SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Bacillus megaterium DSM 319

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

722 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4015
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 301
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 275
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2612
CheY-like C-terminal effector domain of the bipartite response regulators 221
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 204
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2011
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 195
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 184
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 182
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 171
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1710
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 172
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 171
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 155
Actin-like ATPase domain Actin-like ATPase domain 154
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 143
GroES-like NAD(P)-binding Rossmann-fold domains 141
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 144
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 132
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 121
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 117
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 101
LysM domain LysM domain 97
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 98
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 91
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 86
Homeodomain-like Homeodomain-like 84
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 86
Phospholipase D/nuclease Phospholipase D/nuclease 83
(Trans)glycosidases Glycosyl hydrolase domain 83
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 84
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 73
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 76
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 71
"Winged helix" DNA-binding domain PLP-dependent transferases 71
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 73
PreATP-grasp domain Rudiment single hybrid motif 73
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
Thiolase-like Thiolase-like 71
HAMP domain-like PYP-like sensor domain (PAS domain) 63
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 65
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 61
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 61
PYP-like sensor domain (PAS domain) Homeodomain-like 64
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 64
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 64
"Winged helix" DNA-binding domain Chorismate lyase-like 61
P-loop containing nucleoside triphosphate hydrolases MOP-like 61
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 63
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 51
Calcium ATPase, transduction domain A HAD-like 54
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 52
HAD-like Calcium ATPase, transmembrane domain M 54
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 52
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 54
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 51
Translation proteins EF-G C-terminal domain-like 54
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
NAD(P)-binding Rossmann-fold domains ACT-like 55
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
CBS-domain pair FAD-binding/transporter-associated domain-like 51
Homeodomain-like SIS domain 51
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
Phoshotransferase/anion transport protein PTS system IIB component-like 55
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 51
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 55
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 41
PYP-like sensor domain (PAS domain) Nucleotide cyclase 44
Barwin-like endoglucanases LysM domain 43
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 41
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 41
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 44
Alpha-L RNA-binding motif Pseudouridine synthase 41
Sensory domain-like PYP-like sensor domain (PAS domain) 42
lambda repressor-like DNA-binding domains RmlC-like cupins 41
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 43
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Sensory domain-like Sporulation response regulatory protein Spo0B 42
Lysozyme-like beta-lactamase/transpeptidase-like 42
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 41
ACT-like ACT-like 42
Enolase N-terminal domain-like Enolase C-terminal domain-like 41
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 43
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 43
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
PGBD-like Cysteine proteinases 43
Homodimeric domain of signal transducing histidine kinase CheY-like 44
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 42
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 43
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 43
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
Single hybrid motif CoA-dependent acyltransferases 41
MFS general substrate transporter MFS general substrate transporter 42
Regulatory protein AraC Homeodomain-like 41
Bacillus cereus metalloprotein-like Bacillus cereus metalloprotein-like 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
Cyclophilin-like PH0987 N-terminal domain-like 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 32
PLP-binding barrel Alanine racemase C-terminal domain-like 32
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 32
Glucose permease domain IIB Duplicated hybrid motif 32
P-loop containing nucleoside triphosphate hydrolases ACT-like 31
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 32
LysM domain (Trans)glycosidases 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 33
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 32
TPR-like TPR-like 33
PDZ domain-like Trypsin-like serine proteases 32
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 32
Carbamate kinase-like ACT-like 31
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
PTS-regulatory domain, PRD PTS system IIB component-like 33
ISP domain Bet v1-like 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
ClpP/crotonase ClpP/crotonase 31
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 32
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Triger factor/SurA peptide-binding domain-like FKBP-like 32
GAF domain-like Homodimeric domain of signal transducing histidine kinase 33
Nucleotide cyclase EAL domain-like 33
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 31
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 33
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
PYP-like sensor domain (PAS domain) CheY-like 33
"Winged helix" DNA-binding domain GAF domain-like 31
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
PGBD-like PGBD-like 33
PYP-like sensor domain (PAS domain) SpoIIaa-like 31
Peptide methionine sulfoxide reductase Mss4-like 21
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
"Winged helix" DNA-binding domain Actin-like ATPase domain 21
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
SacY-like RNA-binding domain PTS-regulatory domain, PRD 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
"Winged helix" DNA-binding domain CBS-domain pair 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
lambda repressor-like DNA-binding domains TPR-like 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 22
Nucleic acid-binding proteins Ribonuclease H-like 22
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 22
Zn-dependent exopeptidases LysM domain 22
