SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Vibrio harveyi ATCC BAA-1116

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

782 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 582
Homeodomain-like Ribonuclease H-like 452
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3719
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2913
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 223
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1813
CheY-like C-terminal effector domain of the bipartite response regulators 182
Homodimeric domain of signal transducing histidine kinase CheY-like 1712
Actin-like ATPase domain Actin-like ATPase domain 164
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 156
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 146
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 146
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 132
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 131
Nucleotide cyclase EAL domain-like 127
Homeodomain-like Homeodomain-like 114
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 111
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 113
PYP-like sensor domain (PAS domain) Nucleotide cyclase 109
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 107
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 101
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 95
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 95
CheY-like P-loop containing nucleoside triphosphate hydrolases 92
Thioredoxin-like GST C-terminal domain-like 91
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 96
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 94
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 95
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 95
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 95
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 95
P-loop containing nucleoside triphosphate hydrolases Translation proteins 96
CheY-like Homeodomain-like 92
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 84
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 85
P-loop containing nucleoside triphosphate hydrolases MOP-like 72
TPR-like TPR-like 73
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 75
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 73
Thiolase-like Thiolase-like 71
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 71
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 76
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 73
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 63
MetI-like MetI-like 63
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 65
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
GroES-like NAD(P)-binding Rossmann-fold domains 62
(Trans)glycosidases Glycosyl hydrolase domain 64
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 64
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 63
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
ACT-like ACT-like 65
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 53
Alpha-L RNA-binding motif Pseudouridine synthase 52
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 53
Translation proteins EF-G C-terminal domain-like 53
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 51
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 55
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 55
E set domains (Trans)glycosidases 55
CheY-like Histidine-containing phosphotransfer domain, HPT domain 55
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 55
Carbohydrate binding domain (Trans)glycosidases 54
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54
PYP-like sensor domain (PAS domain) EAL domain-like 55
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
PYP-like sensor domain (PAS domain) CheY-like 54
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 52
Cytochrome c Cytochrome c 53
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 53
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 42
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
CheW-like CheY-like 42
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 42
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 43
Regulatory protein AraC Homeodomain-like 41
CoA-dependent acyltransferases CoA-dependent acyltransferases 44
beta-Roll beta-Roll 44
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 43
Sensory domain-like Nucleotide cyclase 44
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
PreATP-grasp domain Rudiment single hybrid motif 41
Nucleic acid-binding proteins Nucleic acid-binding proteins 43
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 43
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 43
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Enolase N-terminal domain-like Enolase C-terminal domain-like 41
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Translation proteins SH3-like domain Nucleic acid-binding proteins 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
OMPA-like OmpA-like 31
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 32
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 31
NTF2-like NTF2-like 31
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 31
Nucleotidyltransferase ACT-like 32
Single hybrid motif CoA-dependent acyltransferases 32
(Trans)glycosidases Chitinase insertion domain 33
Homeodomain-like Probable bacterial effector-binding domain 31
E set domains Glycosyl hydrolase domain 33
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
TPR-like Nucleotide cyclase 32
CheY-like CheY-like 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 33
HMA, heavy metal-associated domain HAD-like 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
"Winged helix" DNA-binding domain PLP-dependent transferases 31
PTS system IIB component-like Phoshotransferase/anion transport protein 33
HlyD-like secretion proteins HlyD-like secretion proteins 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
HAD-like Calcium ATPase, transmembrane domain M 33
CoA-dependent acyltransferases ACP-like 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
Sensory domain-like PYP-like sensor domain (PAS domain) 33
