SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Geobacter daltonii FRC-32

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

789 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 8137
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4321
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 4119
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 368
CheY-like P-loop containing nucleoside triphosphate hydrolases 252
CheY-like Homeodomain-like 241
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2312
Multiheme cytochromes Multiheme cytochromes 2317
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 199
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 188
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1813
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1713
Homodimeric domain of signal transducing histidine kinase CheY-like 1611
CheY-like PYP-like sensor domain (PAS domain) 1611
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 137
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 122
Actin-like ATPase domain Actin-like ATPase domain 123
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 116
P-loop containing nucleoside triphosphate hydrolases Translation proteins 118
TPR-like TPR-like 118
HAMP domain-like PYP-like sensor domain (PAS domain) 118
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 114
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 105
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 108
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1010
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 96
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 96
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 94
Thiolase-like Thiolase-like 93
GAF domain-like Homodimeric domain of signal transducing histidine kinase 99
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 92
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 96
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 96
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 93
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 96
GroES-like NAD(P)-binding Rossmann-fold domains 81
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 85
PYP-like sensor domain (PAS domain) Nucleotide cyclase 88
GAF domain-like PYP-like sensor domain (PAS domain) 87
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 82
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 76
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 75
CheY-like GAF domain-like 77
Histidine-containing phosphotransfer domain, HPT domain CheW-like 74
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 74
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 74
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 71
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 76
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 75
Homodimeric domain of signal transducing histidine kinase CheW-like 63
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 64
CheY-like C-terminal effector domain of the bipartite response regulators 61
CheY-like Methylesterase CheB, C-terminal domain 61
ACT-like ACT-like 63
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 63
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 62
PurM N-terminal domain-like PurM C-terminal domain-like 62
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 62
Triger factor/SurA peptide-binding domain-like FKBP-like 64
CheY-like Nucleotide cyclase 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
PYP-like sensor domain (PAS domain) Homeodomain-like 64
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 62
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
"Winged helix" DNA-binding domain GAF domain-like 61
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 64
Nucleotide cyclase EAL domain-like 55
EF-G C-terminal domain-like EF-G C-terminal domain-like 53
PLP-binding barrel Alanine racemase C-terminal domain-like 52
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 53
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 54
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 52
PYP-like sensor domain (PAS domain) EAL domain-like 55
Translation proteins EF-G C-terminal domain-like 53
GAF domain-like GAF domain-like 55
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 54
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
Homeodomain-like Homeodomain-like 44
PreATP-grasp domain Rudiment single hybrid motif 43
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 42
PUA domain-like Ribosomal protein S5 domain 2-like 43
CheY-like HD-domain/PDEase-like 41
HAD-like Calcium ATPase, transmembrane domain M 43
GAF domain-like Nucleotide cyclase 44
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 41
GAF domain-like HD-domain/PDEase-like 44
Pectin lyase-like Pectin lyase-like 44
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 43
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 41
Nucleotidyltransferase Poly A polymerase C-terminal region-like 43
Nqo1 middle domain-like Nqo1C-terminal domain-like 42
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 43
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 41
Calcium ATPase, transduction domain A HAD-like 43
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 42
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 42
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 44
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 43
Transposase IS200-like TrpR-like 41
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 42
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 42
