SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Anaeromyxobacter dehalogenans 2CP-1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

814 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 8035
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 3711
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 285
Actin-like ATPase domain Actin-like ATPase domain 279
CheY-like Homeodomain-like 274
CheY-like P-loop containing nucleoside triphosphate hydrolases 274
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2511
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2215
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2114
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 211
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1915
TPR-like TPR-like 1813
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1711
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 176
Homodimeric domain of signal transducing histidine kinase CheY-like 1714
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 164
GAF domain-like Homodimeric domain of signal transducing histidine kinase 159
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 144
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 123
P-loop containing nucleoside triphosphate hydrolases Translation proteins 126
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 121
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 126
GroES-like NAD(P)-binding Rossmann-fold domains 122
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 118
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 112
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 105
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 105
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 105
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 105
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 107
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 105
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 105
Multiheme cytochromes Multiheme cytochromes 95
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 96
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 94
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 95
CheY-like C-terminal effector domain of the bipartite response regulators 81
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 83
PYP-like sensor domain (PAS domain) CheY-like 88
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 74
GAF domain-like PYP-like sensor domain (PAS domain) 77
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 75
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 71
Sigma2 domain of RNA polymerase sigma factors NTF2-like 71
Thiolase-like Thiolase-like 73
CheY-like Methylesterase CheB, C-terminal domain 73
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 73
Translation proteins EF-G C-terminal domain-like 73
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 75
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 75
PreATP-grasp domain Rudiment single hybrid motif 75
Histidine-containing phosphotransfer domain, HPT domain CheW-like 75
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 73
EF-G C-terminal domain-like EF-G C-terminal domain-like 62
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 64
Trypsin-like serine proteases PDZ domain-like 63
FKBP-like Triger factor/SurA peptide-binding domain-like 65
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 64
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 65
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 53
ACT-like ACT-like 53
Alpha-L RNA-binding motif Pseudouridine synthase 52
Homodimeric domain of signal transducing histidine kinase CheW-like 54
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
GAF domain-like GAF domain-like 54
CheY-like Nucleotide cyclase 54
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 54
PurM N-terminal domain-like PurM C-terminal domain-like 52
ClpP/crotonase ClpP/crotonase 53
Nucleic acid-binding proteins Nucleic acid-binding proteins 55
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 41
(Trans)glycosidases Glycosyl hydrolase domain 43
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 43
PilZ domain-like CheY-like 42
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 44
CheY-like CheY-like 44
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 42
Phospholipase D/nuclease Phospholipase D/nuclease 42
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Chaperone J-domain TPR-like 43
GAF domain-like CheY-like 44
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 43
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 44
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 41
Thioredoxin-like GST C-terminal domain-like 41
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 41
P-loop containing nucleoside triphosphate hydrolases MOP-like 41
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 41
HAD-like Calcium ATPase, transmembrane domain M 43
Calcium ATPase, transduction domain A HAD-like 43
Translation proteins Ribosomal protein S5 domain 2-like 41
PDZ domain-like PDZ domain-like 42
SMAD/FHA domain SMAD/FHA domain 32
PYP-like sensor domain (PAS domain) Homeodomain-like 33
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 33
Lysozyme-like beta-lactamase/transpeptidase-like 33
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
Homeodomain-like Homeodomain-like 32