Periplasmic binding protein-like II Lysozyme-like 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
cAMP-binding domain-like CBS-domain pair 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 31
RuvA domain 2-like Nucleic acid-binding proteins 33
HD-domain/PDEase-like ACT-like 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
HD-domain/PDEase-like Nucleotidyltransferase 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Carbohydrate binding domain Carbohydrate binding domain 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
FKBP-like Triger factor/SurA peptide-binding domain-like 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 32
2Fe-2S ferredoxin-like alpha-helical ferredoxin 32
gp5 N-terminal domain-like Phage fibre proteins 33
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 33
Sensory domain-like Sensory domain-like 33
Phospholipase D/nuclease Phospholipase D/nuclease 33
Carbamate kinase-like ACT-like 33
alpha-helical ferredoxin Nucleotide-binding domain 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Calcium ATPase, transduction domain A HAD-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
Subtilisin-like Galactose-binding domain-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
Phage tail proteins Phage tail proteins 22
MgtE N-terminal domain-like MgtE membrane domain-like 21
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
Phoshotransferase/anion transport protein HPr-like 22
LysM domain LysM domain 22
Protease propeptides/inhibitors Subtilisin-like 22
C-type lectin-like Aerolisin/ETX pore-forming domain 21
ClpP/crotonase ClpP/crotonase 22
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
E set domains Carbohydrate binding domain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
MgtE N-terminal domain-like CBS-domain pair 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
"Winged helix" DNA-binding domain Actin-like ATPase domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 21
GAF domain-like Nucleotide cyclase 22
PilZ domain-like PilZ domain-like 21
Trypsin-like serine proteases PDZ domain-like 22
Homeodomain-like SIS domain 21
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
CheY-like Nucleotide cyclase 22
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 21
Periplasmic binding protein-like II HD-domain/PDEase-like 22
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
HAMP domain-like Nucleotide cyclase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
"Winged helix" DNA-binding domain Chorismate lyase-like 21
CheY-like TPR-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 21
PK beta-barrel domain-like PK C-terminal domain-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
Nucleotidylyl transferase Alpha-L RNA-binding motif 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
CBS-domain pair MgtE membrane domain-like 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
ACT-like NAD(P)-binding Rossmann-fold domains 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Periplasmic binding protein-like II Nucleotide cyclase 22
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 22
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 21
TGS-like ACT-like 21
RmlC-like cupins Homeodomain-like 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 21
Acetyl-CoA synthetase-like ACP-like 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Isochorismatase-like hydrolases ACP-like 21
PDZ domain-like ClpP/crotonase 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
FliG FliG 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
HAMP domain-like CheY-like 22
TPR-like C-terminal effector domain of the bipartite response regulators 22
HD-domain/PDEase-like TGS-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Phage tail proteins Phage fibre proteins 22
GroES-like GroES-like 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
L30e-like alpha/beta knot 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
PDZ domain-like PDZ domain-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Nucleotidyltransferase TGS-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
LeuD/IlvD-like Aconitase iron-sulfur domain 22
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 21
Carbohydrate binding domain Chitinase insertion domain 22
ACT-like P-loop containing nucleoside triphosphate hydrolases 22
DNA methylase specificity domain DNA methylase specificity domain 21
Zinc beta-ribbon Zinc beta-ribbon 22
DPP6 N-terminal domain-like alpha/beta-Hydrolases 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Phage tail proteins gp5 N-terminal domain-like 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Ribonuclease H-like DNA/RNA polymerases 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Actin-like ATPase domain HD-domain/PDEase-like 21
CheY-like CheC-like 21
GAF domain-like Homeodomain-like 21
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 22
PLP-dependent transferases PLP-dependent transferases 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Ribokinase-like Nucleotidylyl transferase 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Cloacin translocation domain His-Me finger endonucleases 11
CalX-like CalX-like 11
Class I glutamine amidotransferase-like Homeodomain-like 11
LysM domain L,D-transpeptidase catalytic domain-like 11
HAD-like Ribosomal protein S5 domain 2-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Aldolase AFP III-like domain 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
CheC-like Surface presentation of antigens (SPOA) 11
Sensory domain-like Sporulation response regulatory protein Spo0B 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
Translation proteins PRC-barrel domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
TGS-like Class II aaRS and biotin synthetases 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
ACT-like PYP-like sensor domain (PAS domain) 11
Nudix Acid phosphatase/Vanadium-dependent haloperoxidase 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Hsp33 domain HSP33 redox switch-like 11
HCP-like HCP-like 11
