SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Leptothrix cholodnii SP-6

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

736 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6128
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 441
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3314
CheY-like C-terminal effector domain of the bipartite response regulators 284
PYP-like sensor domain (PAS domain) Nucleotide cyclase 2617
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 2621
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2618
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 2518
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2416
Nucleotide cyclase EAL domain-like 2415
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 234
Homodimeric domain of signal transducing histidine kinase CheY-like 2216
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 205
Actin-like ATPase domain Actin-like ATPase domain 206
PYP-like sensor domain (PAS domain) CheY-like 1813
PYP-like sensor domain (PAS domain) EAL domain-like 1713
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 1611
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 1510
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 143
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 147
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 134
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 133
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 121
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 122
CheY-like Histidine-containing phosphotransfer domain, HPT domain 1210
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 114
Thiolase-like Thiolase-like 111
Thioredoxin-like GST C-terminal domain-like 111
P-loop containing nucleoside triphosphate hydrolases MOP-like 111
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 115
Cytochrome c Cytochrome c 115
CheY-like CheY-like 109
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 106
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 105
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 101
cAMP-binding domain-like "Winged helix" DNA-binding domain 101
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 94
"Winged helix" DNA-binding domain GAF domain-like 91
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 97
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 95
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 91
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 94
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 86
CheY-like Homeodomain-like 83
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 83
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 83
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 82
Cupredoxins Cupredoxins 86
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 84
GroES-like NAD(P)-binding Rossmann-fold domains 82
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 82
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 82
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 72
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 75
CheY-like P-loop containing nucleoside triphosphate hydrolases 72
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 72
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 74
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 74
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 72
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 72
(Trans)glycosidases Glycosyl hydrolase domain 76
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 72
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
PreATP-grasp domain Rudiment single hybrid motif 62
CheY-like Nucleotide cyclase 64
FKBP-like Triger factor/SurA peptide-binding domain-like 64
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 61
Homeodomain-like Homeodomain-like 63
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 64
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 62
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 66
HAD-like Calcium ATPase, transmembrane domain M 54
Trypsin-like serine proteases PDZ domain-like 52
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 52
GAF domain-like Homeodomain-like 53
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 51
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
Calcium ATPase, transduction domain A HAD-like 54
Translation proteins EF-G C-terminal domain-like 53
Alpha-L RNA-binding motif Pseudouridine synthase 53
PurM N-terminal domain-like PurM C-terminal domain-like 52
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
Histidine-containing phosphotransfer domain, HPT domain CheW-like 52
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 54
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 52
HAMP domain-like PYP-like sensor domain (PAS domain) 55
4Fe-4S ferredoxins FAD/NAD(P)-binding domain 42
CheY-like EAL domain-like 43
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 43
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 41
CheY-like Methylesterase CheB, C-terminal domain 41
ACT-like ACT-like 43
Homodimeric domain of signal transducing histidine kinase CheW-like 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
MetI-like MetI-like 42
Fibronectin type III Fibronectin type III 43
PYP-like sensor domain (PAS domain) GAF domain-like 44
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Lysozyme-like beta-lactamase/transpeptidase-like 43
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 42
RuvA domain 2-like Nucleic acid-binding proteins 33
Thioredoxin-like Thioredoxin-like 33
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 32
Nucleotidyltransferase HD-domain/PDEase-like 33
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
Homeodomain-like SIS domain 32
ClpP/crotonase ClpP/crotonase 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
HAMP domain-like EAL domain-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 32
HAMP domain-like Nucleotide cyclase 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 32
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 31
Folate-binding domain Aminomethyltransferase beta-barrel domain 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
PDZ domain-like PDZ domain-like 32
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
ACT-like Formyltransferase 31
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 32
Nqo1 middle domain-like Nqo1C-terminal domain-like 32
ISP domain Bet v1-like 31
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
GAF domain-like CheY-like 33
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 32
"Winged helix" DNA-binding domain PLP-dependent transferases 31
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 31
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 32
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
GAF domain-like Nucleotide cyclase 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 32
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 31
GAF domain-like EAL domain-like 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Multiheme cytochromes Multiheme cytochromes 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Homeodomain-like Ribonuclease H-like 31
