SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Anaeromyxobacter sp. Fw109-5

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

832 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 8939
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 3813
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3424
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3422
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 3222
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2913
CheY-like Homodimeric domain of signal transducing histidine kinase 2820
Actin-like ATPase domain Actin-like ATPase domain 269
CheY-like Homeodomain-like 253
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2416
CheY-like P-loop containing nucleoside triphosphate hydrolases 242
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 234
GAF domain-like Homodimeric domain of signal transducing histidine kinase 1913
GroES-like NAD(P)-binding Rossmann-fold domains 181
CheY-like PYP-like sensor domain (PAS domain) 1614
TPR-like TPR-like 1615
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 154
PYP-like sensor domain (PAS domain) GAF domain-like 1513
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 143
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 145
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 135
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1210
P-loop containing nucleoside triphosphate hydrolases Translation proteins 126
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 127
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 115
Multiheme cytochromes Multiheme cytochromes 117
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 117
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 101
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 101
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 103
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 102
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 94
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 94
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 98
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 94
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 95
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 94
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 94
CheY-like GAF domain-like 98
PYP-like sensor domain (PAS domain) Homeodomain-like 85
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 85
Triger factor/SurA peptide-binding domain-like FKBP-like 86
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 84
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 73
Translation proteins EF-G C-terminal domain-like 73
CheY-like C-terminal effector domain of the bipartite response regulators 71
CheY-like CheY-like 77
Histidine-containing phosphotransfer domain, HPT domain CheW-like 73
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 73
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 76
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 73
Phospholipase D/nuclease Phospholipase D/nuclease 74
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 74
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 62
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 65
EF-G C-terminal domain-like EF-G C-terminal domain-like 62
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 64
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 63
Calcium ATPase, transduction domain A HAD-like 64
Cytochrome c Cytochrome c 64
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 62
cAMP-binding domain-like CBS-domain pair 63
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 65
HAD-like Calcium ATPase, transmembrane domain M 64
PreATP-grasp domain Rudiment single hybrid motif 65
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 64
CheY-like Methylesterase CheB, C-terminal domain 61
ACT-like ACT-like 63
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 65
CheW-like CheY-like 51
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 53
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 53
CheY-like Nucleotide cyclase 55
Trypsin-like serine proteases PDZ domain-like 52
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 52
Histidine-containing phosphotransfer domain, HPT domain CheY-like 51
CBS-domain pair Nucleotidyltransferase 53
ClpP/crotonase ClpP/crotonase 53
Thiolase-like Thiolase-like 51
Cupredoxins Cupredoxins 54
Nucleic acid-binding proteins Nucleic acid-binding proteins 55
GAF domain-like Homeodomain-like 54
Homeodomain-like Homeodomain-like 53
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 54
PurM N-terminal domain-like PurM C-terminal domain-like 52
GAF domain-like GAF domain-like 55
Alpha-L RNA-binding motif Pseudouridine synthase 42
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 43
TSP type-3 repeat OmpA-like 42
cAMP-binding domain-like Nucleotidyltransferase 42
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 43
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
GAF domain-like Nucleotide cyclase 44
(Trans)glycosidases Glycosyl hydrolase domain 43
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 42
Thioredoxin-like GST C-terminal domain-like 41
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Translation proteins Ribosomal protein S5 domain 2-like 41
Protein kinase-like (PK-like) TPR-like 44
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 41
E set domains (Trans)glycosidases 43
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 43
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 41
P-loop containing nucleoside triphosphate hydrolases MOP-like 41
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 41
SMAD/FHA domain Nucleotide cyclase 42
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 33
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 32
CheY-like HD-domain/PDEase-like 33
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 32
NAD(P)-binding Rossmann-fold domains ACT-like 33
HAMP domain-like PYP-like sensor domain (PAS domain) 33
E set domains Glycosyl hydrolase domain 32
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 32
Glutathione synthetase ATP-binding domain-like Single hybrid motif 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
