SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Desulfovibrio magneticus RS-1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

772 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 12869
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 9559
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 8453
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 6845
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 6648
Homodimeric domain of signal transducing histidine kinase CheY-like 6242
PYP-like sensor domain (PAS domain) CheY-like 5741
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 3210
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2212
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 1916
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 194
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 1916
CheY-like P-loop containing nucleoside triphosphate hydrolases 183
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 178
CheY-like Homeodomain-like 161
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1611
CheY-like Histidine-containing phosphotransfer domain, HPT domain 1614
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 167
PYP-like sensor domain (PAS domain) GAF domain-like 1513
CheY-like HD-domain/PDEase-like 144
GAF domain-like Homodimeric domain of signal transducing histidine kinase 1412
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1412
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 113
Actin-like ATPase domain Actin-like ATPase domain 113
GAF domain-like CheY-like 119
CheY-like CheY-like 119
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 106
P-loop containing nucleoside triphosphate hydrolases Translation proteins 106
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 109
HAMP domain-like PYP-like sensor domain (PAS domain) 107
Methyl-accepting chemotaxis protein (MCP) signaling domain Sensory domain-like 106
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 104
CheY-like Nucleotide cyclase 107
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 103
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 91
CheY-like C-terminal effector domain of the bipartite response regulators 91
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 98
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 96
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 99
Sensory domain-like PYP-like sensor domain (PAS domain) 98
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 87
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 83
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 83
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 83
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 83
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 83
TPR-like TPR-like 87
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 83
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 83
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 83
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 83
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 77
CheW-like CheY-like 72
Calcium ATPase, transduction domain A HAD-like 75
Nucleotide cyclase EAL domain-like 76
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 71
PYP-like sensor domain (PAS domain) Homeodomain-like 75
Homeodomain-like Homeodomain-like 75
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 62
HAD-like Calcium ATPase, transmembrane domain M 64
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 64
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 64
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 65
Translation proteins EF-G C-terminal domain-like 63
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 63
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 66
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 64
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 65
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 63
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 66
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 66
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 52
Sensory domain-like Nucleotide cyclase 52
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 54
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 52
GAF domain-like Homeodomain-like 52
PurM N-terminal domain-like PurM C-terminal domain-like 52
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 54
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 52
Homodimeric domain of signal transducing histidine kinase CheW-like 54
PYP-like sensor domain (PAS domain) EAL domain-like 55
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 55
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
CheY-like TPR-like 52
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 53
CheY-like Methylesterase CheB, C-terminal domain 54
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 54
LysM domain LysM domain 55
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 55
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 54
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 54
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 52
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 52
EF-G C-terminal domain-like EF-G C-terminal domain-like 52
4Fe-4S ferredoxins Fe-only hydrogenase 54
Histidine-containing phosphotransfer domain, HPT domain CheW-like 54
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 43
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 42
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
Sensory domain-like Sensory domain-like 42
FMN-binding split barrel UbiD C-terminal domain-like 43
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 44