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 33
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
CheY-like HD-domain/PDEase-like 31
Regulatory protein AraC Homeodomain-like 32
TPR-like TPR-like 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
alpha-helical ferredoxin Nucleotide-binding domain 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 22
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 22
C-terminal effector domain of the bipartite response regulators TPR-like 22
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Translation proteins Ribosomal protein S5 domain 2-like 21
HD-domain/PDEase-like GAF domain-like 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
Rudiment single hybrid motif Single hybrid motif 21
Thioredoxin-like Nqo1C-terminal domain-like 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
HMA, heavy metal-associated domain HAD-like 22
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
PLP-binding barrel Alanine racemase C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
CalX-like beta-Roll 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
GAF domain-like GAF domain-like 22
Nucleotidyltransferase ACT-like 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
Phospholipase D/nuclease Phospholipase D/nuclease 22
Nucleotidyltransferase TGS-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
HAMP domain-like GAF domain-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
Cytochrome c Periplasmic binding protein-like I 21
PreATP-grasp domain Single hybrid motif 21
Thioredoxin-like Nqo1 FMN-binding domain-like 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 22
L30e-like alpha/beta knot 21
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
CalX-like CalX-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Thioredoxin-like Nqo1 middle domain-like 21
YrdC/RibB RibA-like 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 22
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
DAK1/DegV-like DhaL-like 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleotide cyclase TPR-like 22
Actin-like ATPase domain HD-domain/PDEase-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
HD-domain/PDEase-like ACT-like 22
beta-Roll beta-Roll 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
"Winged helix" DNA-binding domain Chorismate lyase-like 21
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
E set domains Glycosyl hydrolase domain 22
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 21
Single hybrid motif CoA-dependent acyltransferases 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 22
HD-domain/PDEase-like TGS-like 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 22
RmlC-like cupins Homeodomain-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Aldolase post-HMGL domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
E set domains (Trans)glycosidases 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Formyltransferase FMT C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Nucleic acid-binding proteins GAD domain-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PreATP-grasp domain PreATP-grasp domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
TGS-like Class II aaRS and biotin synthetases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Trypsin-like serine proteases P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like BRCT domain 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Cupredoxins Fibronectin type III 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
HAMP domain-like CheY-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
PK beta-barrel domain-like PK C-terminal domain-like 11
FMT C-terminal domain-like ClpP/crotonase 11
PGBD-like Periplasmic binding protein-like II 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
TATA-box binding protein-like DNA-glycosylase 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
RuvA domain 2-like MCP/YpsA-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
PGBD-like PGBD-like 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Macro domain-like Zn-dependent exopeptidases 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
Carbamate kinase-like ACT-like 11
YajQ-like YajQ-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
DNA-glycosylase Nudix 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
CheC-like Surface presentation of antigens (SPOA) 11
Nucleotide cyclase SMAD/FHA domain 11
Class I glutamine amidotransferase-like Dimeric alpha+beta barrel 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
(Trans)glycosidases Anthrax protective antigen 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
FKBP-like FKBP-like 11
RNase III domain-like dsRNA-binding domain-like 11
PHP14-like Phospholipase D/nuclease 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
TK C-terminal domain-like Aldolase 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
Pili subunits GspK insert domain-like 11
PIN domain-like DNA/RNA polymerases 11
UraD-Like Bacterial exopeptidase dimerisation domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Translation proteins PRC-barrel domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Translation proteins Translation proteins 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
Homeodomain-like DNA-glycosylase 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Galactose mutarotase-like (Trans)glycosidases 11
Lysozyme-like Lysozyme-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Cytochrome c Multiheme cytochromes 11
NTF2-like FAD/NAD(P)-binding domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
gp5 N-terminal domain-like Phage fibre proteins 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
Cadherin-like Cadherin-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases PLP-dependent transferases 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Galactose-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
TPR-like NTF2-like 11
P-loop containing nucleoside triphosphate hydrolases WD40 repeat-like 11
Nucleotidylyl transferase tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
GroES-like GroES-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
PurS-like FGAM synthase PurL, linker domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Sensory domain-like HAMP domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
alpha-helical ferredoxin alpha-helical ferredoxin 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
MesJ substrate recognition domain-like PheT/TilS domain 11
YegP-like YegP-like 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Tex N-terminal region-like RuvA domain 2-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
CarD-like TRCF domain-like 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
TGS-like ThrRS/AlaRS common domain 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
TGS-like Class II aaRS ABD-related 11
Pectin lyase-like Cadherin-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