PreATP-grasp domain Single hybrid motif 33
PDZ domain-like PDZ domain-like 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 32
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 32
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 32
Chaperone J-domain TPR-like 33
P-loop containing nucleoside triphosphate hydrolases TPR-like 33
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 31
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 32
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 32
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 32
PDZ domain-like ClpP/crotonase 31
DPP6 N-terminal domain-like alpha/beta-Hydrolases 31
PLP-binding barrel Alanine racemase C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
C-terminal effector domain of the bipartite response regulators TPR-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 31
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
Metalloproteases ("zincins"), catalytic domain TPR-like 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Single hybrid motif CoA-dependent acyltransferases 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Rudiment single hybrid motif Single hybrid motif 33
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Starch-binding domain-like Starch-binding domain-like 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Homodimeric domain of signal transducing histidine kinase CheW-like 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nucleotidyltransferase ACT-like 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 21
PUA domain-like Ribosomal protein S5 domain 2-like 21
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 22
Nucleotide-binding domain 4Fe-4S ferredoxins 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
vWA-like Class I glutamine amidotransferase-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
HIT-like P-loop containing nucleoside triphosphate hydrolases 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 21
cAMP-binding domain-like FAD/NAD(P)-binding domain 21
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 21
HD-domain/PDEase-like Nucleotidyltransferase 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
P-loop containing nucleoside triphosphate hydrolases TGS-like 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
P-loop containing nucleoside triphosphate hydrolases LexA/Signal peptidase 21
ARM repeat ARM repeat 22
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 22
PilZ domain-like CheY-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Multiheme cytochromes Fibronectin type III 22
GroEL equatorial domain-like GroEL apical domain-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 21
EspE N-terminal domain-like TPR-like 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
CBS-domain pair Nucleotidyltransferase substrate binding subunit/domain 21
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Sigma2 domain of RNA polymerase sigma factors NTF2-like 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
TK C-terminal domain-like 4Fe-4S ferredoxins 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 22
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
SMAD/FHA domain Homeodomain-like 22
cAMP-binding domain-like Nucleotidyltransferase substrate binding subunit/domain 21
alpha-helical ferredoxin Nucleotide-binding domain 22
CheY-like TPR-like 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 21
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 22
Translation proteins ThrRS/AlaRS common domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 22
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 22
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 22
Starch-binding domain-like Porins 22
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 21
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 21
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
PrpR receptor domain-like Homeodomain-like 21
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 21
TolA/TonB C-terminal domain Porins 22
Clc chloride channel CBS-domain pair 22
Sensory domain-like HAMP domain-like 22
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 22
Nucleic acid-binding proteins RuvA domain 2-like 22
Phospholipase D/nuclease LexA/Signal peptidase 21
HD-domain/PDEase-like ACT-like 22
HIT-like Phospholipase D/nuclease 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
GroEL equatorial domain-like GroEL-intermediate domain like 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 21
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 21
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
DinB/YfiT-like putative metalloenzymes C-type lectin-like 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Nucleotide-binding domain Nucleotide-binding domain 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
GroEL-intermediate domain like GroEL apical domain-like 21
HIT-like LexA/Signal peptidase 21
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 21
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Nucleotidyltransferase PHP domain-like 21
PreATP-grasp domain PreATP-grasp domain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
CheY-like EspE N-terminal domain-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
tRNA-binding arm Class II aaRS and biotin synthetases 22
DNA polymerase beta, N-terminal domain-like PHP domain-like 21
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 21
TPR-like Lysozyme-like 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain Cobalamin (vitamin B12)-binding domain 11
SMAD/FHA domain Protein kinase-like (PK-like) 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
TPR-like Periplasmic binding protein-like I 11
TPR-like Bacterial muramidases 11
Galactose-binding domain-like Six-hairpin glycosidases 11
PreATP-grasp domain ClpP/crotonase 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Metalloproteases ("zincins"), catalytic domain PA domain 11
"Winged helix" DNA-binding domain GAF domain-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Protein kinase-like (PK-like) Glycosyl hydrolase domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
post-HMGL domain-like Single hybrid motif 11