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 43
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 42
Formate dehydrogenase/DMSO reductase, domains 1-3 4Fe-4S ferredoxins 43
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 43
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 44
Sensory domain-like HAMP domain-like 44
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 43
4Fe-4S ferredoxins Radical SAM enzymes 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 33
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 32
Nqo1 FMN-binding domain-like 4Fe-4S ferredoxins 31
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 33
Cytochrome c Multiheme cytochromes 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 31
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
RuvA domain 2-like Nucleic acid-binding proteins 33
Thioredoxin-like Nqo1 FMN-binding domain-like 31
Translation proteins Ribosomal protein S5 domain 2-like 31
Cupredoxins Cupredoxins 33
HAMP domain-like CheY-like 32
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 32
Thioredoxin-like 4Fe-4S ferredoxins 31
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 31
Cytochrome c Cytochrome c 33
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 32
ADC-like 4Fe-4S ferredoxins 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 31
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
Sensory domain-like PYP-like sensor domain (PAS domain) 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
Thioredoxin-like Nqo1C-terminal domain-like 31
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
Nqo1C-terminal domain-like 4Fe-4S ferredoxins 31
PDZ domain-like PDZ domain-like 32
Trypsin-like serine proteases PDZ domain-like 32
lambda repressor-like DNA-binding domains RmlC-like cupins 31
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 32
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Thioredoxin-like Nqo1 middle domain-like 31
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 32
EspE N-terminal domain-like CheY-like 33
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
Translation proteins SH3-like domain Nucleic acid-binding proteins 32
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 32
Nucleotide-binding domain 4Fe-4S ferredoxins 32
Nqo1 middle domain-like 4Fe-4S ferredoxins 31
HAMP domain-like HD-domain/PDEase-like 33
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 32
Phospholipase D/nuclease Phospholipase D/nuclease 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 31
Alpha-L RNA-binding motif Pseudouridine synthase 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 33
Fibronectin type III Fibronectin type III 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
CheY-like CheY-like 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 21
4Fe-4S ferredoxins DHS-like NAD/FAD-binding domain 21
CheY-like TPR-like 22
Single hybrid motif CoA-dependent acyltransferases 21
HAMP domain-like GAF domain-like 22
(Trans)glycosidases Glycosyl hydrolase domain 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 22
2Fe-2S ferredoxin-like ADC-like 21
Terpenoid cyclases/Protein prenyltransferases Carboxypeptidase regulatory domain-like 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
CheY-like EAL domain-like 22
FAD/NAD(P)-binding domain Nucleotide-binding domain 21
PYP-like sensor domain (PAS domain) PP2C-like 22
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
GAF domain-like PP2C-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Starch-binding domain-like Carboxypeptidase regulatory domain-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 21
Sensory domain-like Nucleotide cyclase 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 21
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
Ferritin-like Rubredoxin-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
PDZ domain-like ClpP/crotonase 21
Nucleotidyltransferase ACT-like 22
4Fe-4S ferredoxins Adenine nucleotide alpha hydrolases-like 21
Lysozyme-like beta-lactamase/transpeptidase-like 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 22
GAF domain-like Homeodomain-like 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
LysM domain LysM domain 22
Terpenoid cyclases/Protein prenyltransferases Starch-binding domain-like 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Rudiment single hybrid motif Single hybrid motif 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
CheW-like CheY-like 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
ClpP/crotonase ClpP/crotonase 21
alpha-helical ferredoxin Nucleotide-binding domain 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Sensory domain-like EAL domain-like 22
Starch-binding domain-like Starch-binding domain-like 22
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 21
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 22
Nqo5-like HydB/Nqo4-like 22
PreATP-grasp domain Single hybrid motif 22
Aldolase post-HMGL domain-like 22
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 21
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
Fibronectin type III NHL repeat 22
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 22
OMPA-like OmpA-like 22
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Aldolase Single hybrid motif 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
HAMP domain-like Nucleotide cyclase 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 22
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
NagB/RpiA/CoA transferase-like Acyl-CoA N-acyltransferases (Nat) 21
EspE N-terminal domain-like GAF domain-like 22
PIN domain-like Ribonuclease H-like 22
Formyltransferase FMT C-terminal domain-like 21