CheY-like TPR-like 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 31
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 31
Chaperone J-domain EspE N-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Protein kinase-like (PK-like) TPR-like 32
NAD(P)-binding Rossmann-fold domains ACT-like 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
GAF domain-like Nucleotide cyclase 33
PreATP-grasp domain PreATP-grasp domain 32
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 33
DPP6 N-terminal domain-like alpha/beta-Hydrolases 31
SMAD/FHA domain Nucleotide cyclase 31
Cupredoxins Cupredoxins 33
ParB/Sulfiredoxin KorB DNA-binding domain-like 31
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 31
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 32
Glutathione synthetase ATP-binding domain-like Single hybrid motif 33
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 31
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 31
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
PLP-binding barrel Alanine racemase C-terminal domain-like 32
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 33
PKD domain Pectin lyase-like 33
PreATP-grasp domain Single hybrid motif 33
Cytochrome c Cytochrome c 33
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
EspE N-terminal domain-like TPR-like 32
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Rudiment single hybrid motif Single hybrid motif 33
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 32
Single hybrid motif CoA-dependent acyltransferases 33
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 32
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 32
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
DinB/YfiT-like putative metalloenzymes C-type lectin-like 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 21
SMAD/FHA domain Homeodomain-like 22
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 21
4Fe-4S ferredoxins Nucleotide-binding domain 22
alpha-helical ferredoxin Nucleotide-binding domain 22
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 22
P-loop containing nucleoside triphosphate hydrolases TGS-like 21
Cupredoxins Cytochrome c 21
RmlC-like cupins Homeodomain-like 21
CheW-like CheY-like 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Histidine-containing phosphotransfer domain, HPT domain CheY-like 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
cAMP-binding domain-like CBS-domain pair 22
PDZ domain-like ClpP/crotonase 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
alpha/beta-Hydrolases alpha/beta-Hydrolases 21
HD-domain/PDEase-like Nucleotidyltransferase 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 21
GroEL equatorial domain-like GroEL-intermediate domain like 21
GAF domain-like Homeodomain-like 22
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 22
PreATP-grasp domain Methylglyoxal synthase-like 21
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Nucleotidyltransferase ACT-like 22
HlyD-like secretion proteins HlyD-like secretion proteins 21
Tropomyosin CheY-like 22
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
HMA, heavy metal-associated domain HAD-like 22
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 22
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 21
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 21
Ferritin-like Rubredoxin-like 21
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 22
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 21
LysM domain L,D-transpeptidase catalytic domain-like 21
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 21
GroEL-intermediate domain like GroEL apical domain-like 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
E set domains (Trans)glycosidases 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Translation proteins ThrRS/AlaRS common domain 22
GroEL equatorial domain-like GroEL apical domain-like 21
Clc chloride channel CBS-domain pair 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
LEA14-like LEA14-like 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
TSP type-3 repeat OmpA-like 22
PilZ domain-like Actin-like ATPase domain 22
PilZ domain-like Heat shock protein 70kD (HSP70), peptide-binding domain 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
TPR-like Lysozyme-like 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
Carboxypeptidase regulatory domain-like Porins 22
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 21
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 21
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
"Winged helix" DNA-binding domain PLP-dependent transferases 21
TPR-like Metalloproteases ("zincins"), catalytic domain 21
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 21
Cysteine proteinases TPR-like 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Zinc beta-ribbon DNA primase core 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 21
HD-domain/PDEase-like ACT-like 22
Thioredoxin-like Thioredoxin-like 22
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Aldolase post-HMGL domain-like 22
vWA-like Class I glutamine amidotransferase-like 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
PUA domain-like Ribosomal protein S5 domain 2-like 22
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
Nucleic acid-binding proteins RuvA domain 2-like 22
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
CheY-like EspE N-terminal domain-like 22
PUA domain-like alpha/beta knot 21