Riboflavin synthase domain-like Ferritin-like 11
NAD(P)-binding Rossmann-fold domains Acetyl-CoA synthetase-like 11
Ferritin-like Calcium ATPase, transduction domain A 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
DmpA/ArgJ-like Carbamate kinase-like 11
TPR-like Cysteine proteinases 11
Nucleotidyltransferase Nucleotidyltransferase 11
Putative DNA-binding domain Periplasmic binding protein-like II 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Acetyl-CoA synthetase-like Acyl-CoA N-acyltransferases (Nat) 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
Ferredoxin reductase-like, C-terminal NADP-linked domain alpha-helical ferredoxin 11
Protein kinase-like (PK-like) Quinoprotein alcohol dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
cAMP-binding domain-like ThrRS/AlaRS common domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Rudiment single hybrid motif post-HMGL domain-like 11
HAMP domain-like PP2C-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
HIT-like HIT-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Adenine nucleotide alpha hydrolases-like P-loop containing nucleoside triphosphate hydrolases 11
YVTN repeat-like/Quinoprotein amine dehydrogenase 3-carboxy-cis,cis-mucoante lactonizing enzyme 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
PheT/TilS domain Putative DNA-binding domain 11
Zn-dependent exopeptidases PDZ domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
HAMP domain-like Nucleotide cyclase 11
4Fe-4S ferredoxins Metallo-hydrolase/oxidoreductase 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
Galactose mutarotase-like Six-hairpin glycosidases 11
PilZ domain-like Actin-like ATPase domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
4Fe-4S ferredoxins HydA/Nqo6-like 11
Macro domain-like Zn-dependent exopeptidases 11
FMN-binding split barrel UbiD C-terminal domain-like 11
alpha-helical ferredoxin Ferritin-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
HAMP domain-like GAF domain-like 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
alpha/beta-Hydrolases NAD(P)-binding Rossmann-fold domains 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Triger factor/SurA peptide-binding domain-like Triger factor/SurA peptide-binding domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
YVTN repeat-like/Quinoprotein amine dehydrogenase E set domains 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Protein kinase-like (PK-like) WD40 repeat-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
LEA14-like LEA14-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
PreATP-grasp domain post-HMGL domain-like 11
Subtilisin-like Galactose-binding domain-like 11
Blood coagulation inhibitor (disintegrin) Blood coagulation inhibitor (disintegrin) 11
PHP domain-like AF1531-like 11
Nucleic acid-binding proteins BRCT domain 11
GlnB-like CBS-domain pair 11
Carboxypeptidase regulatory domain-like Porins 11
PRTase-like alpha/beta-Hydrolases 11
PRTase-like PRTase-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
SMAD/FHA domain SMAD/FHA domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
cAMP-binding domain-like cAMP-binding domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
FMN-binding split barrel GAF domain-like 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
FMN-binding split barrel Acyl-CoA N-acyltransferases (Nat) 11
4Fe-4S ferredoxins Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
MoaD/ThiS Molybdopterin synthase subunit MoaE 11
Nucleotide-diphospho-sugar transferases NAD(P)-binding Rossmann-fold domains 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
DNA-glycosylase Nudix 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Translation proteins "Winged helix" DNA-binding domain 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
MetI-like MetI-like 11
TSP type-3 repeat TSP type-3 repeat 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Homodimeric domain of signal transducing histidine kinase Nucleotide cyclase 11
Invasin/intimin cell-adhesion fragments 3-carboxy-cis,cis-mucoante lactonizing enzyme 11
Formyltransferase FMT C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
MgtE N-terminal domain-like CBS-domain pair 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Carbamate kinase-like PUA domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
CarD-like TRCF domain-like 11
alpha/beta-Hydrolases Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Chorismate mutase II Aldolase 11
Cupredoxins Starch-binding domain-like 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
YdhG-like YdhG-like 11
E set domains E set domains 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Nqo5-like HydB/Nqo4-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
DNA clamp DNA clamp 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
L30e-like alpha/beta knot 11
Ribonuclease H-like HRDC-like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Carboxypeptidase regulatory domain-like Starch-binding domain-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
TGS-like Class II aaRS ABD-related 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
HMA, heavy metal-associated domain Cation efflux protein transmembrane domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Malate synthase G Phosphoenolpyruvate/pyruvate domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases Periplasmic binding protein-like II 11
Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Quinoprotein alcohol dehydrogenase-like WD40 repeat-like 11
PA domain CalX-like 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
YrdC/RibB RibA-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Homeodomain-like TATA-box binding protein-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
L-aspartase-like L-aspartase-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
PreATP-grasp domain Aldolase 11
TolA/TonB C-terminal domain Carboxypeptidase regulatory domain-like 11
Cupredoxins Fibronectin type III 11
ACT-like Formyltransferase 11
YWTD domain Concanavalin A-like lectins/glucanases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Lysozyme-like LysM domain 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Trigger factor ribosome-binding domain FKBP-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
