SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Delftia acidovorans SPH-1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

775 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1642
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6326
CheY-like C-terminal effector domain of the bipartite response regulators 353
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 333
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3113
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 262
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 254
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 236
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 236
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 236
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 236
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 236
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 235
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 236
"Winged helix" DNA-binding domain GAF domain-like 221
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 226
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 214
Thioredoxin-like GST C-terminal domain-like 191
GroES-like NAD(P)-binding Rossmann-fold domains 192
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 183
Actin-like ATPase domain Actin-like ATPase domain 186
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1817
Nucleotide cyclase EAL domain-like 1710
Homeodomain-like Homeodomain-like 165
"Winged helix" DNA-binding domain PLP-dependent transferases 161
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1612
Homodimeric domain of signal transducing histidine kinase CheY-like 1615
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1612
Thiolase-like Thiolase-like 153
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1512
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1510
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 154
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 144
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 145
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 135
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 1310
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 139
cAMP-binding domain-like "Winged helix" DNA-binding domain 122
Cytochrome c Cytochrome c 126
PYP-like sensor domain (PAS domain) EAL domain-like 116
P-loop containing nucleoside triphosphate hydrolases MOP-like 111
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 115
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 112
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 102
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 106
Enolase N-terminal domain-like Enolase C-terminal domain-like 102
PreATP-grasp domain Rudiment single hybrid motif 103
P-loop containing nucleoside triphosphate hydrolases Translation proteins 106
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 103
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 91
PYP-like sensor domain (PAS domain) CheY-like 87
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 86
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 87
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 83
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 81
Calcium ATPase, transduction domain A HAD-like 87
Homeodomain-like Ribonuclease H-like 82
HAD-like Calcium ATPase, transmembrane domain M 87
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 75
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 73
CheY-like Homeodomain-like 72
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 75
RmlC-like cupins Homeodomain-like 71
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 74
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 72
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 74
ISP domain Bet v1-like 61
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 62
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 65
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 62
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 61
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 62
Alpha-L RNA-binding motif Pseudouridine synthase 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
Translation proteins EF-G C-terminal domain-like 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 55
Aconitase iron-sulfur domain LeuD/IlvD-like 53
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 53
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 51
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 51
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 53
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 51
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
Phospholipase D/nuclease Phospholipase D/nuclease 54
CheY-like P-loop containing nucleoside triphosphate hydrolases 51
ParB/Sulfiredoxin KorB DNA-binding domain-like 52
Homeodomain-like SIS domain 52
CheY-like Histidine-containing phosphotransfer domain, HPT domain 55
Regulatory protein AraC Homeodomain-like 51
Triger factor/SurA peptide-binding domain-like FKBP-like 55
ClpP/crotonase ClpP/crotonase 52
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 53
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
Phage tail proteins Phage fibre proteins 42
Glutathione synthetase ATP-binding domain-like Single hybrid motif 42
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 43
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
HMA, heavy metal-associated domain HAD-like 44
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Phage tail proteins Phage tail proteins 42
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 43
GAF domain-like Homeodomain-like 44
CheY-like Nucleotide cyclase 43
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 44
CBS-domain pair FAD-binding/transporter-associated domain-like 41
CheY-like CheY-like 44
Phage fibre proteins Phage fibre proteins 42
PurM N-terminal domain-like PurM C-terminal domain-like 43
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 44
PreATP-grasp domain Single hybrid motif 42