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
MalF N-terminal region-like MetI-like 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
CheC-like Surface presentation of antigens (SPOA) 22
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 22
PA domain Subtilisin-like 21
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
Translation proteins Ribosomal protein S5 domain 2-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 22
PreATP-grasp domain PreATP-grasp domain 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
L30e-like alpha/beta knot 21
E set domains (Trans)glycosidases 22
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 22
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 22
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 21
"Winged helix" DNA-binding domain PTS system IIB component-like 22
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Aldolase post-HMGL domain-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 22
PYP-like sensor domain (PAS domain) EAL domain-like 22
lambda repressor-like DNA-binding domains SinR repressor dimerisation domain-like 21
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 21
RmlC-like cupins Homeodomain-like 21
HMA, heavy metal-associated domain HAD-like 22
Putative DNA-binding domain Probable bacterial effector-binding domain 21
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 21
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 21
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 21
Flavoproteins Riboflavin synthase domain-like 22
PreATP-grasp domain Single hybrid motif 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 21
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
alpha-helical ferredoxin Nucleotide-binding domain 21
Serine metabolism enzymes domain ACT-like 22
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 22
LysM domain Cysteine proteinases 22
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 21
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 22
(Trans)glycosidases Galactose mutarotase-like 22
SH3-domain SH3-domain 22
Translation proteins ThrRS/AlaRS common domain 22
Rudiment single hybrid motif Single hybrid motif 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
(Trans)glycosidases Cyclophilin-like 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
(Trans)glycosidases PGBD-like 22
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 21
CheY-like "Winged helix" DNA-binding domain 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
GAF domain-like CheY-like 22
4Fe-4S ferredoxins ARM repeat 11
TGS-like ThrRS/AlaRS common domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
HD-domain/PDEase-like ACT-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
post-HMGL domain-like Single hybrid motif 11
Class II aaRS and biotin synthetases Translation proteins 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like RuvA domain 2-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Translation proteins PRC-barrel domain 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases PTS system fructose IIA component-like 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like I 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Cytochrome P450 Riboflavin synthase domain-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
NTF2-like beta-lactamase/transpeptidase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
DNA primase core N-terminal domain of DnaB helicase 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Galactose-binding domain-like Galactose mutarotase-like 11
Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains PYP-like sensor domain (PAS domain) 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
ACT-like Aminoacid dehydrogenase-like, N-terminal domain 11
Nucleotidyltransferase PHP domain-like 11
PIN domain-like DNA/RNA polymerases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Duplicated hybrid motif LysM domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 11
Nucleotide-diphospho-sugar transferases PLP-dependent transferases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
HAMP domain-like Nucleotide cyclase 11
UROD/MetE-like UROD/MetE-like 11
CheW-like CheY-like 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
PK C-terminal domain-like Phosphohistidine domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
"Winged helix" DNA-binding domain DnaD domain-like 11
PA domain Zn-dependent exopeptidases 11
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
DNA clamp DNA clamp 11
Starch-binding domain-like (Trans)glycosidases 11
NAD(P)-binding Rossmann-fold domains P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Galactose-binding domain-like (Trans)glycosidases 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Subtilisin-like Collagen-binding domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Homodimeric domain of signal transducing histidine kinase Periplasmic binding protein-like I 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
TGS-like Class II aaRS and biotin synthetases 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
AbrB/MazE/MraZ-like AbrB/MazE/MraZ-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
S-adenosylmethionine decarboxylase S-adenosyl-L-methionine-dependent methyltransferases 11
ClpP/crotonase PGBD-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
4Fe-4S ferredoxins ADC-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Rudiment single hybrid motif post-HMGL domain-like 11
PreATP-grasp domain Aldolase 11
GroEL-intermediate domain like GroEL apical domain-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
TGS-like ACT-like 11
LysM domain PR-1-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Tex N-terminal region-like RuvA domain 2-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
GAF domain-like PYP-like sensor domain (PAS domain) 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Metallo-dependent phosphatases Fibronectin type III 11
TGS-like Class II aaRS ABD-related 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
Macro domain-like Zn-dependent exopeptidases 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Glycoside hydrolase/deacetylase UDP-Glycosyltransferase/glycogen phosphorylase 11
PUA domain-like alpha/beta knot 11
Hsp33 domain HSP33 redox switch-like 11
Starch-binding domain-like E set domains 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Carbamate kinase-like PUA domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Periplasmic binding protein-like II ACT-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins BRCT domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Zinc beta-ribbon N-terminal domain of DnaB helicase 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
CheY-like PP2C-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
PDZ domain-like PGBD-like 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
HAMP domain-like GAF domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Sensory domain-like HAMP domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Lysozyme-like N-acetylmuramoyl-L-alanine amidase-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
"Winged helix" DNA-binding domain Putative transcriptional regulator TM1602, C-terminal domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
LysM domain PGBD-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
FliG FliG 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
CBS-domain pair ACT-like 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
PHP domain-like AF1531-like 11
FAD/NAD(P)-binding domain ISP domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Gamma-glutamyl cyclotransferase-like Gamma-glutamyl cyclotransferase-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
SirA-like Rhodanese/Cell cycle control phosphatase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
