SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Caulobacter sp. K31

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

713 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5923
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 513
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 361
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3414
CheY-like Homodimeric domain of signal transducing histidine kinase 3313
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 304
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 303
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2918
Thioredoxin-like GST C-terminal domain-like 281
GroES-like NAD(P)-binding Rossmann-fold domains 223
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2115
Thiolase-like Thiolase-like 212
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2013
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 184
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 166
CheY-like PYP-like sensor domain (PAS domain) 1611
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 166
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1610
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 166
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 166
Homeodomain-like Homeodomain-like 164
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 166
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 166
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 154
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 151
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 147
CheY-like C-terminal effector domain of the bipartite response regulators 132
Actin-like ATPase domain Actin-like ATPase domain 124
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 124
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 115
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 111
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 112
(Trans)glycosidases Glycosyl hydrolase domain 105
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 101
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 94
PreATP-grasp domain Rudiment single hybrid motif 94
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 96
Calcium ATPase, transduction domain A HAD-like 96
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 95
HAD-like Calcium ATPase, transmembrane domain M 96
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 83
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 81
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 82
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 82
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 82
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 72
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
cAMP-binding domain-like "Winged helix" DNA-binding domain 71
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 75
"Winged helix" DNA-binding domain GAF domain-like 71
HlyD-like secretion proteins HlyD-like secretion proteins 73
ISP domain Bet v1-like 72
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 74
Rudiment single hybrid motif Single hybrid motif 63
Lysozyme-like beta-lactamase/transpeptidase-like 63
Class I glutamine amidotransferase-like Homeodomain-like 61
Homeodomain-like Ribonuclease H-like 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
PreATP-grasp domain Single hybrid motif 63
ClpP/crotonase ClpP/crotonase 63
Glutathione synthetase ATP-binding domain-like Single hybrid motif 63
ParB/Sulfiredoxin KorB DNA-binding domain-like 51
DPP6 N-terminal domain-like alpha/beta-Hydrolases 52
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 51
TPR-like P-loop containing nucleoside triphosphate hydrolases 53
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 51
GAF domain-like CheY-like 55
"Winged helix" DNA-binding domain Chorismate lyase-like 51
Nucleotide cyclase EAL domain-like 53
Phospholipase D/nuclease Phospholipase D/nuclease 54
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 55
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Enolase N-terminal domain-like Enolase C-terminal domain-like 51
PLP-binding barrel Alanine racemase C-terminal domain-like 43
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 41
FKBP-like Triger factor/SurA peptide-binding domain-like 44
Galactose-binding domain-like (Trans)glycosidases 43
CheY-like Homeodomain-like 41
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 43
PYP-like sensor domain (PAS domain) EAL domain-like 42
TPR-like TPR-like 43
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 42
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 42
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 41
beta-Roll beta-Roll 44
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 43
CheY-like CheY-like 43
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
PYP-like sensor domain (PAS domain) Nucleotide cyclase 42
Alpha-L RNA-binding motif Pseudouridine synthase 42
GAF domain-like PYP-like sensor domain (PAS domain) 44
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 41
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 42
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 41
Trypsin-like serine proteases PDZ domain-like 42
CheY-like P-loop containing nucleoside triphosphate hydrolases 41
Single hybrid motif CoA-dependent acyltransferases 41
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
RmlC-like cupins Homeodomain-like 31
GAF domain-like Homodimeric domain of signal transducing histidine kinase 33
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
Pentapeptide repeat-like Pentapeptide repeat-like 31
Cytochrome c Cytochrome c 33
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
PDZ domain-like PDZ domain-like 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Translation proteins EF-G C-terminal domain-like 33
Cupredoxins Cupredoxins 33
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
Histidine-containing phosphotransfer domain, HPT domain CheW-like 31
L30e-like alpha/beta knot 31
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 31
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
PurM N-terminal domain-like PurM C-terminal domain-like 32
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
ACT-like ACT-like 33
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 32
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 31
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 33
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 31
CheY-like Methylesterase CheB, C-terminal domain 31
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 32
(Trans)glycosidases Anthrax protective antigen 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Homodimeric domain of signal transducing histidine kinase CheW-like 31
Galactose-binding domain-like SGNH hydrolase 21
Acid proteases Acid proteases 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
alpha/beta-Hydrolases Galactose-binding domain-like 21
Macro domain-like Zn-dependent exopeptidases 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
OMPA-like OmpA-like 21
Pectin lyase-like Calcium-dependent phosphotriesterase 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
"Winged helix" DNA-binding domain Actin-like ATPase domain 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 22
