SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Pseudomonas mendocina ymp

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

793 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 661
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4422
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2914
Homeodomain-like Homeodomain-like 265
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 234
Nucleotide cyclase EAL domain-like 2013
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 195
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 194
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 199
CheY-like C-terminal effector domain of the bipartite response regulators 181
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1813
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 171
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1713
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1710
Homodimeric domain of signal transducing histidine kinase CheY-like 1611
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 169
GroES-like NAD(P)-binding Rossmann-fold domains 153
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 155
Actin-like ATPase domain Actin-like ATPase domain 143
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 144
Thiolase-like Thiolase-like 142
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 137
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 136
P-loop containing nucleoside triphosphate hydrolases MOP-like 131
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 126
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 125
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 125
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 125
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 125
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 125
PYP-like sensor domain (PAS domain) EAL domain-like 1110
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1110
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 111
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 105
Thioredoxin-like GST C-terminal domain-like 102
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 105
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 95
CheY-like P-loop containing nucleoside triphosphate hydrolases 93
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 94
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 92
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 94
Class I glutamine amidotransferase-like Homeodomain-like 91
CheY-like CheY-like 99
PreATP-grasp domain Rudiment single hybrid motif 95
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 92
"Winged helix" DNA-binding domain PLP-dependent transferases 81
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 83
PYP-like sensor domain (PAS domain) CheY-like 86
CheY-like Homeodomain-like 82
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 83
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 83
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 71
ACT-like ACT-like 74
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
Folate-binding domain Aminomethyltransferase beta-barrel domain 73
(Trans)glycosidases Glycosyl hydrolase domain 66
CheY-like Nucleotide cyclase 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 64
PLP-binding barrel Alanine racemase C-terminal domain-like 62
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 66
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 61
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 54
Phospholipase D/nuclease Phospholipase D/nuclease 53
Alpha-L RNA-binding motif Pseudouridine synthase 52
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 51
Glutathione synthetase ATP-binding domain-like Single hybrid motif 54
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 55
HAD-like Calcium ATPase, transmembrane domain M 54
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 52
Rudiment single hybrid motif Single hybrid motif 54
PreATP-grasp domain Single hybrid motif 54
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
TrkA C-terminal domain-like TrkA C-terminal domain-like 52
Calcium ATPase, transduction domain A HAD-like 54
Regulatory protein AraC Homeodomain-like 51
Phage tail proteins Phage tail proteins 43
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
GAF domain-like PYP-like sensor domain (PAS domain) 44
ACT-like Formyltransferase 41
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 43
lambda repressor-like DNA-binding domains RmlC-like cupins 41
beta-Roll beta-Roll 44
Lysozyme-like beta-lactamase/transpeptidase-like 44
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 43
Phage tail proteins gp5 N-terminal domain-like 43
E set domains (Trans)glycosidases 44
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 42
CheY-like Histidine-containing phosphotransfer domain, HPT domain 44
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
PYP-like sensor domain (PAS domain) Homeodomain-like 43
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 41
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 44
CheW-like CheY-like 43
RmlC-like cupins Homeodomain-like 41
Phage tail proteins Phage fibre proteins 43
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 41
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
PurM N-terminal domain-like PurM C-terminal domain-like 42
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
RuvA domain 2-like Nucleic acid-binding proteins 44
gp5 N-terminal domain-like Phage fibre proteins 43
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 44
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
TPR-like C-terminal effector domain of the bipartite response regulators 32
Cytochrome c Cytochrome c 32
Methyl-accepting chemotaxis protein (MCP) signaling domain Sensory domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
"Winged helix" DNA-binding domain GAF domain-like 31
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
GAF domain-like Nucleotide cyclase 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 32