CheY-like Chaperone J-domain 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
TPR-like P-loop containing nucleoside triphosphate hydrolases 22
CheY-like HD-domain/PDEase-like 21
4Fe-4S ferredoxins FAD/NAD(P)-binding domain 22
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Zinc beta-ribbon Zinc beta-ribbon 11
Nucleotidylyl transferase tRNA-binding arm 11
CBS-domain pair ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Single hybrid motif ClpP/crotonase 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Sec-C motif Creatinase/aminopeptidase 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Carbamate kinase-like PUA domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Metalloproteases ("zincins"), catalytic domain Integrin alpha N-terminal domain 11
"Winged helix" DNA-binding domain GAF domain-like 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Nucleotidyltransferase TGS-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Putative DNA-binding domain TPR-like 11
Ferredoxin reductase-like, C-terminal NADP-linked domain Ferritin-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) TPR-like 11
HAMP domain-like Nucleotide cyclase 11
MoaD/ThiS Molybdopterin synthase subunit MoaE 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
CBS-domain pair CBS-domain pair 11
Ribbon-helix-helix ACT-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
DNA polymerase beta, N-terminal domain-like Sec63 N-terminal domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PIN domain-like Ribonuclease H-like 11
Periplasmic binding protein-like II ACT-like 11
YajQ-like YajQ-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Galactose mutarotase-like Galactose mutarotase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
HIT-like HIT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
ACT-like Formyltransferase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
HAMP domain-like PP2C-like 11
DPP6 N-terminal domain-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
Homeodomain-like TATA-box binding protein-like 11
Thiolase-like FabD/lysophospholipase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
DeoB insert domain-like Alkaline phosphatase-like 11
Six-hairpin glycosidases PilZ domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
WD40 repeat-like Quinoprotein alcohol dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
S-adenosyl-L-methionine-dependent methyltransferases Tropomyosin 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Lysozyme-like LysM domain 11
Chaperone J-domain lambda repressor-like DNA-binding domains 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Aldolase Single hybrid motif 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Class II aaRS and biotin synthetases Nudix 11
Protein kinase-like (PK-like) WD40 repeat-like 11
Carbohydrate phosphatase ADP-ribosylglycohydrolase 11
Ribosomal protein L6 Ribosomal protein L6 11
Nucleic acid-binding proteins BRCT domain 11
Serine metabolism enzymes domain ACT-like 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
Origin of replication-binding domain, RBD-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
CBS-domain pair Nucleotidyltransferase substrate binding subunit/domain 11
Calcium-dependent phosphotriesterase WD40 repeat-like 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
alpha/beta-Hydrolases TPR-like 11
FMN-binding split barrel Acyl-CoA N-acyltransferases (Nat) 11
LysM domain Duplicated hybrid motif 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Thiolase-like ACP-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Tropomyosin ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Rhomboid-like TPR-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
PHP domain-like AF1531-like 11
Globin-like Homodimeric domain of signal transducing histidine kinase 11
S13-like H2TH domain Ribosomal protein S5 domain 2-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
CBS-domain pair Homodimeric domain of signal transducing histidine kinase 11
UDP-Glycosyltransferase/glycogen phosphorylase Acyl-CoA N-acyltransferases (Nat) 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Pentapeptide repeat-like Hedgehog/intein (Hint) domain 11
Immunoglobulin Pectin lyase-like 11
L30e-like alpha/beta knot 11
Riboflavin synthase domain-like Nucleotide-binding domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Single hybrid motif Single hybrid motif 11
Cytochrome c Multiheme cytochromes 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Multiheme cytochromes Fibronectin type III 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Trigger factor ribosome-binding domain FKBP-like 11
SMAD/FHA domain GAF domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
ARM repeat ARM repeat 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Six-hairpin glycosidases Nucleotide-diphospho-sugar transferases 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribonuclease H-like DNA/RNA polymerases 11
RNase III domain-like dsRNA-binding domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
GlnB-like CBS-domain pair 11
EspE N-terminal domain-like Pili subunits 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
alpha/beta-Hydrolases NAD(P)-binding Rossmann-fold domains 11
cAMP-binding domain-like P-loop containing nucleoside triphosphate hydrolases 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