HAMP domain-like CheY-like 44
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 44
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
CBS-domain pair CBS-domain pair 44
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
Sensory domain-like CheY-like 44
Alpha-L RNA-binding motif Pseudouridine synthase 32
Translation proteins Ribosomal protein S5 domain 2-like 31
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 31
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 33
CheY-like PP2C-like 31
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 31
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
lambda repressor-like DNA-binding domains LexA/Signal peptidase 31
GroES-like NAD(P)-binding Rossmann-fold domains 31
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 32
PreATP-grasp domain Rudiment single hybrid motif 32
PLP-binding barrel Alanine racemase C-terminal domain-like 31
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Nqo1 middle domain-like Nqo1C-terminal domain-like 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
Prim-pol domain P-loop containing nucleoside triphosphate hydrolases 32
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 33
Nucleic acid-binding proteins RuvA domain 2-like 33
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 33
4Fe-4S ferredoxins FMN-dependent nitroreductase-like 31
Resolvase-like Homeodomain-like 31
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 33
Periplasmic binding protein-like II Nucleotide cyclase 32
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 33
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 33
MOP-like MOP-like 31
Triger factor/SurA peptide-binding domain-like FKBP-like 32
DNA breaking-rejoining enzymes MOP-like 31
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 33
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Nitrite and sulphite reductase 4Fe-4S domain-like 4Fe-4S ferredoxins 32
HAMP domain-like PP2C-like 31
ACT-like ACT-like 32
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 32
PDZ domain-like PDZ domain-like 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
(Trans)glycosidases Glycosyl hydrolase domain 33
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 31
TTHA1013/TTHA0281-like Ribbon-helix-helix 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases TrpR-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
HD-domain/PDEase-like Nucleotidyltransferase 22
HMA, heavy metal-associated domain HAD-like 22
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 21
Nqo1 middle domain-like 4Fe-4S ferredoxins 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
CBS-domain pair Homodimeric domain of signal transducing histidine kinase 22
CBS-domain pair Nucleotide cyclase 21
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
PUA domain-like Ribosomal protein S5 domain 2-like 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Aldolase AFP III-like domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nqo5-like HydB/Nqo4-like 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 22
4Fe-4S ferredoxins Thioredoxin-like 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 22
"Winged helix" DNA-binding domain GAF domain-like 21
Nitrite/Sulfite reductase N-terminal domain-like 4Fe-4S ferredoxins 21
CBS-domain pair CheY-like 22
Ferritin-like Rubredoxin-like 21
Trypsin-like serine proteases PDZ domain-like 21
EAL domain-like CBS-domain pair 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
Nucleotidyltransferase ACT-like 22
NAD(P)-linked oxidoreductase alpha-helical ferredoxin 21
CBS-domain pair ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
Regulatory protein AraC Homeodomain-like 21
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 21
Nqo1C-terminal domain-like 4Fe-4S ferredoxins 22
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 22
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
PDZ domain-like Nitrogenase accessory factor-like 22
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
GAF domain-like GAF domain-like 22
E set domains Glycosyl hydrolase domain 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Voltage-gated potassium channels TrkA C-terminal domain-like 22
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
PYP-like sensor domain (PAS domain) HD-domain/PDEase-like 22
EF-hand LysM domain 22
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 22
Sensory domain-like Histidine-containing phosphotransfer domain, HPT domain 22
PhoU-like Protein kinase-like (PK-like) 21
SGNH hydrolase LysM domain 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Metallo-hydrolase/oxidoreductase Flavoproteins 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
Staphylococcal nuclease Ada DNA repair protein, N-terminal domain (N-Ada 10) 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
HlyD-like secretion proteins HlyD-like secretion proteins 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
CheY-like EAL domain-like 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Periplasmic binding protein-like II CheY-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
E set domains (Trans)glycosidases 22
HD-domain/PDEase-like ACT-like 22
2Fe-2S ferredoxin-like Fe-only hydrogenase 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
GAF domain-like Nucleotide cyclase 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 21
lambda repressor-like DNA-binding domains PYP-like sensor domain (PAS domain) 22
PHP domain-like P-loop containing nucleoside triphosphate hydrolases 21
PUA domain-like Nucleotidylyl transferase 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 22
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 22