FMN-binding split barrel UbiD C-terminal domain-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
TK C-terminal domain-like 4Fe-4S ferredoxins 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
E set domains (Trans)glycosidases 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Carboxypeptidase regulatory domain-like Carboxypeptidase regulatory domain-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
post-HMGL domain-like Single hybrid motif 22
Calcium-dependent phosphotriesterase Fibronectin type III 22
Thiolase-like FabD/lysophospholipase-like 22
Multiheme cytochromes PKD domain 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
DHH phosphoesterases CBS-domain pair 22
Cadherin-like Cadherin-like 22
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
4Fe-4S ferredoxins Nitrite and sulphite reductase 4Fe-4S domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
4Fe-4S ferredoxins HydA/Nqo6-like 11
UDP-Glycosyltransferase/glycogen phosphorylase S-adenosyl-L-methionine-dependent methyltransferases 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
GAF domain-like EAL domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Periplasmic binding protein-like II ACT-like 11
E set domains Invasin/intimin cell-adhesion fragments 11
Ribonuclease H-like DNA/RNA polymerases 11
LysM domain L,D-transpeptidase catalytic domain-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Multidrug efflux transporter AcrB transmembrane domain Outer membrane efflux proteins (OEP) 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Pectin lyase-like Fibronectin type III 11
Fibronectin type III Invasin/intimin cell-adhesion fragments 11
E set domains Fibronectin type III 11
TSP type-3 repeat OmpA-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Rudiment single hybrid motif post-HMGL domain-like 11
Nucleotide-diphospho-sugar transferases TPR-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
Kelch motif Galactose oxidase, central domain 11
beta-Roll beta-Roll 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
PKD domain YVTN repeat-like/Quinoprotein amine dehydrogenase 11
4Fe-4S ferredoxins Homeodomain-like 11
Thiolase-like ACP-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
CheY-like Chaperone J-domain 11
Integrin alpha N-terminal domain Fibronectin type III 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
ARM repeat ARM repeat 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
NAD(P)-linked oxidoreductase 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Tetrapyrrole methylase HemD-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Chaperone J-domain TPR-like 11
Ribonuclease H-like RuvA domain 2-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
E set domains Glycosyl hydrolase domain 11
PDZ domain-like Radical SAM enzymes 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
GspK insert domain-like RuvA domain 2-like 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
CheY-like PilZ domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Acyl-CoA N-acyltransferases (Nat) Isochorismatase-like hydrolases 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
PreATP-grasp domain PreATP-grasp domain 11
PreATP-grasp domain post-HMGL domain-like 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
Chaperone J-domain EspE N-terminal domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Cupredoxins Type I dockerin domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Nucleic acid-binding proteins GAD domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
FabD/lysophospholipase-like ACP-like 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
YajQ-like YajQ-like 11
YWTD domain Invasin/intimin cell-adhesion fragments 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Kelch motif Invasin/intimin cell-adhesion fragments 11
Nqo1C-terminal domain-like Nucleotide-binding domain 11
Carbamate kinase-like PUA domain-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Cupredoxins Fibronectin type III 11
ACP-like ACP-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
GroEL-intermediate domain like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Outer membrane efflux proteins (OEP) 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
CheY-like PP2C-like 11
Cadherin-like Fucose-specific lectin 11
TGS-like Class II aaRS and biotin synthetases 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
TGS-like Class II aaRS ABD-related 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Rudiment single hybrid motif Aldolase 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
Phage tail proteins gp5 N-terminal domain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Pili subunits Pili subunits 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Translation proteins "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Terpenoid cyclases/Protein prenyltransferases Integrin alpha N-terminal domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PilZ domain-like Homeodomain-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
CBS-domain pair Poly A polymerase C-terminal region-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
TGS-like ThrRS/AlaRS common domain 11
Riboflavin kinase-like HAD-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
SirA-like DsrEFH-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Calcium-dependent phosphotriesterase NHL repeat 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Galactose oxidase, central domain YWTD domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Iron-dependent repressor protein, dimerization domain C-terminal domain of transcriptional repressors 11