Single hybrid motif CoA-dependent acyltransferases 32
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
Histidine-containing phosphotransfer domain, HPT domain CheW-like 33
"Winged helix" DNA-binding domain Chorismate lyase-like 31
Aldolase post-HMGL domain-like 32
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
MetI-like MetI-like 33
Aconitase iron-sulfur domain LeuD/IlvD-like 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Nucleotide-diphospho-sugar transferases RmlC-like cupins 31
Cyclophilin-like PH0987 N-terminal domain-like 33
HD-domain/PDEase-like ACT-like 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
E set domains Glycosyl hydrolase domain 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Cupredoxins Cupredoxins 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
HMA, heavy metal-associated domain HAD-like 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Translation proteins EF-G C-terminal domain-like 33
ACT-like P-loop containing nucleoside triphosphate hydrolases 32
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 31
CheY-like HD-domain/PDEase-like 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 33
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 33
Homeodomain-like SIS domain 31
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
HD-domain/PDEase-like Nucleotidyltransferase 32
Nucleotidyltransferase ACT-like 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
ClpP/crotonase ClpP/crotonase 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 32
FKBP-like Triger factor/SurA peptide-binding domain-like 33
GAF domain-like Homodimeric domain of signal transducing histidine kinase 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 33
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 32
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
TPR-like TPR-like 22
P-loop containing nucleoside triphosphate hydrolases TPR-like 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
cAMP-binding domain-like CBS-domain pair 22
E set domains E set domains 22
HAMP domain-like CheY-like 22
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
PreATP-grasp domain Cyclophilin-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 21
Rudiment single hybrid motif PH0987 N-terminal domain-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
YrdC/RibB RibA-like 21
PUA domain-like Ribosomal protein S5 domain 2-like 22
HD-domain/PDEase-like TGS-like 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 21
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 21
MgtE N-terminal domain-like MgtE membrane domain-like 22
FliG FliG 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
HCP-like HCP-like 22
MgtE N-terminal domain-like CBS-domain pair 22
PreATP-grasp domain PH0987 N-terminal domain-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
PDZ domain-like ClpP/crotonase 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 22
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
Cyclophilin-like Single hybrid motif 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 22
CheY-like EAL domain-like 22
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 22
CoA-dependent acyltransferases CoA-dependent acyltransferases 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 21
CoA-dependent acyltransferases ACP-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
PDZ domain-like PDZ domain-like 22
ACP-like ACP-like 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Cupredoxins Cytochrome c 22
RuvA domain 2-like RuvA domain 2-like 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
Homodimeric domain of signal transducing histidine kinase CheW-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
HAMP domain-like PYP-like sensor domain (PAS domain) 21
2Fe-2S ferredoxin-like ADC-like 21
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
HD-domain/PDEase-like GAF domain-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
CBS-domain pair MgtE membrane domain-like 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
CheY-like Methylesterase CheB, C-terminal domain 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
post-HMGL domain-like Single hybrid motif 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Aldolase Single hybrid motif 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
PK beta-barrel domain-like PK C-terminal domain-like 21
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 22
Metallo-hydrolase/oxidoreductase SCP-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Nucleotidyltransferase TGS-like 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 22
(Trans)glycosidases Starch-binding domain-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
Acetyl-CoA synthetase-like ACP-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
Cyclophilin-like Cyclophilin-like 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Ribonuclease H-like DNA/RNA polymerases 22
FAD/NAD(P)-binding domain Folate-binding domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
HlyD-like secretion proteins HlyD-like secretion proteins 21
Trypsin-like serine proteases PDZ domain-like 22
Rudiment single hybrid motif Cyclophilin-like 22
PH0987 N-terminal domain-like Single hybrid motif 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
TGS-like ACT-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Periplasmic binding protein-like II Lysozyme-like 22
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 21
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 21
4Fe-4S ferredoxins ADC-like 21
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
Glycosyl hydrolase domain Starch-binding domain-like 22
GAF domain-like Homeodomain-like 21
Nucleic acid-binding proteins GAD domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Calcium-dependent phosphotriesterase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
HPr-like Phosphohistidine domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
PA domain Zn-dependent exopeptidases 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