Nqo1 FMN-binding domain-like 4Fe-4S ferredoxins 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Methyl-accepting chemotaxis protein (MCP) signaling domain Hemerythrin-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
CBS-domain pair PYP-like sensor domain (PAS domain) 22
alpha-helical ferredoxin Nucleotide-binding domain 22
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 21
MoeA N-terminal region -like MoeA C-terminal domain-like 22
EAL domain-like HD-domain/PDEase-like 21
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Histidine-containing phosphotransfer domain, HPT domain EspE N-terminal domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
HD-domain/PDEase-like TGS-like 11
YjeF N-terminal domain-like Ribokinase-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
lambda repressor-like DNA-binding domains Homodimeric domain of signal transducing histidine kinase 11
DNA methylase specificity domain DNA methylase specificity domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
NAD(P)-binding Rossmann-fold domains Bet v1-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Chorismate mutase II Periplasmic binding protein-like II 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
ACT-like 4Fe-4S ferredoxins 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
CarD-like TRCF domain-like 11
4Fe-4S ferredoxins HydA/Nqo6-like 11
Rudiment single hybrid motif post-HMGL domain-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Translation proteins "Winged helix" DNA-binding domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Aldolase post-HMGL domain-like 11
Sensory domain-like HAMP domain-like 11
Lysozyme-like LysM domain 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
TGS-like ACT-like 11
Radical SAM enzymes S-adenosyl-L-methionine-dependent methyltransferases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Hedgehog/intein (Hint) domain PFL-like glycyl radical enzymes 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Rhodanese/Cell cycle control phosphatase 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases Phosphoglycerate mutase-like 11
cAMP-binding domain-like FliG 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
cAMP-binding domain-like CBS-domain pair 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
PYP-like sensor domain (PAS domain) Hemerythrin-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Ribosomal protein L6 Ribosomal protein L6 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
MgtE N-terminal domain-like CBS-domain pair 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 11
FAD/NAD(P)-binding domain Nucleotide-binding domain 11
Clc chloride channel CBS-domain pair 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Ligand-binding domain in the NO signalling and Golgi transport 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Trypsin-like serine proteases Multiheme cytochromes 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Thioredoxin-like Thioredoxin-like 11
HCP-like HCP-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
FAD-binding/transporter-associated domain-like 4Fe-4S ferredoxins 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
DNA clamp DNA clamp 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
DHH phosphoesterases CBS-domain pair 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
PHP domain-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
ACT-like PYP-like sensor domain (PAS domain) 11
Hedgehog/intein (Hint) domain Homing endonucleases 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
WD40 repeat-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
FAD-linked oxidoreductase ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Pectin lyase-like Pectin lyase-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Sec-C motif TPR-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Nucleic acid-binding proteins GAD domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
lambda repressor-like DNA-binding domains Histidine-containing phosphotransfer domain, HPT domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
PGBD-like Lysozyme-like 11
FwdE-like Molybdenum cofactor biosynthesis proteins 11
TPR-like Lysozyme-like 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
Nucleic acid-binding proteins BRCT domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
"Winged helix" DNA-binding domain HRDC-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
Phase 1 flagellin Phase 1 flagellin 11
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain GAF domain-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Nudix Nudix 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
TPR-like Zn-dependent exopeptidases 11
Lysozyme-like Nucleic acid-binding proteins 11
GIY-YIG endonuclease RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Ribonuclease H-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Bacterial muramidases TPR-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
ACT-like Homeodomain-like 11
ACT-like Formyltransferase 11
Trigger factor ribosome-binding domain FKBP-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Rhodanese/Cell cycle control phosphatase Ferritin-like 11
Class II aaRS and biotin synthetases Translation proteins 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Iron-dependent repressor protein, dimerization domain C-terminal domain of transcriptional repressors 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
WD40 repeat-like Caspase-like 11
EreA/ChaN-like PDZ domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SpoIIaa-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Tex N-terminal region-like Ribonuclease H-like 11
YrdC/RibB RibA-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Acetyl-CoA synthetase-like ACP-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
