SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Bartonella tribocorum CIP 105476

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

420 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 1610
Pectin lyase-like Autotransporter 156
P-loop containing nucleoside triphosphate hydrolases S-adenosyl-L-methionine-dependent methyltransferases 122
Restriction endonuclease-like P-loop containing nucleoside triphosphate hydrolases 113
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 97
Restriction endonuclease-like S-adenosyl-L-methionine-dependent methyltransferases 91
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 73
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 64
Actin-like ATPase domain Actin-like ATPase domain 55
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 51
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 55
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Homeodomain-like Ribonuclease H-like 41
Putative DNA-binding domain mu transposase, C-terminal domain 41
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Ribonuclease H-like mu transposase, C-terminal domain 41
lambda repressor-like DNA-binding domains LexA/Signal peptidase 41
CheY-like C-terminal effector domain of the bipartite response regulators 41
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 43
Homeodomain-like mu transposase, C-terminal domain 41
PLP-binding barrel Alanine racemase C-terminal domain-like 41
Putative DNA-binding domain Ribonuclease H-like 41
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 44
Putative DNA-binding domain Homeodomain-like 41
Homeodomain-like Homeodomain-like 41
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of B transposition protein 41
Thiolase-like Thiolase-like 41
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 31
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Pectin lyase-like Pectin lyase-like 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
PDZ domain-like PDZ domain-like 32
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
HlyD-like secretion proteins HlyD-like secretion proteins 31
L30e-like alpha/beta knot 31
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Translation proteins EF-G C-terminal domain-like 33
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 32
Trypsin-like serine proteases PDZ domain-like 32
Alpha-L RNA-binding motif Pseudouridine synthase 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
PreATP-grasp domain Rudiment single hybrid motif 32
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 22
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
TPR-like TPR-like 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
Zinc beta-ribbon DNA primase core 22
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 22
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
CheY-like Homeodomain-like 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 21
Bacteriophage trimeric proteins domain C-type lectin-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
CheY-like P-loop containing nucleoside triphosphate hydrolases 21
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Single hybrid motif CoA-dependent acyltransferases 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nucleic acid-binding proteins RuvA domain 2-like 22
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
PreATP-grasp domain PreATP-grasp domain 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
CBS-domain pair MgtE membrane domain-like 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Nucleotidyltransferase ACT-like 11
PHP14-like Phospholipase D/nuclease 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleotidyltransferase TGS-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Formyltransferase FMT C-terminal domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Isocitrate/Isopropylmalate dehydrogenase-like Molybdenum cofactor biosynthesis proteins 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
RuvA domain 2-like JAB1/MPN domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Zinc beta-ribbon P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleic acid-binding proteins PheT/TilS domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
PIN domain-like Ribonuclease H-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Trigger factor ribosome-binding domain FKBP-like 11
Thioredoxin-like GST C-terminal domain-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
DNA-glycosylase Nudix 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Nucleotide-diphospho-sugar transferases Six-hairpin glycosidases 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
PHP domain-like AF1531-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Translation proteins ThrRS/AlaRS common domain 11
Phoshotransferase/anion transport protein HPr-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
PLP-dependent transferases PLP-dependent transferases 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
OMPA-like OMPA-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
PheT/TilS domain Putative DNA-binding domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Homodimeric domain of signal transducing histidine kinase CheY-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleic acid-binding proteins GAD domain-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Bacteriophage trimeric proteins domain 11
Zn-binding ribosomal proteins Zn-binding ribosomal proteins 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
Galactose mutarotase-like Galactose mutarotase-like 11
CarD-like TRCF domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
TGS-like Class II aaRS ABD-related 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
HD-domain/PDEase-like TGS-like 11
PDZ domain-like ClpP/crotonase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PUA domain-like alpha/beta knot 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
MFS general substrate transporter Protein kinase-like (PK-like) 11
PIN domain-like DNA/RNA polymerases 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
HPr-like Phosphohistidine domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
TGS-like ACT-like 11
PYP-like sensor domain (PAS domain) EAL domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
RNase III domain-like dsRNA-binding domain-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Nucleotide-diphospho-sugar transferases Galactose mutarotase-like 11
YrdC/RibB RibA-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
HCP-like HCP-like 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Ribonuclease H-like HRDC-like 11
Macro domain-like Zn-dependent exopeptidases 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Translation proteins Translation proteins 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
beta-lactamase/transpeptidase-like Sporulation related repeat 11
Carbamate kinase-like PUA domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Methyl-accepting chemotaxis protein (MCP) signaling domain C-type lectin-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
DNA primase core P-loop containing nucleoside triphosphate hydrolases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases MOP-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Ribbon-helix-helix Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 11
GroEL-intermediate domain like GroEL apical domain-like 11
Lysozyme-like PGBD-like 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
RuvA domain 2-like BRCT domain 11
YlxR-like L30e-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Single hybrid motif TK C-terminal domain-like 11
Hsp33 domain HSP33 redox switch-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
GroES-like NAD(P)-binding Rossmann-fold domains 11
MgtE N-terminal domain-like CBS-domain pair 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Nucleotide cyclase EAL domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Carbamate kinase-like ACT-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Ribonuclease H-like DNA/RNA polymerases 11
Periplasmic binding protein-like II ACT-like 11
Bacterial muramidases Lysozyme-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
TGS-like Class II aaRS and biotin synthetases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
dUTPase-like dUTPase-like 11
Adhesin YadA, collagen-binding domain Pili subunits 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Ribbon-helix-helix CoaB-like 11
HRDC-like HRDC-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Translation proteins Ribosomal protein S5 domain 2-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Nucleic acid-binding proteins BRCT domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
ACT-like ACT-like 11
Class II aaRS and biotin synthetases Translation proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
"Winged helix" DNA-binding domain GAF domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
HD-domain/PDEase-like ACT-like 11
PPK N-terminal domain-like PHP14-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
TGS-like ThrRS/AlaRS common domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Translation proteins PRC-barrel domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
PYP-like sensor domain (PAS domain) Nucleotide cyclase 11
PYP-like sensor domain (PAS domain) CheY-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Fic-like "Winged helix" DNA-binding domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
DNA clamp DNA clamp 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11

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