SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Streptococcus uberis 0140J

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

448 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2310
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 103
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 92
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 93
CheY-like C-terminal effector domain of the bipartite response regulators 81
Actin-like ATPase domain Actin-like ATPase domain 73
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 71
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 73
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Homeodomain-like SIS domain 61
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 65
P-loop containing nucleoside triphosphate hydrolases Translation proteins 55
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 51
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 53
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 51
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 51
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 51
MetI-like Periplasmic binding protein-like II 44
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 42
Phoshotransferase/anion transport protein PTS system IIB component-like 43
(Trans)glycosidases Glycosyl hydrolase domain 42
Alpha-L RNA-binding motif Pseudouridine synthase 41
Calcium ATPase, transduction domain A HAD-like 43
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 41
Thiolase-like Thiolase-like 41
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 42
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 43
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 43
HAD-like Calcium ATPase, transmembrane domain M 43
"Winged helix" DNA-binding domain Chorismate lyase-like 41
Glucose permease domain IIB Duplicated hybrid motif 42
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Lysozyme-like beta-lactamase/transpeptidase-like 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
GroES-like NAD(P)-binding Rossmann-fold domains 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
PreATP-grasp domain Rudiment single hybrid motif 31
RuvA domain 2-like Nucleic acid-binding proteins 33
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
PTS-regulatory domain, PRD PTS system IIB component-like 32
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 32
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 32
PLP-binding barrel Alanine racemase C-terminal domain-like 31
Translation proteins EF-G C-terminal domain-like 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
P-loop containing nucleoside triphosphate hydrolases MOP-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Phospholipase D/nuclease Phospholipase D/nuclease 22
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 21
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
E set domains (Trans)glycosidases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
L30e-like alpha/beta knot 21
Ribonuclease H-like Nucleic acid-binding proteins 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 22
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 22
Galactose-binding domain-like (Trans)glycosidases 22
"Winged helix" DNA-binding domain PTS system IIB component-like 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
PhtA domain-like PhtA domain-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Homeodomain-like Homeodomain-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 21
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 22
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
"Winged helix" DNA-binding domain CBS-domain pair 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 21
MalF N-terminal region-like MetI-like 22
SacY-like RNA-binding domain PTS-regulatory domain, PRD 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 21
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
Nucleotidylyl transferase Riboflavin kinase-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
RuvA domain 2-like RuvA domain 2-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
RNase III domain-like dsRNA-binding domain-like 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
SirA-like DsrEFH-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Formyltransferase FMT C-terminal domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Trypsin-like serine proteases PDZ domain-like 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 11
E set domains Glycosyl hydrolase domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Translation proteins PRC-barrel domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain SirA-like 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
DNA clamp DNA clamp 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
"Winged helix" DNA-binding domain GAF domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
RuvA domain 2-like BRCT domain 11
HD-domain/PDEase-like TGS-like 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
PhtA domain-like L domain-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
GIY-YIG endonuclease RuvA domain 2-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Thioredoxin-like GST C-terminal domain-like 11
Nucleotidyltransferase TGS-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
DNA-glycosylase Nudix 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
PRTase-like PRTase-like 11
Flavoproteins FAD/NAD(P)-binding domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Thioredoxin-like Thioredoxin-like 11
ALDH-like Dehydroquinate synthase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Sensory domain-like Sporulation response regulatory protein Spo0B 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Single hybrid motif CoA-dependent acyltransferases 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
S-adenosyl-L-methionine-dependent methyltransferases DNA methylase specificity domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
FMN-linked oxidoreductases Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Acyl-CoA N-acyltransferases (Nat) tRNA-binding arm 11
DNA repair protein MutS, domain III SMR domain-like 11
Rhodanese/Cell cycle control phosphatase SirA-like 11
PTS system fructose IIA component-like PTS IIb component 11
Nucleic acid-binding proteins PheT/TilS domain 11
Aldolase post-HMGL domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Translation proteins Translation proteins 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
ACT-like ACT-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Ribonuclease H-like RuvA domain 2-like 11
PreATP-grasp domain PreATP-grasp domain 11
"Winged helix" DNA-binding domain Putative transcriptional regulator TM1602, C-terminal domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
(Trans)glycosidases Cyclophilin-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Myosin rod fragments G protein-binding domain 11
Ribosomal protein L6 Ribosomal protein L6 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins BRCT domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Ribonuclease H-like DNA/RNA polymerases 11
TGS-like Class II aaRS and biotin synthetases 11
TPR-like TPR-like 11
FAD/NAD(P)-binding domain DsrEFH-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
PHP domain-like Nucleic acid-binding proteins 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases Translation proteins 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Starch-binding domain-like E set domains 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
CarD-like TRCF domain-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
GAF domain-like GAF domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Regulatory protein AraC Homeodomain-like 11
"Winged helix" DNA-binding domain HprK N-terminal domain-like 11
HD-domain/PDEase-like ACT-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Rhodanese/Cell cycle control phosphatase DsrEFH-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain Galactose-binding domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Nucleotidyltransferase ACT-like 11
"Winged helix" DNA-binding domain TrkA C-terminal domain-like 11
lambda repressor-like DNA-binding domains lambda repressor-like DNA-binding domains 11
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Serine metabolism enzymes domain ACT-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Glutamine synthetase/guanido kinase Glutathione synthetase ATP-binding domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Nucleotidylyl transferase tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
Class II aaRS and biotin synthetases SufE/NifU 11
Staphylokinase/streptokinase Staphylokinase/streptokinase 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
PTS system IIB component-like PTS system IIB component-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
Flavoproteins Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
PPK N-terminal domain-like PHP14-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain DsrEFH-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
HMA, heavy metal-associated domain Cation efflux protein transmembrane domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
PheT/TilS domain Putative DNA-binding domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Starch-binding domain-like (Trans)glycosidases 11
CheY-like "Winged helix" DNA-binding domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
HMA, heavy metal-associated domain HAD-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
TGS-like Class II aaRS ABD-related 11
TGS-like ThrRS/AlaRS common domain 11
YjbR-like PUA domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Nucleic acid-binding proteins GAD domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
HprK N-terminal domain-like CBS-domain pair 11
FKBP-like Triger factor/SurA peptide-binding domain-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
"Winged helix" DNA-binding domain PRTase-like 11
HAD-like Cyclophilin-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
GroEL-intermediate domain like GroEL apical domain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain alpha/beta-Hydrolases 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
PHP14-like Phospholipase D/nuclease 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
HprK N-terminal domain-like PEP carboxykinase-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Zinc beta-ribbon DNA primase core 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
PIN domain-like Ribonuclease H-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Translation proteins Ribosomal protein S5 domain 2-like 11
PIN domain-like DNA/RNA polymerases 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
"Helical backbone" metal receptor Lipocalins 11
Carbamate kinase-like ACT-like 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
TGS-like ACT-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
YjgF-like YjgF-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Hsp33 domain HSP33 redox switch-like 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Tex N-terminal region-like Ribonuclease H-like 11
Peptidoglycan deacetylase N-terminal noncatalytic region Glycoside hydrolase/deacetylase 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
CBS-domain pair ACT-like 11
FAD/NAD(P)-binding domain SirA-like 11
PUA domain-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases Microbial and mitochondrial ADK, insert "zinc finger" domain 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
Tex N-terminal region-like RuvA domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11

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