Thioredoxin-like Six-hairpin glycosidases 11
Regulatory protein AraC Homeodomain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
CheC-like CheY-like 11
Galactose-binding domain-like Galactose-binding domain-like 11
DNA clamp DNA clamp 11
Putative DNA-binding domain Phoshotransferase/anion transport protein 11
EspE N-terminal domain-like CheW-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
TGS-like ACT-like 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
DNA repair protein MutS, domain III SMR domain-like 11
(Trans)glycosidases NAD(P)-binding Rossmann-fold domains 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Nitrite/Sulfite reductase N-terminal domain-like 4Fe-4S ferredoxins 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
Nqo1C-terminal domain-like alpha-helical ferredoxin 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Kelch motif YWTD domain 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
FliG FliG 11
Fibronectin type III Type I dockerin domain 11
MgtE N-terminal domain-like CBS-domain pair 11
Cysteine proteinases Invasin/intimin cell-adhesion fragments 11
E set domains E set domains 11
EspE N-terminal domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Calcium-dependent phosphotriesterase Type I dockerin domain 11
Serine metabolism enzymes domain ACT-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
HCP-like TPR-like 11
Translation proteins ThrRS/AlaRS common domain 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
Trimeric LpxA-like enzymes Phosphoglucomutase, C-terminal domain 11
CBS-domain pair Nucleotidyltransferase 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
L,D-transpeptidase catalytic domain-like Sporulation related repeat 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
YWTD domain YWTD domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
L30e-like alpha/beta knot 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
HCP-like HCP-like 11
Carbamate kinase-like ACT-like 11
HIT-like HIT-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Sensory domain-like Sensory domain-like 11
HMA, heavy metal-associated domain HAD-like 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
YrdC/RibB RibA-like 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Bacterial muramidases Lysozyme-like 11
Lysozyme-like Nucleic acid-binding proteins 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Sporulation related repeat Cysteine proteinases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Acetyl-CoA synthetase-like ACP-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
HprK N-terminal domain-like CBS-domain pair 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
PUA domain-like alpha/beta knot 11
HD-domain/PDEase-like Nucleotidyltransferase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Kelch motif Kelch motif 11
Nucleotide-diphospho-sugar transferases Phosphoglucomutase, first 3 domains 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
EspE N-terminal domain-like Homodimeric domain of signal transducing histidine kinase 11
OMPA-like TSP type-3 repeat 11
Translation proteins Translation proteins 11
Translation proteins PRC-barrel domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
"Helical backbone" metal receptor "Helical backbone" metal receptor 11
HydA/Nqo6-like Nqo5-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
FabD/lysophospholipase-like Thioesterase/thiol ester dehydrase-isomerase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Outer membrane efflux proteins (OEP) 11
PurS-like PurM N-terminal domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
4Fe-4S ferredoxins Fe-only hydrogenase 11
PilZ domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Nudix Nudix 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Triger factor/SurA peptide-binding domain-like Triger factor/SurA peptide-binding domain-like 11
Nucleotidyltransferase TGS-like 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Chaperone J-domain lambda repressor-like DNA-binding domains 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Quinoprotein alcohol dehydrogenase-like Fibronectin type III 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
EspE N-terminal domain-like HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
HprK N-terminal domain-like DHH phosphoesterases 11
Cadherin-like Type I dockerin domain 11
TPR-like Lysozyme-like 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
MOP-like MOP-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Subtilisin-like Cadherin-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Ribokinase-like Nucleotidylyl transferase 11
Terpenoid cyclases/Protein prenyltransferases Fibronectin type III 11
Class I glutamine amidotransferase-like Homeodomain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Radical SAM enzymes RuvA domain 2-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Subtilisin-like Pectin lyase-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Trimeric LpxA-like enzymes Phosphoglucomutase, first 3 domains 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Nucleic acid-binding proteins BRCT domain 11
PreATP-grasp domain Aldolase 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Nucleotidyltransferase PHP domain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
CBS-domain pair P-loop containing nucleoside triphosphate hydrolases 11
TPR-like Carbohydrate-binding domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Ribosomal protein L6 Ribosomal protein L6 11
EAL domain-like HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
ClpP/crotonase NfeD domain-like 11
