
Acid phosphatase/Vanadium-dependent haloperoxidase Autotransporter 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
HRDC-like HRDC-like 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
Photosystem II reaction centre subunit H, transmembrane region PRC-barrel domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
Apolipoprotein A-I Apolipoprotein A-I 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Phage tail proteins Phage tail proteins 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
YlxR-like L30e-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
FAD/NAD(P)-binding domain NAD(P)-binding Rossmann-fold domains 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Molybdenum cofactor-binding domain Bet v1-like 11
FAD-linked oxidoreductase ALDH-like 11
Caspase-like HCP-like 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Phage tail proteins Phage fibre proteins 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
FabD/lysophospholipase-like GroES-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Galactose-binding domain-like (Trans)glycosidases 11
Nucleotide-binding domain Nucleotide-binding domain 11
CO dehydrogenase molybdoprotein N-domain-like Bet v1-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
PPK N-terminal domain-like PHP14-like 11
Nucleotide cyclase TPR-like 11
PHP14-like Phospholipase D/nuclease 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Carbamate kinase-like ACT-like 11
MgtE N-terminal domain-like CBS-domain pair 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
alpha-helical ferredoxin ARM repeat 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Tex N-terminal region-like RuvA domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
ClpS-like P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
MbtH-like ACP-like 11
MbtH-like alpha/beta-Hydrolases 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
GroES-like ACP-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Nucleic acid-binding proteins BRCT domain 11
PHP domain-like AF1531-like 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Translation proteins Translation proteins 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Single hybrid motif FAD/NAD(P)-binding domain 11
DNA clamp DNA clamp 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
PP2C-like Protein kinase-like (PK-like) 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase S-adenosyl-L-methionine-dependent methyltransferases 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Poly A polymerase C-terminal region-like ACT-like 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
SIS domain CBS-domain pair 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, peptide-binding domain 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Thioesterase/thiol ester dehydrase-isomerase NAD(P)-binding Rossmann-fold domains 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Ribonuclease H-like DNA/RNA polymerases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
UDP-Glycosyltransferase/glycogen phosphorylase Glycoside hydrolase/deacetylase 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Acid phosphatase/Vanadium-dependent haloperoxidase Pectin lyase-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Bacterial muramidases Lysozyme-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase Nucleotidyltransferase 11
RuvA domain 2-like JAB1/MPN domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
"Winged helix" DNA-binding domain SCP-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase PP2C-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Aldolase SIS domain 11
Flavoproteins Riboflavin synthase domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Thiolase-like FabD/lysophospholipase-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
RuvA domain 2-like BRCT domain 11
ALDH-like ALDH-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
GAF domain-like Phosphohistidine domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
GroES-like GroES-like 11
S-adenosyl-L-methionine-dependent methyltransferases GroES-like 11
HAMP domain-like Nucleotide cyclase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
RuvA domain 2-like RuvA domain 2-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
CheW-like CheW-like 11
HAMP domain-like CheY-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
Radical SAM enzymes RuvA domain 2-like 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
ClpP/crotonase ClpP/crotonase 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Nucleic acid-binding proteins GAD domain-like 11
PreATP-grasp domain Single hybrid motif 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
FabD/lysophospholipase-like ACP-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
FabD/lysophospholipase-like S-adenosyl-L-methionine-dependent methyltransferases 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
GAF domain-like Nucleotide cyclase 11
TerB-like Chaperone J-domain 11
YjeF N-terminal domain-like Ribokinase-like 11
CBS-domain pair MgtE membrane domain-like 11
ParB/Sulfiredoxin C-terminal domain of transcriptional repressors 11
Nucleic acid-binding proteins PheT/TilS domain 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
PUA domain-like alpha/beta knot 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
HCP-like PGBD-like 11
Phage tail proteins gp5 N-terminal domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Trigger factor ribosome-binding domain FKBP-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
MFS general substrate transporter Homodimeric domain of signal transducing histidine kinase 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Nucleotidyltransferase TGS-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
cAMP-binding domain-like FabD/lysophospholipase-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
cAMP-binding domain-like EAL domain-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, catalytic domain 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
ADC-like Cdc48 domain 2-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
SpoIIaa-like cAMP-binding domain-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
LysM domain Duplicated hybrid motif 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Carbamate kinase-like PUA domain-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
FAD/NAD(P)-binding domain Thioredoxin-like 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Hsp33 domain HSP33 redox switch-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases HAD-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
MFS general substrate transporter PYP-like sensor domain (PAS domain) 11
beta-Barrel protease inhibitors beta-Barrel protease inhibitors 11
Translation proteins PRC-barrel domain 11
HD-domain/PDEase-like TGS-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Translation proteins Ribosomal protein S5 domain 2-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
DNA-glycosylase Nudix 11
TATA-box binding protein-like DNA-glycosylase 11
MbtH-like Acetyl-CoA synthetase-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
DeoB insert domain-like Alkaline phosphatase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
beta-lactamase/transpeptidase-like Staphylococcal nuclease 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Ribosomal protein L6 Ribosomal protein L6 11
beta-lactamase/transpeptidase-like Sporulation related repeat 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
RNase III domain-like dsRNA-binding domain-like 11
AGR C 984p-like AGR C 984p-like 11
2Fe-2S ferredoxin-like Bet v1-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Zinc beta-ribbon DNA primase core 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]