2Fe-2S ferredoxin-like ADC-like 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Translation proteins Translation proteins 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Nucleotide-binding domain Formate dehydrogenase/DMSO reductase, domains 1-3 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotidyltransferase Nucleotidyltransferase 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Bacterial muramidases Lysozyme-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Protease propeptides/inhibitors Collagen-binding domain 11
LysM domain His-Me finger endonucleases 11
GAF domain-like Phosphohistidine domain 11
UROD/MetE-like UROD/MetE-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
HisI-like all-alpha NTP pyrophosphatases 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
Globin-like Riboflavin synthase domain-like 11
Outer arm dynein light chain 1 Protein kinase-like (PK-like) 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Flavoproteins Riboflavin synthase domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
CheY-like "Winged helix" DNA-binding domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
post-HMGL domain-like Single hybrid motif 11
PIN domain-like DNA/RNA polymerases 11
Nucleotidyltransferase all-alpha NTP pyrophosphatases 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
GAF domain-like GAF domain-like 11
Metalloproteases ("zincins"), catalytic domain Carbohydrate binding domain 11
PurS-like PurM C-terminal domain-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Bacterial hemolysins Acid proteases 11
Phosphotyrosine protein phosphatases I "Winged helix" DNA-binding domain 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Aldolase Single hybrid motif 11
Class II aaRS and biotin synthetases Translation proteins 11
Lysozyme-like L,D-transpeptidase catalytic domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
CheY-like cAMP-binding domain-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Acyl-CoA N-acyltransferases (Nat) Thioesterase/thiol ester dehydrase-isomerase 11
L-aspartase-like Acyl-CoA N-acyltransferases (Nat) 11
Lysozyme-like Carbohydrate binding domain 11
Peptide methionine sulfoxide reductase Mss4-like 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
CarD-like TRCF domain-like 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
CheY-like Ornithine decarboxylase C-terminal domain 11
Single hybrid motif Single hybrid motif 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
OMPA-like LysM domain 11
TGS-like Class II aaRS ABD-related 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
PPK N-terminal domain-like PHP14-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
PIN domain-like Ribonuclease H-like 11
Cytidine deaminase-like Cytidine deaminase-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Quinoprotein alcohol dehydrogenase-like MetI-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
RuvA domain 2-like BRCT domain 11
GspK insert domain-like GspK insert domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Pseudouridine synthase PUA domain-like 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Formyltransferase FMT C-terminal domain-like 11
PKD domain Carbohydrate binding domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
PHP14-like Phospholipase D/nuclease 11
Ribonuclease H-like RuvA domain 2-like 11
ALDH-like Dehydroquinate synthase-like 11
Surface presentation of antigens (SPOA) Surface presentation of antigens (SPOA) 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Protease propeptides/inhibitors Galactose-binding domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Calcium-dependent phosphotriesterase Homeodomain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
MOSC N-terminal domain-like Riboflavin synthase domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
DNA-glycosylase Nudix 11
CheY-like Methylesterase CheB, C-terminal domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PK beta-barrel domain-like Riboflavin synthase domain-like 11
PRTase-like Nucleotide cyclase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Periplasmic binding protein-like II ACT-like 11
Translation proteins ThrRS/AlaRS common domain 11
CalX-like vWA-like 11
cAMP-binding domain-like Homodimeric domain of signal transducing histidine kinase 11
TSP type-3 repeat OmpA-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
CheY-like EAL domain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
DeoB insert domain-like Alkaline phosphatase-like 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
YajQ-like YajQ-like 11
Galactose-binding domain-like His-Me finger endonucleases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
lambda repressor-like DNA-binding domains "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Thioredoxin-like TPR-like 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
E set domains PKD domain 11
MalF N-terminal region-like MetI-like 11
RuvA domain 2-like RuvA domain 2-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Metalloproteases ("zincins"), catalytic domain PKD domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Carbamate kinase-like PUA domain-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
CheY-like PLP-dependent transferases 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Resolvase-like Homeodomain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
FKBP-like FKBP-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
ACP-like alpha/beta-Hydrolases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
H-NS histone-like proteins H-NS histone-like proteins 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
PapD-like Periplasmic chaperone C-domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Tex N-terminal region-like RuvA domain 2-like 11
GAF domain-like EAL domain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Zn-dependent exopeptidases LysM domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
MOSC N-terminal domain-like 2Fe-2S ferredoxin-like 11
Sensory domain-like CheY-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
ACT-like Formyltransferase 11