vWA-like beta-Roll 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
TATA-box binding protein-like DNA-glycosylase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
DNA-glycosylase Nudix 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
"Winged helix" DNA-binding domain MOP-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
ACT-like HAD-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
P-loop containing nucleoside triphosphate hydrolases ARM repeat 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Class II aaRS and biotin synthetases Translation proteins 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
alpha-helical ferredoxin Nucleotide-binding domain 11
PreATP-grasp domain ClpP/crotonase 11
ISP domain Bet v1-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
cAMP-binding domain-like Nucleotide cyclase 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
HD-domain/PDEase-like C-terminal effector domain of the bipartite response regulators 11
Single hybrid motif ClpP/crotonase 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Phosphotyrosine protein phosphatases I "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
LysM domain LysM domain 11
Nucleotidylyl transferase tRNA-binding arm 11
Nucleotidylyl transferase YegP-like 11
Periplasmic binding protein-like II CheY-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Carbamate kinase-like PUA domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
NTF2-like Sec-C motif 11
HAMP domain-like Nucleotide cyclase 11
Zn-dependent exopeptidases LysM domain 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
GAF domain-like EAL domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Periplasmic binding protein-like II EAL domain-like 11
Chorismate mutase II ACT-like 11
Periplasmic binding protein-like II OmpA-like 11
DNA clamp DNA clamp 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
EAL domain-like Sensory domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
L30e-like alpha/beta knot 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Thioredoxin-like TPR-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
FAD-linked oxidoreductase ALDH-like 11
OMPA-like OmpA-like 11
GAF domain-like CheY-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleotide-diphospho-sugar transferases EspE N-terminal domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Globin-like Riboflavin synthase domain-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
PurS-like PurM N-terminal domain-like 11
Acyl-CoA N-acyltransferases (Nat) Glutathione synthetase ATP-binding domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Tex N-terminal region-like Ribonuclease H-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Homeodomain-like Probable bacterial effector-binding domain 11
YjeF N-terminal domain-like Ribokinase-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
RuvA domain 2-like JAB1/MPN domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
GroES-like GroES-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Translation proteins PRC-barrel domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
PHP14-like Phospholipase D/nuclease 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
SMAD/FHA domain SMAD/FHA domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
cAMP-binding domain-like Rhodanese/Cell cycle control phosphatase 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
PP2C-like Protein kinase-like (PK-like) 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Zinc beta-ribbon DNA primase core 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Flavoproteins Riboflavin synthase domain-like 11
CbiG N-terminal domain-like Tetrapyrrole methylase 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Galactose-binding domain-like Galactose-binding domain-like 11
Nudix Nudix 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
ACP-like alpha/beta-Hydrolases 11
TGS-like ThrRS/AlaRS common domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
YgfB-like Sec-C motif 11
FKBP-like FKBP-like 11
Pili subunits GspK insert domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Protein kinase-like (PK-like) TPR-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
UROD/MetE-like UROD/MetE-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Lysozyme-like LysM domain 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
TGS-like Class II aaRS and biotin synthetases 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
vWA-like TPR-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
ACT-like PYP-like sensor domain (PAS domain) 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Macro domain-like Zn-dependent exopeptidases 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
Barwin-like endoglucanases Sporulation related repeat 11
CBS-domain pair Nucleotide cyclase 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
Globin-like EAL domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases FAD/NAD(P)-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
PPK N-terminal domain-like PHP14-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Phage fibre proteins Phage fibre proteins 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Cupredoxins Starch-binding domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Ribonuclease H-like RuvA domain 2-like 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Hsp33 domain HSP33 redox switch-like 11
Protein kinase-like (PK-like) vWA-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
FMN-binding split barrel Riboflavin synthase domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Thioredoxin-like Nqo1 middle domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
Periplasmic binding protein-like II Nucleotide cyclase 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
RNase III domain-like dsRNA-binding domain-like 11
FMN-linked oxidoreductases Nitrite and sulphite reductase 4Fe-4S domain-like 11
YajQ-like YajQ-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
MOP-like MOP-like 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