Ribbon-helix-helix ACT-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases DNA/RNA polymerases 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
DNA-glycosylase Nudix 11
Glutathione synthetase ATP-binding domain-like Concanavalin A-like lectins/glucanases 11
2Fe-2S ferredoxin-like ADC-like 11
CBS-domain pair Poly A polymerase C-terminal region-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Tropomyosin OmpA-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
2Fe-2S ferredoxin-like Thioredoxin-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Phase 1 flagellin 3-carboxy-cis,cis-mucoante lactonizing enzyme 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Bacterial muramidases Lysozyme-like 11
Calcium-dependent phosphotriesterase PYP-like sensor domain (PAS domain) 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
DNA repair protein MutS, domain III SMR domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
PTS system fructose IIA component-like HPr-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
NTF2-like Sec-C motif 11
Putative DNA-binding domain Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
HCP-like Trypsin-like serine proteases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Chorismate mutase II ACT-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Nucleotidylyl transferase tRNA-binding arm 11
HydA/Nqo6-like HydB/Nqo4-like 11
CBS-domain pair Histidine-containing phosphotransfer domain, HPT domain 11
GAF domain-like PP2C-like 11
RuvA domain 2-like RuvA domain 2-like 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Barwin-like endoglucanases Sporulation related repeat 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
DHH phosphoesterases Poly A polymerase C-terminal region-like 11
PDZ domain-like ClpP/crotonase 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
ACP-like Trimeric LpxA-like enzymes 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
ACP-like Acyl-CoA N-acyltransferases (Nat) 11
Peptide methionine sulfoxide reductase Mss4-like 11
Inosine monophosphate dehydrogenase (IMPDH) Inosine monophosphate dehydrogenase (IMPDH) 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Quinoprotein alcohol dehydrogenase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
PLP-dependent transferases Class I glutamine amidotransferase-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Translation proteins 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Galactose-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Nucleotide-diphospho-sugar transferases HD-domain/PDEase-like 11
Pectin lyase-like Glycoside hydrolase/deacetylase 11
Tex N-terminal region-like RuvA domain 2-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Ribonuclease H-like mu transposase, C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
vWA-like OmpA-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Zinc beta-ribbon Zinc beta-ribbon 11
vWA-like TPR-like 11
Cupredoxins Cupredoxins 11
ClpP/crotonase NfeD domain-like 11
EF-hand TPR-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
4Fe-4S ferredoxins Radical SAM enzymes 11
Thioredoxin-like Nqo1C-terminal domain-like 11
ACT-like HAD-like 11
Thioredoxin-like Nqo1 middle domain-like 11
Cytochrome c Multiheme cytochromes 11
4Fe-4S ferredoxins ADC-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
CheY-like SpoIIaa-like 11
TPR-like OMPA-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
post-HMGL domain-like Single hybrid motif 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Radical SAM enzymes NAD(P)-binding Rossmann-fold domains 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
FAD-linked oxidases, C-terminal domain 4Fe-4S ferredoxins 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Periplasmic binding protein-like II Voltage-gated potassium channels 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Periplasmic binding protein-like II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Pentapeptide repeat-like 11
PTS system fructose IIA component-like Phosphoenolpyruvate/pyruvate domain 11
PUA domain-like alpha/beta knot 11
Quinoprotein alcohol dehydrogenase-like PYP-like sensor domain (PAS domain) 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
lambda repressor-like DNA-binding domains GAF domain-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
lambda repressor-like DNA-binding domains ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Quinoprotein alcohol dehydrogenase-like Homodimeric domain of signal transducing histidine kinase 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
Mechanosensitive channel protein MscS (YggB), C-terminal domain cAMP-binding domain-like 11
Thiolase-like Thiolase-like 11
CBS-domain pair Nucleotidyltransferase 11
Quinoprotein alcohol dehydrogenase-like Calcium-dependent phosphotriesterase 11
ClpP/crotonase ClpP/crotonase 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
alpha-helical ferredoxin Respiratory nitrate reductase 1 gamma chain 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
HPr-like Phosphohistidine domain 11
Alkaline phosphatase-like Alkaline phosphatase-like 11
EspE N-terminal domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Nucleic acid-binding proteins HD-domain/PDEase-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Translation proteins ThrRS/AlaRS common domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
LysM domain TPR-like 11
FAD/NAD(P)-binding domain Radical SAM enzymes 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Sensory domain-like GAF domain-like 11
Fe-only hydrogenase Thioredoxin-like 11
PreATP-grasp domain Aldolase 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Calcium-dependent phosphotriesterase Homodimeric domain of signal transducing histidine kinase 11