"Winged helix" DNA-binding domain Chorismate lyase-like 41
Phage tail proteins gp5 N-terminal domain-like 42
MetI-like MetI-like 42
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 42
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 44
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
gp5 N-terminal domain-like Phage fibre proteins 42
ACT-like ACT-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 43
Rudiment single hybrid motif Single hybrid motif 42
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 32
Acetyl-CoA synthetase-like ACP-like 33
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 33
YgfB-like Sec-C motif 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
TPR-like TPR-like 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Nucleotidyltransferase ACT-like 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 31
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 33
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 33
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 31
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
lambda repressor-like DNA-binding domains LexA/Signal peptidase 31
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
HlyD-like secretion proteins HlyD-like secretion proteins 32
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 32
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 32
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
HD-domain/PDEase-like ACT-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 32
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 31
ACP-like ACP-like 33
HD-domain/PDEase-like Nucleotidyltransferase 32
Cupredoxins Cupredoxins 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 32
His-Me finger endonucleases DNA-binding domain 31
RuvA domain 2-like Nucleic acid-binding proteins 33
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 33
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
alpha/beta-Hydrolases Galactose-binding domain-like 32
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 33
Class I glutamine amidotransferase-like Homeodomain-like 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 32
GAF domain-like EAL domain-like 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 31
GAF domain-like Homodimeric domain of signal transducing histidine kinase 33
PYP-like sensor domain (PAS domain) Homeodomain-like 33
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
GAF domain-like Nucleotide cyclase 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
CoA-dependent acyltransferases ACP-like 33
CoA-dependent acyltransferases CoA-dependent acyltransferases 33
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 31
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 33
Trypsin-like serine proteases PDZ domain-like 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
P-loop containing nucleoside triphosphate hydrolases TPR-like 22
GAF domain-like CheY-like 22
Flavoproteins Riboflavin synthase domain-like 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
E set domains E set domains 22
Nudix "Winged helix" DNA-binding domain 21
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
PDZ domain-like PDZ domain-like 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
GroES-like GroES-like 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
PDZ domain-like ClpP/crotonase 22
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
HCP-like HCP-like 22
Single hybrid motif CoA-dependent acyltransferases 22
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
alpha-helical ferredoxin Nucleotide-binding domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
CheW-like CheY-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
L30e-like alpha/beta knot 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
PLP-binding barrel Alanine racemase C-terminal domain-like 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
PH0987 N-terminal domain-like Cyclophilin-like 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
HD-domain/PDEase-like TGS-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Aldolase post-HMGL domain-like 21
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
EAL domain-like HD-domain/PDEase-like 21
Nucleotidyltransferase TGS-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
CheY-like EAL domain-like 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
DsbC/DsbG N-terminal domain-like Thioredoxin-like 22
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 22
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 22
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
TGS-like ACT-like 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Translation proteins ThrRS/AlaRS common domain 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
PapD-like Periplasmic chaperone C-domain 21
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
GAF domain-like PYP-like sensor domain (PAS domain) 22
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 21
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Translation proteins Ribosomal protein S5 domain 2-like 21
CheY-like HD-domain/PDEase-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
lambda repressor-like DNA-binding domains lambda repressor-like DNA-binding domains 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
Cadherin-like Cadherin-like 11
FliG FliG 11
Nucleotide cyclase TPR-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Prokaryotic type I DNA topoisomerase SWIB/MDM2 domain 11
Macro domain-like Zn-dependent exopeptidases 11
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 11
Ribonuclease H-like DNA/RNA polymerases 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Thioredoxin-like Thioredoxin-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Homeodomain-like NagB/RpiA/CoA transferase-like 11
Nucleotidylyl transferase tRNA-binding arm 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