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
CheY-like Nucleotide cyclase 21
Bacterial muramidases Lysozyme-like 21
Resolvase-like Homeodomain-like 21
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 22
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 21
RmlC-like cupins RmlC-like cupins 21
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 22
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 21
alpha/beta-Hydrolases EreA/ChaN-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 22
Galactose mutarotase-like Glycosyl hydrolase domain 22
Galactose mutarotase-like Anthrax protective antigen 22
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 22
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
PGBD-like L,D-transpeptidase catalytic domain-like 22
Nucleotidyltransferase ACT-like 22
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
PRTase-like alpha/beta-Hydrolases 21
PRTase-like EreA/ChaN-like 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
HMA, heavy metal-associated domain HAD-like 22
Ferritin-like Calcium ATPase, transmembrane domain M 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
PA domain Zn-dependent exopeptidases 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
Galactose mutarotase-like (Trans)glycosidases 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 22
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
GroES-like GroES-like 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 22
"Winged helix" DNA-binding domain PLP-dependent transferases 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
Ferritin-like Calcium ATPase, transduction domain A 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Glycosyl hydrolase domain Galactose-binding domain-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
beta-Roll Concanavalin A-like lectins/glucanases 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
ACT-like Formyltransferase 21
Nucleic acid-binding proteins RuvA domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 21
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
Ferritin-like HAD-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Pectin lyase-like Pectin lyase-like 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 22
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Thiolase-like Nucleic acid-binding proteins 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Anthrax protective antigen Glycosyl hydrolase domain 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
MFS general substrate transporter MFS general substrate transporter 11
PLC-like phosphodiesterases Acid phosphatase/Vanadium-dependent haloperoxidase 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
DNA-glycosylase Nudix 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Globin-like Clavaminate synthase-like 11
YlxR-like L30e-like 11
Concanavalin A-like lectins/glucanases beta-Galactosidase/glucuronidase domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PK beta-barrel domain-like PK C-terminal domain-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Globin-like Riboflavin synthase domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Nucleotidylyl transferase Riboflavin kinase-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Poly A polymerase C-terminal region-like ACT-like 11
HD-domain/PDEase-like ACT-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Cyclophilin-like PH0987 N-terminal domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Single hybrid motif ClpP/crotonase 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Tropomyosin TPR-like 11
TATA-box binding protein-like DNA-glycosylase 11
DNase I-like beta-Roll 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Cyclophilin-like Cyclophilin-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Duplicated hybrid motif Phosphoenolpyruvate/pyruvate domain 11
MFS general substrate transporter CheY-like 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
3-carboxy-cis,cis-mucoante lactonizing enzyme Calcium-dependent phosphotriesterase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Duplicated hybrid motif Phosphohistidine domain 11
dUTPase-like dUTPase-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
MFS general substrate transporter ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Zn-dependent exopeptidases Class I glutamine amidotransferase-like 11
MFS general substrate transporter Homodimeric domain of signal transducing histidine kinase 11
Zinc beta-ribbon DNA primase core 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Ribonuclease H-like mu transposase, C-terminal domain 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
TGS-like ACT-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
Duplicated hybrid motif HPr-like 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Arabinanase/levansucrase/invertase Galactose-binding domain-like 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Glycoside hydrolase/deacetylase Nucleotide-diphospho-sugar transferases 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
PIN domain-like Ribonuclease H-like 11
Beta-D-glucan exohydrolase, C-terminal domain Anthrax protective antigen 11
Thioredoxin-like Thioredoxin-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Pentapeptide repeat-like 11
Cadherin-like Cadherin-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
YWTD domain beta-Roll 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
beta-Roll Formin homology 2 domain (FH2 domain) 11
S-adenosyl-L-methionine-dependent methyltransferases FAD-linked reductases, C-terminal domain 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Rudiment single hybrid motif Cyclophilin-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
CBS-domain pair ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
beta-lactamase/transpeptidase-like TPR-like 11
Pili subunits Pili subunits 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
MetI-like Periplasmic binding protein-like II 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
beta-Galactosidase/glucuronidase domain Invasin/intimin cell-adhesion fragments 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
NTF2-like NTF2-like 11
Starch-binding domain-like Porins 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Concanavalin A-like lectins/glucanases Formin homology 2 domain (FH2 domain) 11
Ribonuclease H-like DNA/RNA polymerases 11
PheT/TilS domain Putative DNA-binding domain 11
Thioredoxin-like TPR-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
CheC-like Surface presentation of antigens (SPOA) 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Toll/Interleukin receptor TIR domain TPR-like 11
DNA clamp DNA clamp 11
Clc chloride channel CBS-domain pair 11
Glucose permease domain IIB Glucose permease domain IIB 11
Calcium-dependent phosphotriesterase NHL repeat 11
Flavoproteins Riboflavin synthase domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
cAMP-binding domain-like FAD/NAD(P)-binding domain 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Lysozyme-like PGBD-like 11
TGS-like ThrRS/AlaRS common domain 11
alpha-helical ferredoxin ARM repeat 11
Calcium-dependent phosphotriesterase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Barwin-like endoglucanases Sporulation related repeat 11