DPP6 N-terminal domain-like Tricorn protease N-terminal domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Oxidoreductase molybdopterin-binding domain E set domains 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
TSP type-3 repeat TSP type-3 repeat 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
CBS-domain pair Nucleotidyltransferase 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
PreATP-grasp domain ClpP/crotonase 11
alpha/beta-Hydrolases Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
FMN-binding split barrel GAF domain-like 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Composite domain of metallo-dependent hydrolases 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
RuvA domain 2-like JAB1/MPN domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Ferredoxin reductase-like, C-terminal NADP-linked domain alpha-helical ferredoxin 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
cAMP-binding domain-like ThrRS/AlaRS common domain 11
Phosphotyrosine protein phosphatases I Acyl-CoA N-acyltransferases (Nat) 11
Periplasmic binding protein-like II Radical SAM enzymes 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
HMA, heavy metal-associated domain Cation efflux protein transmembrane domain-like 11
Xylose isomerase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Homeodomain-like 11
Carboxypeptidase regulatory domain-like Starch-binding domain-like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
TPR-like ARM repeat 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Di-copper centre-containing domain vWA-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Nucleic acid-binding proteins beta-lactamase/transpeptidase-like 11
PKD domain PKD domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Tropomyosin 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Nucleotidylyl transferase GatB/YqeY motif 11
Carboxypeptidase regulatory domain-like Carboxypeptidase regulatory domain-like 11
DPP6 N-terminal domain-like Metallo-dependent hydrolases 11
TGS-like ThrRS/AlaRS common domain 11
Carboxypeptidase regulatory domain-like PDZ domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
PIN domain-like DNA/RNA polymerases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Rudiment single hybrid motif ClpP/crotonase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Calcium-dependent phosphotriesterase Formin homology 2 domain (FH2 domain) 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Ribosomal protein L25-like GatB/YqeY motif 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Putative DNA-binding domain Periplasmic binding protein-like II 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Ferritin-like Ferritin-like 11
Pseudouridine synthase PUA domain-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
E set domains Glycosyl hydrolase domain 11
Homeodomain-like DNA-glycosylase 11
Homodimeric domain of signal transducing histidine kinase P-loop containing nucleoside triphosphate hydrolases 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
tRNA-guanine transglycosylase S-adenosyl-L-methionine-dependent methyltransferases 11
CBS-domain pair MgtE membrane domain-like 11
Cupredoxins Fibronectin type III 11
PheT/TilS domain Putative DNA-binding domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
FabD/lysophospholipase-like ACP-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases Periplasmic binding protein-like II 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain Cobalamin (vitamin B12)-binding domain 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Ferredoxin reductase-like, C-terminal NADP-linked domain Nucleotide-binding domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Riboflavin synthase domain-like alpha-helical ferredoxin 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
HAMP domain-like GAF domain-like 11
ACP-like ACP-like 11
MalF N-terminal region-like MetI-like 11
Nucleic acid-binding proteins HD-domain/PDEase-like 11
Rudiment single hybrid motif Aldolase 11
Translation proteins "Winged helix" DNA-binding domain 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
TPR-like Carboxypeptidase regulatory domain-like 11
Protein kinase-like (PK-like) ARM repeat 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Immunoglobulin PKD domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Nitrous oxide reductase, N-terminal domain 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nqo5-like HydB/Nqo4-like 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
Sec63 N-terminal domain-like PHP domain-like 11
cAMP-binding domain-like Nucleotidyltransferase substrate binding subunit/domain 11
alpha-helical ferredoxin Ferritin-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Calcium-dependent phosphotriesterase Quinoprotein alcohol dehydrogenase-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Macro domain-like Zn-dependent exopeptidases 11
LysM domain LysM domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Methylesterase CheB, C-terminal domain Tropomyosin 11
Starch-binding domain-like PDZ domain-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Nucleotidylyl transferase Riboflavin kinase-like 11
MFS general substrate transporter TPR-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
MetI-like MetI-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
TolA/TonB C-terminal domain Porins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
CheY-binding domain of CheA CheW-like 11
Tropomyosin PYP-like sensor domain (PAS domain) 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
