SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Candidatus Carsonella ruddii PV

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

55 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases Translation proteins 33
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 22
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleic acid-binding proteins Translation proteins SH3-like domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
GroEL-intermediate domain like GroEL apical domain-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
PLP-binding barrel Alanine racemase C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Zinc beta-ribbon DNA primase core 11
Initiation factor IF2/eIF5b, domain 3 Translation proteins 11
PreATP-grasp domain PreATP-grasp domain 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
EF-G C-terminal domain-like EF-G C-terminal domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 11
UROD/MetE-like UROD/MetE-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Actin-like ATPase domain Actin-like ATPase domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 11
FAD-linked oxidoreductase ALDH-like 11
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Translation proteins EF-G C-terminal domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
ACT-like ACT-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 11
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Carbamate kinase-like ACT-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11

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