"Winged helix" DNA-binding domain Rhodanese/Cell cycle control phosphatase 11
YWTD domain YWTD domain 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Respiratory nitrate reductase 1 gamma chain MFS general substrate transporter 11
TGS-like ACT-like 11
3-carboxy-cis,cis-mucoante lactonizing enzyme YWTD domain 11
Trypsin-like serine proteases Toll/Interleukin receptor TIR domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
HMA, heavy metal-associated domain HAD-like 11
Translation proteins Translation proteins 11
CBS-domain pair CBS-domain pair 11
ClpP/crotonase NfeD domain-like 11
RmlC-like cupins RmlC-like cupins 11
CheW-like CheW-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
TGS-like Class II aaRS and biotin synthetases 11
Riboflavin synthase domain-like alpha-helical ferredoxin 11
DPP6 N-terminal domain-like Tricorn protease N-terminal domain 11
Carboxypeptidase regulatory domain-like TSP type-3 repeat 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
LysM domain LysM domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Aldolase Single hybrid motif 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Periplasmic binding protein-like II MetI-like 11
Toll/Interleukin receptor TIR domain tRNA-guanine transglycosylase 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Purple acid phosphatase, N-terminal domain Metallo-dependent phosphatases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Nucleotide-binding domain Ferritin-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
ISP domain ISP domain 11
Thioredoxin-like Thioredoxin-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Acetyl-CoA synthetase-like Glycerol-3-phosphate (1)-acyltransferase 11
Globin-like Homodimeric domain of signal transducing histidine kinase 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
Rudiment single hybrid motif ClpP/crotonase 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
PilZ domain-like Heat shock protein 70kD (HSP70), peptide-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
CBS-domain pair MgtE membrane domain-like 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
DNA repair protein MutS, domain III SMR domain-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Protein kinase-like (PK-like) (Trans)glycosidases 11
ADC-like 4Fe-4S ferredoxins 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
RNase III domain-like dsRNA-binding domain-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
CalX-like CalX-like 11
Aldolase post-HMGL domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
PA domain PDZ domain-like 11
TPR-like TRAP-like 11
Fibronectin type III Fibronectin type III 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Activating enzymes of the ubiquitin-like proteins FMN-dependent nitroreductase-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Actin-like ATPase domain Thiamin diphosphate-binding fold (THDP-binding) 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
YVTN repeat-like/Quinoprotein amine dehydrogenase YWTD domain 11
Nudix Metallo-hydrolase/oxidoreductase 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
Putative DNA-binding domain TTHA1013/TTHA0281-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
S-adenosyl-L-methionine-dependent methyltransferases Tropomyosin 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Ribosomal protein L25-like GatB/YqeY motif 11
Six-hairpin glycosidases Nucleotide-diphospho-sugar transferases 11
EspE N-terminal domain-like Pili subunits 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Homeodomain-like Ribonuclease H-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
Triger factor/SurA peptide-binding domain-like Thioredoxin-like 11
Acetyl-CoA synthetase-like ACP-like 11
cAMP-binding domain-like FabD/lysophospholipase-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
PIN domain-like Ribonuclease H-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
YajQ-like YajQ-like 11
Class II aaRS and biotin synthetases Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
NAD(P)-binding Rossmann-fold domains Glycerol-3-phosphate (1)-acyltransferase 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
Invasin/intimin cell-adhesion fragments E set domains 11
Myosin rod fragments OmpA-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Class II aaRS and biotin synthetases Nudix 11
PUA domain-like alpha/beta knot 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
PHP14-like Phospholipase D/nuclease 11
Actin-like ATPase domain HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Invasin/intimin cell-adhesion fragments YWTD domain 11
Lysozyme-like Nucleic acid-binding proteins 11
Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Rudiment single hybrid motif Aldolase 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HD-domain/PDEase-like 11
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 11
Nucleic acid-binding proteins beta-lactamase/transpeptidase-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Ribosome binding protein Y (YfiA homologue) Nucleic acid-binding proteins 11
SMAD/FHA domain GAF domain-like 11
Carbamate kinase-like ACT-like 11
Carboxypeptidase regulatory domain-like Multiheme cytochromes 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
CheY-binding domain of CheA CheW-like 11
NTF2-like alpha/beta-Hydrolases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Ribonuclease H-like DNA/RNA polymerases 11
CheY-like Chaperone J-domain 11
Carboxypeptidase regulatory domain-like PDZ domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
tRNA-guanine transglycosylase S-adenosyl-L-methionine-dependent methyltransferases 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Ferredoxin reductase-like, C-terminal NADP-linked domain Ferritin-like 11
3-carboxy-cis,cis-mucoante lactonizing enzyme Concanavalin A-like lectins/glucanases 11
Protein kinase-like (PK-like) E set domains 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
RuvA domain 2-like BRCT domain 11
UDP-Glycosyltransferase/glycogen phosphorylase HAD-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase YVTN repeat-like/Quinoprotein amine dehydrogenase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