Calcium-dependent phosphotriesterase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Rubredoxin-like Superoxide reductase-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Flavoproteins Flavoproteins 11
PilZ domain-like PilZ domain-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Caspase-like 11
Carbamate kinase-like PUA domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Aldolase Single hybrid motif 11
NTF2-like NTF2-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
L,D-transpeptidase catalytic domain-like NTF2-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PTS system fructose IIA component-like Phosphohistidine domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Nucleic acid-binding proteins beta-lactamase/transpeptidase-like 11
PYP-like sensor domain (PAS domain) PP2C-like 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Periplasmic binding protein-like II GlnB-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Nucleotide cyclase TPR-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain Hedgehog/intein (Hint) domain 11
Formyltransferase FMT C-terminal domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
EspE N-terminal domain-like Homodimeric domain of signal transducing histidine kinase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
PreATP-grasp domain Single hybrid motif 11
Phosphohistidine domain Rhodanese/Cell cycle control phosphatase 11
RmlC-like cupins Homeodomain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Thioredoxin-like Six-hairpin glycosidases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Class I glutamine amidotransferase-like Homeodomain-like 11
Rudiment single hybrid motif Aldolase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
CheY-like Ribosomal protein S5 domain 2-like 11
Alpha-L RNA-binding motif P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
PreATP-grasp domain PreATP-grasp domain 11
Rudiment single hybrid motif Single hybrid motif 11
Putative DNA-binding domain mu transposase, C-terminal domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Carbamate kinase-like ACT-like 11
PHP domain-like AF1531-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes Nucleotidylyl transferase 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Globin-like Nucleotide cyclase 11
HydA/Nqo6-like Nqo5-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
Methylesterase CheB, C-terminal domain GAF domain-like 11
Concanavalin A-like lectins/glucanases Rhodanese/Cell cycle control phosphatase 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
EspE N-terminal domain-like CheW-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Alpha subunit of glutamate synthase, C-terminal domain FAD/NAD(P)-binding domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Calcium-dependent phosphotriesterase CheY-like 11
(Phosphotyrosine protein) phosphatases II Autotransporter 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Pseudouridine synthase P-loop containing nucleoside triphosphate hydrolases 11
Quinoprotein alcohol dehydrogenase-like CheY-like 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
PLP-dependent transferases P-loop containing nucleoside triphosphate hydrolases 11
ARM repeat ARM repeat 11
S-adenosyl-L-methionine-dependent methyltransferases GAF domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Homing endonucleases PFL-like glycyl radical enzymes 11
4Fe-4S ferredoxins FMN-linked oxidoreductases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) Ligand-binding domain in the NO signalling and Golgi transport 11
Translation proteins PRC-barrel domain 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
Zinc beta-ribbon DNA primase core 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Class II aaRS and biotin synthetases SufE/NifU 11
GAF domain-like HD-domain/PDEase-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Ribonuclease H-like RuvA domain 2-like 11
Alpha subunit of glutamate synthase, C-terminal domain 4Fe-4S ferredoxins 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 11
PreATP-grasp domain post-HMGL domain-like 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
FliG FliG 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
SirA-like DsrEFH-like 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
CheC-like Surface presentation of antigens (SPOA) 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Pectin lyase-like Autotransporter 11
Nucleotidyltransferase TGS-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
PIN domain-like DNA/RNA polymerases 11
Tetrapyrrole methylase HemD-like 11
CBS-domain pair ACT-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
LysM domain Sm-like ribonucleoproteins 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
PTS system fructose IIA component-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
lambda repressor-like DNA-binding domains CheY-like 11
HAMP domain-like Nucleotide cyclase 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
GlnB-like CBS-domain pair 11
DHH phosphoesterases Nucleotidyltransferase 11
Homeodomain-like Probable bacterial effector-binding domain 11
Phosphohistidine domain Concanavalin A-like lectins/glucanases 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Nucleotide cyclase Hemerythrin-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain Homing endonucleases 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
RuvA domain 2-like BRCT domain 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Sm-like ribonucleoproteins cAMP-binding domain-like 11
alpha-helical ferredoxin alpha-helical ferredoxin 11

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