PurS-like PurM N-terminal domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleotide-diphospho-sugar transferases EspE N-terminal domain-like 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases (Phosphotyrosine protein) phosphatases II 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Thioredoxin-like Nqo1 middle domain-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Ferritin-like HAD-like 11
Globin-like Riboflavin synthase domain-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Radical SAM enzymes RuvA domain 2-like 11
RuvA domain 2-like BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
TGS-like Class II aaRS and biotin synthetases 11
DNA-glycosylase Nudix 11
ACP-like alpha/beta-Hydrolases 11
TPR-like NTF2-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
DAK1/DegV-like DhaL-like 11
Bacterial muramidases Lysozyme-like 11
Nucleic acid-binding proteins GAD domain-like 11
Pectin lyase-like Cadherin-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Nucleotidylyl transferase Nudix 11
Cytochrome P450 Riboflavin synthase domain-like 11
UraD-Like Bacterial exopeptidase dimerisation domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
FKBP-like FKBP-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
cAMP-binding domain-like CBS-domain pair 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Zinc beta-ribbon DNA primase core 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
PTS system IIB component-like PTS system IIB component-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Translation proteins Translation proteins 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Pectin lyase-like Pectin lyase-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
DPP6 N-terminal domain-like Galactose-binding domain-like 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
PheT/TilS domain Putative DNA-binding domain 11
Ankyrin repeat Ankyrin repeat 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Chorismate mutase II ACT-like 11
Ribbon-helix-helix ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
RNase III domain-like dsRNA-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Putative DNA-binding domain CheY-like 11
PreATP-grasp domain PreATP-grasp domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Terpenoid cyclases/Protein prenyltransferases Galactose-binding domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
SMAD/FHA domain SMAD/FHA domain 11
E set domains Cadherin-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
DNA clamp DNA clamp 11
2Fe-2S ferredoxin-like ADC-like 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
PLP-dependent transferases PLP-dependent transferases 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
FabD/lysophospholipase-like ACP-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
alpha/beta-Hydrolases NTF2-like 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Pectin lyase-like Starch-binding domain-like 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
FMN-binding split barrel Riboflavin synthase domain-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
UraD-Like Zn-dependent exopeptidases 11
NTF2-like FAD/NAD(P)-binding domain 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Resolvase-like Homeodomain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Class II aaRS and biotin synthetases Translation proteins 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Terpenoid cyclases/Protein prenyltransferases MurD-like peptide ligases, peptide-binding domain 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Metallo-hydrolase/oxidoreductase SCP-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Single hybrid motif ClpP/crotonase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
ACT-like Formyltransferase 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Cysteine proteinases Invasin/intimin cell-adhesion fragments 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 11
Periplasmic binding protein-like II ACT-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
YajQ-like YajQ-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Hsp33 domain HSP33 redox switch-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
"Winged helix" DNA-binding domain MOP-like 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
FAD-linked oxidoreductase ALDH-like 11
Periplasmic binding protein-like II CheY-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
S-adenosylmethionine decarboxylase S-adenosyl-L-methionine-dependent methyltransferases 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
E set domains alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
EPT/RTPC-like P-loop containing nucleoside triphosphate hydrolases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
(Trans)glycosidases Glycoside hydrolase/deacetylase 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Thiolase-like ACP-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Cupredoxins Cytochrome c 11
MalF N-terminal region-like MetI-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
HAMP domain-like GAF domain-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Nucleotidylyl transferase YegP-like 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
PrpR receptor domain-like Homeodomain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Thioesterase/thiol ester dehydrase-isomerase Acyl-CoA N-acyltransferases (Nat) 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
CBS-domain pair Nucleotide cyclase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Terpenoid cyclases/Protein prenyltransferases Fibronectin type III 11
Lysozyme-like LysM domain 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Cytidine deaminase-like alpha/beta-Hydrolases 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Carbamate kinase-like ACT-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Tex N-terminal region-like Ribonuclease H-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Formyltransferase FMT C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
RmlC-like cupins Rhodanese/Cell cycle control phosphatase 11
CarD-like TRCF domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
PurS-like FGAM synthase PurL, linker domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
