SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Candidatus Vesicomyosocius okutanii HA

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

383 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 97
Actin-like ATPase domain Actin-like ATPase domain 63
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 63
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 43
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 41
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Cytochrome c Cytochrome c 32
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 31
ACT-like ACT-like 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
PreATP-grasp domain Rudiment single hybrid motif 31
Translation proteins EF-G C-terminal domain-like 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
PLP-binding barrel Alanine racemase C-terminal domain-like 21
Thiolase-like Thiolase-like 21
Nucleic acid-binding proteins RuvA domain 2-like 22
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Thioredoxin-like GST C-terminal domain-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
HD-domain/PDEase-like ACT-like 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
4Fe-4S ferredoxins Nitrite and sulphite reductase 4Fe-4S domain-like 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 22
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Nitrite/Sulfite reductase N-terminal domain-like 4Fe-4S ferredoxins 21
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 22
Alpha-L RNA-binding motif Pseudouridine synthase 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleotidyltransferase ACT-like 22
alpha-helical ferredoxin Nucleotide-binding domain 22
Nucleotidyltransferase HD-domain/PDEase-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
Nucleotidylyl transferase tRNA-binding arm 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
PreATP-grasp domain PreATP-grasp domain 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Methionine synthase domain Methionine synthase activation domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Trigger factor ribosome-binding domain FKBP-like 11
Single hybrid motif Single hybrid motif 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
RuvA domain 2-like BRCT domain 11
TGS-like Class II aaRS ABD-related 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
PurS-like PurM C-terminal domain-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
TGS-like ACT-like 11
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Carbamate kinase-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
PurS-like Class I glutamine amidotransferase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
SIS domain CBS-domain pair 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
TGS-like Class II aaRS and biotin synthetases 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Periplasmic binding protein-like II ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PP2C-like Protein kinase-like (PK-like) 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
Nucleic acid-binding proteins BRCT domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
HCP-like HCP-like 11
PDZ domain-like ClpP/crotonase 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Cupredoxins Cupredoxins 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Single hybrid motif CoA-dependent acyltransferases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
CarD-like TRCF domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Chorismate mutase II ACT-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Translation proteins Translation proteins 11
Aldolase Single hybrid motif 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
PUA domain-like alpha/beta knot 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
DNA clamp DNA clamp 11
PurS-like FGAM synthase PurL, linker domain 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
L30e-like alpha/beta knot 11
Ribonuclease H-like DNA/RNA polymerases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Zinc beta-ribbon DNA primase core 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Cupredoxins Cytochrome c 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
PIN domain-like DNA/RNA polymerases 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Chorismate mutase II Periplasmic binding protein-like II 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
GroEL-intermediate domain like GroEL apical domain-like 11
Translation proteins ThrRS/AlaRS common domain 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
CheY-like C-terminal effector domain of the bipartite response regulators 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
PIN domain-like Ribonuclease H-like 11
Ribosomal protein L6 Ribosomal protein L6 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Translation proteins PRC-barrel domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
MetI-like MetI-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
TGS-like ThrRS/AlaRS common domain 11
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
PUA domain-like Nucleotidylyl transferase 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Formyltransferase FMT C-terminal domain-like 11
HMA, heavy metal-associated domain HAD-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
MgtE N-terminal domain-like CBS-domain pair 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
YrdC/RibB RibA-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Aldolase post-HMGL domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
HAD-like Calcium ATPase, transmembrane domain M 11
PreATP-grasp domain Methylglyoxal synthase-like 11
RNase III domain-like dsRNA-binding domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Nucleotidyltransferase TGS-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
CheY-like Homeodomain-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
PurS-like PurM N-terminal domain-like 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
CBS-domain pair MgtE membrane domain-like 11
PDZ domain-like PDZ domain-like 11
HD-domain/PDEase-like TGS-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Calcium ATPase, transduction domain A HAD-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
post-HMGL domain-like Single hybrid motif 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11

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