Nucleic acid-binding proteins BRCT domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Ribbon-helix-helix ACT-like 11
"Winged helix" DNA-binding domain Phospholipase D/nuclease 11
DNA methylase specificity domain DNA methylase specificity domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Serine metabolism enzymes domain ACT-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
Nucleotidyltransferase TGS-like 11
PHP14-like Phospholipase D/nuclease 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Carbamate kinase-like ACT-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Ribonuclease H-like HRDC-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
HPr-like Phosphohistidine domain 11
GAF domain-like Phosphohistidine domain 11
Homeodomain-like Probable bacterial effector-binding domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Translation proteins Translation proteins 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
beta-Roll Cadherin-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Nucleic acid-binding proteins GAD domain-like 11
Cyclophilin-like Single hybrid motif 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
alpha/beta-Hydrolases AhpD-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 11
MOP-like MOP-like 11
PIN domain-like DNA/RNA polymerases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
"Winged helix" DNA-binding domain HRDC-like 11
Periplasmic binding protein-like II ACT-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
"Winged helix" DNA-binding domain MOP-like 11
Tricorn protease domain 2 alpha/beta-Hydrolases 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Galactose mutarotase-like E set domains 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
PreATP-grasp domain ClpP/crotonase 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Galactose-binding domain-like Invasin/intimin cell-adhesion fragments 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
PUA domain-like alpha/beta knot 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
beta-Roll Integrin alpha N-terminal domain 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
TerB-like Chaperone J-domain 11
RNase III domain-like dsRNA-binding domain-like 11
Concanavalin A-like lectins/glucanases Galactose-binding domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
CBS-domain pair CheY-like 11
CarD-like TRCF domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Duplicated hybrid motif Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Phage tail proteins gp5 N-terminal domain-like 11
Nucleotide-diphospho-sugar transferases HAD-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Hsp33 domain HSP33 redox switch-like 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
Trigger factor ribosome-binding domain FKBP-like 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
Carboxypeptidase regulatory domain-like Porins 11
PPK N-terminal domain-like PHP14-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
PDZ domain-like ClpP/crotonase 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
JAB1/MPN domain Cysteine proteinases 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
alpha/beta-Hydrolases TPR-like 11
Ribokinase-like Nucleotidylyl transferase 11
LysM domain LysM domain 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
TGS-like Class II aaRS ABD-related 11
HRDC-like HRDC-like 11
Single hybrid motif TK C-terminal domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
Formin homology 2 domain (FH2 domain) Subtilisin-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
FKBP-like FKBP-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
HCP-like PGBD-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Putative DNA-binding domain Citrate synthase 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
GroEL-intermediate domain like GroEL apical domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
HD-domain/PDEase-like Nucleotidyltransferase 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Aldolase AFP III-like domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
alpha/beta-Hydrolases HIT-like 11
PLP-dependent transferases NAD(P)-binding Rossmann-fold domains 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Flagellar hook protein flgE Flagellar hook protein flgE 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Formyltransferase FMT C-terminal domain-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
PH0987 N-terminal domain-like Single hybrid motif 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Rhodanese/Cell cycle control phosphatase Multiheme cytochromes 11
Nucleotidylyl transferase tRNA-binding arm 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase C-terminal effector domain of the bipartite response regulators 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-binding domain 11
Chemotaxis phosphatase CheZ Methyl-accepting chemotaxis protein (MCP) signaling domain 11
cAMP-binding domain-like FabD/lysophospholipase-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Kelch motif Galactose oxidase, central domain 11
Translation proteins ThrRS/AlaRS common domain 11
Carbamate kinase-like PUA domain-like 11
CBS-domain pair MgtE membrane domain-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Transmembrane di-heme cytochromes YceI-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
LysM domain Duplicated hybrid motif 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Six-hairpin glycosidases Galactose-binding domain-like 11
Concanavalin A-like lectins/glucanases (Trans)glycosidases 11
Hypothetical protein PA1324 Metallo-dependent phosphatases 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
(Trans)glycosidases Glycoside hydrolase/deacetylase 11
Nucleic acid-binding proteins PheT/TilS domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Glycosyl hydrolase domain Glycosyl hydrolase domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
CheW-like CheW-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
YjeF N-terminal domain-like Ribokinase-like 11
TGS-like Class II aaRS and biotin synthetases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
(Trans)glycosidases Invasin/intimin cell-adhesion fragments 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
NHL repeat ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
RuvA domain 2-like BRCT domain 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Rudiment single hybrid motif ClpP/crotonase 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
SGNH hydrolase TPR-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Autotransporter Autotransporter 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Translation proteins PRC-barrel domain 11
HD-domain/PDEase-like TGS-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Homeodomain-like TATA-box binding protein-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Ribosomal protein L6 Ribosomal protein L6 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nudix "Winged helix" DNA-binding domain 11
FliG FliG 11
Homeodomain-like DNA-glycosylase 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
FAD-linked oxidoreductase ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
PreATP-grasp domain Cyclophilin-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]