Histidine-containing phosphotransfer domain, HPT domain EspE N-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
CheY-like S-adenosyl-L-methionine-dependent methyltransferases 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Fe-only hydrogenase P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase Nucleotidyltransferase 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Tetrapyrrole methylase Class I glutamine amidotransferase-like 11
Single hybrid motif Single hybrid motif 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
Fucose-specific lectin Type I dockerin domain 11
Hsp33 domain HSP33 redox switch-like 11
NTF2-like Sec-C motif 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
4Fe-4S ferredoxins FMN-linked oxidoreductases 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Fibronectin type III Galactose-binding domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Zinc beta-ribbon DNA primase core 11
Nucleic acid-binding proteins beta-lactamase/transpeptidase-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Formate dehydrogenase/DMSO reductase, domains 1-3 PLP-dependent transferases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
FAD-linked oxidoreductase ALDH-like 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
TPR-like L,D-transpeptidase catalytic domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
HAMP domain-like EAL domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
4Fe-4S ferredoxins FMN-dependent nitroreductase-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
PurS-like PurM C-terminal domain-like 11
Galactose oxidase, central domain Galactose oxidase, central domain 11
Poly A polymerase C-terminal region-like ACT-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
alpha/beta-Hydrolases beta-Roll 11
RuvA domain 2-like MCP/YpsA-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
beta-Roll Cadherin-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Lysozyme-like LysM domain 11
HD-domain/PDEase-like TGS-like 11
LysM domain Cysteine proteinases 11
Radical SAM enzymes TPR-like 11
RuvA domain 2-like PsbU/PolX domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Metallo-dependent hydrolases Radical SAM enzymes 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
alpha/beta-Hydrolases Cadherin-like 11
Nitrous oxide reductase, N-terminal domain Tricorn protease N-terminal domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Cytochrome c Concanavalin A-like lectins/glucanases 11
Periplasmic binding protein-like II CheY-like 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
TPR-like P-loop containing nucleoside triphosphate hydrolases 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Galactose-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
ADC-like PLP-dependent transferases 11
YrdC/RibB Actin-like ATPase domain 11
Galactose oxidase, central domain Invasin/intimin cell-adhesion fragments 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
DNA methylase specificity domain DNA methylase specificity domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
2Fe-2S ferredoxin-like Actin-like ATPase domain 11
Zinc beta-ribbon Zinc beta-ribbon 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Rubredoxin-like Superoxide reductase-like 11
E set domains Pectin lyase-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Class II aaRS and biotin synthetases Translation proteins 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Chorismate mutase II ACT-like 11
Thiamin phosphate synthase Ribokinase-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
CBS-domain pair Homeodomain-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
OmpA-like OmpA-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
GIY-YIG endonuclease RuvA domain 2-like 11
CBS-domain pair PP2C-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
YlxR-like L30e-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
HydA/Nqo6-like HydB/Nqo4-like 11
PheT/TilS domain Putative DNA-binding domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
HD-domain/PDEase-like ACT-like 11
Nucleotide-diphospho-sugar transferases Phosphoglucomutase, C-terminal domain 11
Pectin lyase-like Invasin/intimin cell-adhesion fragments 11
RuvA domain 2-like BRCT domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Ribonuclease H-like HRDC-like 11
Homeodomain-like Probable bacterial effector-binding domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
DHH phosphoesterases Poly A polymerase C-terminal region-like 11
Acid proteases PDZ domain-like 11
GAF domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Quinoprotein alcohol dehydrogenase-like Calcium-dependent phosphotriesterase 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
PIN domain-like DNA/RNA polymerases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Tetrapyrrole methylase P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like Phosphohistidine domain 11
RuvA domain 2-like RuvA domain 2-like 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
DHH phosphoesterases Nucleotidyltransferase 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Fe-only hydrogenase Homeodomain-like 11
CarD-like TRCF domain-like 11
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
GroEL equatorial domain-like GroEL apical domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Periplasmic binding protein-like II GlnB-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
HRDC-like HRDC-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
TPR-like Bacterial muramidases 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
CheC-like Surface presentation of antigens (SPOA) 11

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