TerB-like Chaperone J-domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Nucleic acid-binding proteins PheT/TilS domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Prismane protein-like 2Fe-2S ferredoxin-like 11
FMN-linked oxidoreductases Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
GroEL equatorial domain-like GroEL equatorial domain-like 11
Cupredoxins Cupredoxins 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) CBS-domain pair 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
HIT-like HIT-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Acid proteases Acid proteases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Chorismate mutase II ACT-like 11
Galactose-binding domain-like (Trans)glycosidases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Starch-binding domain-like (Trans)glycosidases 11
alpha-helical ferredoxin ADC-like 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Macro domain-like Zn-dependent exopeptidases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
DNA clamp DNA clamp 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Periplasmic binding protein-like II GlnB-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
YrdC/RibB RibA-like 11
4Fe-4S ferredoxins ADC-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
HRDC-like HRDC-like 11
Aldolase post-HMGL domain-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Galactose-binding domain-like Nucleotide cyclase 11
FAD-linked oxidoreductase ALDH-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains FAD/NAD(P)-binding domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Subtilisin-like Collagen-binding domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
MOSC N-terminal domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
TSP type-3 repeat beta-Roll 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PTS system IIB component-like PTS system IIB component-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Glycoside hydrolase/deacetylase Carbohydrate binding domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
NTF2-like Sec-C motif 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Barwin-like endoglucanases Sporulation related repeat 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Carbohydrate-binding domain (Trans)glycosidases 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
PurS-like FGAM synthase PurL, linker domain 11
EAL domain-like CBS-domain pair 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
vWA-like TPR-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Methionine synthase domain Methionine synthase activation domain-like 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Cupredoxins Cytochrome c 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Lysozyme-like LysM domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Carbohydrate-binding domain E set domains 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Putative DNA-binding domain Translation proteins 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
ClpP/crotonase NfeD domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
PUA domain-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Nucleotide-binding domain ADC-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Starch-binding domain-like E set domains 11
Dihydropteroate synthetase-like Methionine synthase domain 11
PK beta-barrel domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
E set domains E set domains 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
PRTase-like PYP-like sensor domain (PAS domain) 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Zinc beta-ribbon DNA primase core 11
GroEL equatorial domain-like GroEL apical domain-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Chitinase insertion domain PKD domain 11
Nucleic acid-binding proteins BRCT domain 11
PurS-like Class I glutamine amidotransferase-like 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
alpha-helical ferredoxin Formate dehydrogenase/DMSO reductase, domains 1-3 11
GAF domain-like HD-domain/PDEase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Tex N-terminal region-like Ribonuclease H-like 11
beta-N-acetylhexosaminidase-like domain E set domains 11
OmpA-like OmpA-like 11
ACT-like Homeodomain-like 11
HAMP domain-like EAL domain-like 11
cAMP-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
2Fe-2S ferredoxin-like Nucleotide-binding domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
LysM domain Cloacin translocation domain 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Bet v1-like Probable bacterial effector-binding domain 11
Metalloproteases ("zincins"), catalytic domain Galactose-binding domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PreATP-grasp domain PreATP-grasp domain 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
PurS-like PurM N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Ribonuclease H-like HRDC-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
HCP-like Chaperone J-domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
MesJ substrate recognition domain-like PheT/TilS domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
E set domains Chitinase insertion domain 11
PheT/TilS domain Putative DNA-binding domain 11
PHP domain-like Nucleic acid-binding proteins 11
Starch-binding domain-like Glycosyl hydrolase domain 11
"Winged helix" DNA-binding domain GAF domain-like 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
Thioredoxin-like Thioredoxin-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
PRTase-like EAL domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
E set domains Six-hairpin glycosidases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
RuvA domain 2-like JAB1/MPN domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
TGS-like ThrRS/AlaRS common domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
(Trans)glycosidases PKD domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
EAL domain-like HD-domain/PDEase-like 11
Pili subunits GspK insert domain-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II CheY-like 11
"Winged helix" DNA-binding domain MukF C-terminal domain-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11

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