CheY-like CheY-like 11
PTS-regulatory domain, PRD PTS system fructose IIA component-like 11
CBS-domain pair MgtE membrane domain-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
FAD/NAD(P)-binding domain Folate-binding domain 11
CheY-like Homeodomain-like 11
HisI-like all-alpha NTP pyrophosphatases 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
PDZ domain-like ClpP/crotonase 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Translation proteins Translation proteins 11
"Winged helix" DNA-binding domain PTS system fructose IIA component-like 11
CarD-like TRCF domain-like 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
YojJ-like RuvA domain 2-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
(Trans)glycosidases Class I glutamine amidotransferase-like 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Zn-dependent exopeptidases PGBD-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
RuvA domain 2-like MCP/YpsA-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Hypothetical protein SAV1430 ARM repeat 11
"Winged helix" DNA-binding domain HRDC-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
PheT/TilS domain Putative DNA-binding domain 11
SMAD/FHA domain C-terminal effector domain of the bipartite response regulators 11
PK beta-barrel domain-like Phosphohistidine domain 11
YjeF N-terminal domain-like Ribokinase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
NTF2-like Penicillin binding protein dimerisation domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Nucleotide-diphospho-sugar transferases Phosphoglucomutase, C-terminal domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
MetI-like Periplasmic binding protein-like II 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PPK N-terminal domain-like PHP14-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
SH3-domain Hedgehog/DD-peptidase 11
NAD(P)-binding Rossmann-fold domains Homeodomain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Globin-like Riboflavin synthase domain-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
CheY-binding domain of CheA CheW-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Cysteine proteinases Cysteine proteinases 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
"Winged helix" DNA-binding domain PRTase-like 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
YajQ-like YajQ-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
ACT-like Formyltransferase 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Ribosomal protein L6 Ribosomal protein L6 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Formyltransferase FMT C-terminal domain-like 11
EAL domain-like Sensory domain-like 11
DNA-glycosylase Nudix 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
HprK N-terminal domain-like CBS-domain pair 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Periplasmic binding protein-like I 11
LysM domain L,D-transpeptidase catalytic domain-like 11
Starch-binding domain-like Starch-binding domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
GroEL equatorial domain-like GroEL apical domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
FAD-linked reductases, C-terminal domain Folate-binding domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Trigger factor ribosome-binding domain FKBP-like 11
HAMP domain-like EAL domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
PreATP-grasp domain Cyclophilin-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Nudix "Winged helix" DNA-binding domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Cyclophilin-like Cyclophilin-like 11
CBS-domain pair Homeodomain-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Sortase Fibronectin type III 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Cystatin/monellin Cystatin/monellin 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Rhodanese/Cell cycle control phosphatase Metallo-hydrolase/oxidoreductase 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Inosine monophosphate dehydrogenase (IMPDH) Inosine monophosphate dehydrogenase (IMPDH) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Nucleic acid-binding proteins HD-domain/PDEase-like 11
RuvA domain 2-like RuvA domain 2-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Metallo-hydrolase/oxidoreductase SCP-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
PreATP-grasp domain post-HMGL domain-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Cupredoxins Cytochrome c 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Actin-like ATPase domain HD-domain/PDEase-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Nucleotidyltransferase TGS-like 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Zinc beta-ribbon DNA primase core 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
vWA-like vWA-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
"Winged helix" DNA-binding domain HprK N-terminal domain-like 11
CheY-like Nucleotide cyclase 11
Rhomboid-like TPR-like 11
Class II aaRS and biotin synthetases SufE/NifU 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
HAMP domain-like CheY-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Rudiment single hybrid motif Aldolase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
CheY-like Methylesterase CheB, C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Trimeric LpxA-like enzymes Phosphoglucomutase, C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
TPR-like Hypothetical protein MPN330 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
YrdC/RibB RibA-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases GAD domain-like 11
PUA domain-like Nucleotidylyl transferase 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
PH0987 N-terminal domain-like Single hybrid motif 11
PYP-like sensor domain (PAS domain) Periplasmic binding protein-like I 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Hedgehog/DD-peptidase PGBD-like 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
PHP14-like Phospholipase D/nuclease 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Arabinanase/levansucrase/invertase Arabinanase/levansucrase/invertase 11
HD-domain/PDEase-like TGS-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
2Fe-2S ferredoxin-like ADC-like 11
Aldolase Single hybrid motif 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
KaiA/RbsU domain PP2C-like 11
Tropomyosin Duplicated hybrid motif 11
Homeodomain-like Probable bacterial effector-binding domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Cytochrome P450 Flavoproteins 11
L,D-transpeptidase catalytic domain-like PGBD-like 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Nucleotidyltransferase ACT-like 11
RuvA domain 2-like BRCT domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
Tetrapyrrole methylase Nitrite and sulphite reductase 4Fe-4S domain-like 11
DNA repair protein MutS, domain III SMR domain-like 11
GAF domain-like Homeodomain-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PIN domain-like Ribonuclease H-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
RuvA domain 2-like JAB1/MPN domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Rudiment single hybrid motif Cyclophilin-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Ribonuclease H-like DNA/RNA polymerases 11
P-loop containing nucleoside triphosphate hydrolases PTS-regulatory domain, PRD 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Nucleotidylyl transferase tRNA-binding arm 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
Metallo-dependent phosphatases Metallo-dependent phosphatases 11
CheY-like Periplasmic binding protein-like I 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Cyclophilin-like Single hybrid motif 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11

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