TGS-like Class II aaRS ABD-related 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Putative DNA-binding domain Translation proteins 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
PLP-dependent transferases PLP-dependent transferases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
ClpP/crotonase NfeD domain-like 11
Ribbon-helix-helix ALDH-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Pseudouridine synthase PUA domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
ACT-like Homeodomain-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Ferritin-like HAD-like 11
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Chorismate mutase II Periplasmic binding protein-like II 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
MalF N-terminal region-like MetI-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Phase 1 flagellin Phase 1 flagellin 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
NTF2-like Homeodomain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Thermostable phytase (3-phytase) Thermostable phytase (3-phytase) 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Histidine-containing phosphotransfer domain, HPT domain EspE N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
CheC-like Surface presentation of antigens (SPOA) 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
PurS-like FGAM synthase PurL, linker domain 11
ARM repeat ARM repeat 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
PTS system IIB component-like PTS system IIB component-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Class II aaRS and biotin synthetases GAD domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
Lysozyme-like PGBD-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Thioredoxin-like Thioredoxin-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
PIN domain-like Ribonuclease H-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
TSP type-3 repeat OmpA-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
GAF domain-like Phosphohistidine domain 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
PIN domain-like DNA/RNA polymerases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Nucleic acid-binding proteins BRCT domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
cAMP-binding domain-like cAMP-binding domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Nucleic acid-binding proteins PheT/TilS domain 11
Ferritin-like Calcium ATPase, transduction domain A 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Nudix Thiamin phosphate synthase 11
Trigger factor ribosome-binding domain FKBP-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Periplasmic binding protein-like II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
PurS-like Class I glutamine amidotransferase-like 11
Nqo5-like HydB/Nqo4-like 11
Phoshotransferase/anion transport protein HPr-like 11
EPT/RTPC-like EPT/RTPC-like 11
TerB-like Chaperone J-domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
Single hybrid motif Single hybrid motif 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
YbaK/ProRS associated domain HD-domain/PDEase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Rudiment single hybrid motif ClpP/crotonase 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Formyltransferase FMT C-terminal domain-like 11
vWA-like vWA-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Globin-like PYP-like sensor domain (PAS domain) 11
Ribonuclease H-like HRDC-like 11
WD40 repeat-like MetI-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
HRDC-like HRDC-like 11
EAL domain-like CBS-domain pair 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Translation proteins Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Nucleotidylyl transferase Riboflavin kinase-like 11
DNA methylase specificity domain DNA methylase specificity domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
RuvA domain 2-like BRCT domain 11
Nudix "Winged helix" DNA-binding domain 11
Ferritin-like Ferritin-like 11
Carbamate kinase-like ACT-like 11
C-terminal effector domain of the bipartite response regulators PYP-like sensor domain (PAS domain) 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
FAD/NAD(P)-binding domain NAD(P)-linked oxidoreductase 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
HAMP domain-like EAL domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Metalloproteases ("zincins"), catalytic domain Galactose-binding domain-like 11
EspE N-terminal domain-like Homodimeric domain of signal transducing histidine kinase 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Starch-binding domain-like E set domains 11
MFS general substrate transporter MFS general substrate transporter 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Bacterial muramidases Lysozyme-like 11
PUA domain-like alpha/beta knot 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Caspase-like 11
EspE N-terminal domain-like CheW-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Galactose mutarotase-like E set domains 11
Rubredoxin-like Rubredoxin-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Radical SAM enzymes RuvA domain 2-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Globin-like Nucleotide cyclase 11
Ribosomal protein L6 Ribosomal protein L6 11
CarD-like TRCF domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PheT/TilS domain Putative DNA-binding domain 11
FMN-binding split barrel 2Fe-2S ferredoxin-like 11
Translation proteins ThrRS/AlaRS common domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
CRISPR-associated protein CRISPR-associated protein 11
CheY-like CheC-like 11
HAD-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Histidine-containing phosphotransfer domain, HPT domain HD-domain/PDEase-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
EspE N-terminal domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PurS-like PurM C-terminal domain-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Ribokinase-like Nucleotidylyl transferase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11

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