cAMP-binding domain-like P-loop containing nucleoside triphosphate hydrolases 11
PKD domain PKD domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
E set domains YWTD domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Galactose mutarotase-like Galactose mutarotase-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 11
Nucleotide-binding domain ISP domain 11
CBS-domain pair ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Invasin/intimin cell-adhesion fragments YVTN repeat-like/Quinoprotein amine dehydrogenase 11
alpha/beta-Hydrolases TPR-like 11
Thioredoxin-like TPR-like 11
Metalloproteases ("zincins"), catalytic domain Pectin lyase-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
GIY-YIG endonuclease RuvA domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Nucleotide cyclase 11
Metalloproteases ("zincins"), catalytic domain CalX-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
PKD domain DPP6 N-terminal domain-like 11
Homeodomain-like DNA-glycosylase 11
Galactose-binding domain-like Purple acid phosphatase, N-terminal domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Nucleic acid-binding proteins GAD domain-like 11
Thioredoxin-like Six-hairpin glycosidases 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Starch-binding domain-like PDZ domain-like 11
Invasin/intimin cell-adhesion fragments Concanavalin A-like lectins/glucanases 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
E set domains Concanavalin A-like lectins/glucanases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
PA domain Zn-dependent exopeptidases 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Sec-C motif Creatinase/aminopeptidase 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Cupredoxins Carboxypeptidase regulatory domain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Nucleotidylyl transferase Riboflavin kinase-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
RmlC-like cupins Homeodomain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Ferritin-like HAD-like 11
HAMP domain-like HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
EspE N-terminal domain-like Chaperone J-domain 11
Cupredoxins Cytochrome c 11
HlyD-like secretion proteins Single hybrid motif 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
MM3350-like Mss4-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Nucleotidylyl transferase GatB/YqeY motif 11
Single hybrid motif Single hybrid motif 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Subtilisin-like Purple acid phosphatase, N-terminal domain 11
Superoxide reductase-like E set domains 11
Riboflavin synthase domain-like Nucleotide-binding domain 11
EspE N-terminal domain-like ARM repeat 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Nucleotidyltransferase TGS-like 11
(Trans)glycosidases (Trans)glycosidases 11
TATA-box binding protein-like DNA-glycosylase 11
Iron-dependent repressor protein, dimerization domain C-terminal domain of transcriptional repressors 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Concanavalin A-like lectins/glucanases 11
Methionine synthase domain Methionine synthase activation domain-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
PK beta-barrel domain-like Riboflavin synthase domain-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Hsp33 domain HSP33 redox switch-like 11
2Fe-2S ferredoxin-like FAD/NAD(P)-binding domain 11
Single hybrid motif ClpP/crotonase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Zinc beta-ribbon DNA primase core 11
Pseudouridine synthase PUA domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
JAB1/MPN domain Activating enzymes of the ubiquitin-like proteins 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Carboxypeptidase regulatory domain-like Carboxypeptidase regulatory domain-like 11
HD-domain/PDEase-like TGS-like 11
TolA/TonB C-terminal domain Starch-binding domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Globin-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PPK N-terminal domain-like PHP14-like 11
Periplasmic binding protein-like II ACT-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Homodimeric domain of signal transducing histidine kinase HD-domain/PDEase-like 11
"Helical backbone" metal receptor "Helical backbone" metal receptor 11
Nucleotidylyl transferase tRNA-binding arm 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
HCP-like HCP-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Serine metabolism enzymes domain ACT-like 11
TGS-like ThrRS/AlaRS common domain 11
Bacterial muramidases Lysozyme-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
PK beta-barrel domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PIN domain-like DNA/RNA polymerases 11
Periplasmic binding protein-like II Radical SAM enzymes 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
HAMP domain-like CheY-like 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
Nucleic acid-binding proteins PheT/TilS domain 11
TPR-like HCP-like 11
Ferredoxin reductase-like, C-terminal NADP-linked domain Nucleotide-binding domain 11
Chaperone J-domain lambda repressor-like DNA-binding domains 11
Protein kinase-like (PK-like) Adenine nucleotide alpha hydrolases-like 11
Urease, gamma-subunit Urease, beta-subunit 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
E set domains 3-carboxy-cis,cis-mucoante lactonizing enzyme 11
CBS-domain pair Homodimeric domain of signal transducing histidine kinase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
vWA-like Calcium-dependent phosphotriesterase 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Ferritin-like Rubredoxin-like 11
Putative DNA-binding domain Phoshotransferase/anion transport protein 11
ThrRS/AlaRS common domain P-loop containing nucleoside triphosphate hydrolases 11
Six-hairpin glycosidases PilZ domain-like 11
Putative DNA-binding domain CheY-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
MFS general substrate transporter MFS general substrate transporter 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Ribbon-helix-helix ACT-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11

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