UraD-Like Zn-dependent exopeptidases 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
HIT-like HIT-like 11
FliG FliG 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Ribonuclease H-like RuvA domain 2-like 11
vWA-like beta-Roll 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
RmlC-like cupins AhpD-like 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Phage tail proteins gp5 N-terminal domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Tex N-terminal region-like Ribonuclease H-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Cadherin-like C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
TPR-like Carbohydrate-binding domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Chorismate mutase II ACT-like 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Globin-like Cobalamin (vitamin B12)-binding domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Resolvase-like Homeodomain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like RuvA domain 2-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
P-loop containing nucleoside triphosphate hydrolases UDP-Glycosyltransferase/glycogen phosphorylase 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
Phage tail proteins Phage fibre proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Actin-like ATPase domain Homeodomain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Bacterial muramidases Lysozyme-like 11
EspE N-terminal domain-like EspE N-terminal domain-like 11
DNA methylase specificity domain DNA methylase specificity domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Lysozyme-like PGBD-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Thioesterase/thiol ester dehydrase-isomerase Acyl-CoA N-acyltransferases (Nat) 11
Actin-like ATPase domain SIS domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
PurS-like Class I glutamine amidotransferase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Putative DNA-binding domain CheY-like 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Barwin-like endoglucanases Sporulation related repeat 11
PheT/TilS domain Putative DNA-binding domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
WD40 repeat-like WD40 repeat-like 11
DNA clamp DNA clamp 11
cAMP-binding domain-like CBS-domain pair 11
Lysozyme-like LysM domain 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like Six-hairpin glycosidases 11
Subtilisin-like Invasin/intimin cell-adhesion fragments 11
Subtilisin-like Collagen-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
LigB-like LigB-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Periplasmic binding protein-like II OmpA-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Bet v1-like Bet v1-like 11
YgfB-like Sec-C motif 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Diaminopimelate epimerase-like Periplasmic binding protein-like II 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Thioredoxin-like Cytochrome c 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
EPT/RTPC-like P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like TPR-like 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
E set domains E set domains 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
(Trans)glycosidases Class I glutamine amidotransferase-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
CheW-like CheW-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
2Fe-2S ferredoxin-like FAD/NAD(P)-binding domain 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Phage fibre proteins Phage fibre proteins 11
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
PurS-like PurM N-terminal domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Chorismate mutase II Periplasmic binding protein-like II 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
(Trans)glycosidases Glycoside hydrolase/deacetylase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Zinc beta-ribbon DNA primase core 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
L domain-like Protein kinase-like (PK-like) 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
PUA domain-like alpha/beta knot 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Homeodomain-like TATA-box binding protein-like 11
2Fe-2S ferredoxin-like ADC-like 11
Thiamin diphosphate-binding fold (THDP-binding) Aldolase 11
Protein kinase-like (PK-like) HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Periplasmic binding protein-like II ACT-like 11
PurS-like PurM C-terminal domain-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Outer membrane efflux proteins (OEP) NTF2-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
PRTase-like PRTase-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
TGS-like ACT-like 11
Heme-dependent peroxidases beta-Roll 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Beta-D-glucan exohydrolase, C-terminal domain Anthrax protective antigen 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Hsp33 domain HSP33 redox switch-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Putative DNA-binding domain Translation proteins 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Phage tail proteins Phage tail proteins 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Pectin lyase-like Galactose-binding domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Cupredoxins Cytochrome c 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Trigger factor ribosome-binding domain FKBP-like 11
PIN domain-like Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
FAD-linked oxidoreductase ALDH-like 11
SMAD/FHA domain SMAD/FHA domain 11
Single hybrid motif Single hybrid motif 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Ribonuclease H-like DNA/RNA polymerases 11
CalX-like vWA-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Translation proteins ThrRS/AlaRS common domain 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
CheY-like TPR-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Barwin-like endoglucanases PHL pollen allergen 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Ribokinase-like Thiamin phosphate synthase 11
PP2C-like Protein kinase-like (PK-like) 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Toll/Interleukin receptor TIR domain P-loop containing nucleoside triphosphate hydrolases 11
PPK N-terminal domain-like PHP14-like 11
L,D-transpeptidase catalytic domain-like NTF2-like 11
4Fe-4S ferredoxins ADC-like 11
Formyltransferase ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
CheW-like CheY-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Protein kinase-like (PK-like) Adenine nucleotide alpha hydrolases-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Metalloproteases ("zincins"), catalytic domain Collagen-binding domain 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Protein kinase-like (PK-like) cAMP-binding domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
TPR-like L,D-transpeptidase catalytic domain-like 11
PDZ domain-like ClpP/crotonase 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
Carbamate kinase-like PUA domain-like 11
Nucleic acid-binding proteins BRCT domain 11

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