L,D-transpeptidase catalytic domain-like NTF2-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleotide-binding domain Nucleotide-binding domain 11
Acyl-CoA N-acyltransferases (Nat) PUA domain-like 11
NHL repeat Invasin/intimin cell-adhesion fragments 11
PurS-like Class I glutamine amidotransferase-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
CheY-like Methylesterase CheB, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Fibronectin type III Galactose-binding domain-like 11
Homeodomain-like Acetamidase/Formamidase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Hypothetical protein PA1324 Invasin/intimin cell-adhesion fragments 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
TPR-like Protein prenylyltransferase 11
RuvA domain 2-like RuvA domain 2-like 11
Molybdenum cofactor-binding domain Cytochrome c 11
TPR-like C-terminal effector domain of the bipartite response regulators 11
TGS-like Class II aaRS ABD-related 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Cyclophilin-like Cyclophilin-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PUA domain-like alpha/beta knot 11
Nucleic acid-binding proteins BRCT domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
TGS-like ThrRS/AlaRS common domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Cytochrome P450 2Fe-2S ferredoxin-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
ADP-ribosylation HAD-like 11
DPP6 N-terminal domain-like Fibronectin type III 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Ferritin-like Metal cation-transporting ATPase, ATP-binding domain N 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
EAL domain-like CBS-domain pair 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Chelatase Thioredoxin-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase PP2C-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Terpenoid cyclases/Protein prenyltransferases MurD-like peptide ligases, catalytic domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
PurS-like PurM C-terminal domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
YjeF N-terminal domain-like Ribokinase-like 11
Pili subunits GspK insert domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Quinoprotein alcohol dehydrogenase-like Cytochrome c 11
Homeodomain-like Probable bacterial effector-binding domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Translation proteins PRC-barrel domain 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Translation proteins "Winged helix" DNA-binding domain 11
Cysteine proteinases Hedgehog/intein (Hint) domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
4Fe-4S ferredoxins ADC-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
YrdC/RibB RibA-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Thiolase-like Heme oxygenase-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Thiolase-like FabD/lysophospholipase-like 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
PreATP-grasp domain ClpP/crotonase 11
PPK N-terminal domain-like PHP14-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
"Winged helix" DNA-binding domain FMN-dependent nitroreductase-like 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Nucleic acid-binding proteins PheT/TilS domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Carbamate kinase-like PUA domain-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
PGBD-like N-acetylmuramoyl-L-alanine amidase-like 11
Subtilisin-like Cadherin-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Putative DNA-binding domain Translation proteins 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PGBD-like Hedgehog/DD-peptidase 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Sensory domain-like CheY-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Invasin/intimin cell-adhesion fragments Hedgehog/intein (Hint) domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
HPr-like Phosphohistidine domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
PIN domain-like DNA/RNA polymerases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Isocitrate/Isopropylmalate dehydrogenase-like FMN-linked oxidoreductases 11
PIN domain-like Ribonuclease H-like 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
FMN-binding split barrel 2Fe-2S ferredoxin-like 11
Periplasmic binding protein-like II vWA-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Lysozyme-like PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Protein kinase-like (PK-like) Nucleotide cyclase 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Terpenoid cyclases/Protein prenyltransferases DPP6 N-terminal domain-like 11
Phoshotransferase/anion transport protein HPr-like 11
Fic-like "Winged helix" DNA-binding domain 11
Single hybrid motif Single hybrid motif 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
C-terminal effector domain of the bipartite response regulators C-terminal effector domain of the bipartite response regulators 11
Fibronectin type III Fibronectin type III 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Methylglyoxal synthase-like Methylglyoxal synthase-like 11
Protein kinase-like (PK-like) TPR-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Ferritin-like Calcium ATPase, transduction domain A 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Ribonuclease H-like RuvA domain 2-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Rudiment single hybrid motif ClpP/crotonase 11
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 11
GIY-YIG endonuclease RuvA domain 2-like 11
Nudix Metallo-hydrolase/oxidoreductase 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Ribbon-helix-helix ACT-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
AhpD-like AhpD-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
MCP/YpsA-like "Winged helix" DNA-binding domain 11
PHP14-like Phospholipase D/nuclease 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
Thioredoxin-like TPR-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
CheC-like Surface presentation of antigens (SPOA) 11

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