NAD(P)-binding Rossmann-fold domains Acetyl-CoA synthetase-like 11
PA domain Metalloproteases ("zincins"), catalytic domain 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
4Fe-4S ferredoxins Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor 11
TerB-like TerB-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
Acetyl-CoA synthetase-like Glycerol-3-phosphate (1)-acyltransferase 11
Riboflavin synthase domain-like Ferritin-like 11
Actin-like ATPase domain Thiamin diphosphate-binding fold (THDP-binding) 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
HD-domain/PDEase-like TGS-like 11
Iron-dependent repressor protein, dimerization domain C-terminal domain of transcriptional repressors 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
Xylose isomerase-like NAD(P)-binding Rossmann-fold domains 11
RCC1/BLIP-II RCC1/BLIP-II 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
Starch-binding domain-like Starch-binding domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase S13-like H2TH domain 11
TGS-like Class II aaRS and biotin synthetases 11
ISP domain ISP domain 11
Protein kinase-like (PK-like) Calcium-dependent phosphotriesterase 11
GroES-like GroES-like 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Protein kinase-like (PK-like) Quinoprotein alcohol dehydrogenase-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
HCP-like HCP-like 11
DmpA/ArgJ-like Carbamate kinase-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
Nucleotidyltransferase PHP domain-like 11
TATA-box binding protein-like DNA-glycosylase 11
Putative DNA-binding domain CheY-like 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Lysozyme-like Nucleic acid-binding proteins 11
E set domains Metalloproteases ("zincins"), catalytic domain 11
Sec63 N-terminal domain-like Nucleotidyltransferase 11
C-terminal effector domain of the bipartite response regulators alpha/beta-Hydrolases 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like BRCT domain 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
TPR-like TRAP-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
PrpR receptor domain-like Homeodomain-like 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Globin-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PK beta-barrel domain-like PK C-terminal domain-like 11
4Fe-4S ferredoxins Transmembrane di-heme cytochromes 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
JAB1/MPN domain Activating enzymes of the ubiquitin-like proteins 11
DNA-glycosylase Nudix 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
PreATP-grasp domain Aldolase 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like ACT-like 11
EspE N-terminal domain-like ARM repeat 11
GIY-YIG endonuclease RuvA domain 2-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Nucleotide-binding domain Nucleotide-binding domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
HAMP domain-like HD-domain/PDEase-like 11
NAD(P)-binding Rossmann-fold domains Glycerol-3-phosphate (1)-acyltransferase 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
ThrRS/AlaRS common domain P-loop containing nucleoside triphosphate hydrolases 11
TPR-like Periplasmic binding protein-like I 11
FliG FliG 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Rudiment single hybrid motif post-HMGL domain-like 11
Nucleotide-binding domain Ferritin-like 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
TolA/TonB C-terminal domain Carboxypeptidase regulatory domain-like 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Hsp33 domain HSP33 redox switch-like 11
Thioredoxin-like Six-hairpin glycosidases 11
Class II aaRS and biotin synthetases Translation proteins 11
Homodimeric domain of signal transducing histidine kinase Homeodomain-like 11
Formyltransferase FMT C-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
C-terminal effector domain of the bipartite response regulators TPR-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Tropomyosin Homodimeric domain of signal transducing histidine kinase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
cAMP-binding domain-like Nucleotidyltransferase 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
post-HMGL domain-like Single hybrid motif 11
YrdC/RibB RibA-like 11
Triger factor/SurA peptide-binding domain-like Thioredoxin-like 11
Putative DNA-binding domain Phoshotransferase/anion transport protein 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Nucleic acid-binding proteins GAD domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
YjeF N-terminal domain-like Ribokinase-like 11
ClpP/crotonase NfeD domain-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Triger factor/SurA peptide-binding domain-like Triger factor/SurA peptide-binding domain-like 11
Carboxypeptidase regulatory domain-like Multiheme cytochromes 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Translation proteins Translation proteins 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PKD domain DPP6 N-terminal domain-like 11
Protein kinase-like (PK-like) Adenine nucleotide alpha hydrolases-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Nudix Metallo-hydrolase/oxidoreductase 11
DPP6 N-terminal domain-like Composite domain of metallo-dependent hydrolases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
ADC-like 4Fe-4S ferredoxins 11
TGS-like ACT-like 11
Ribosome binding protein Y (YfiA homologue) Nucleic acid-binding proteins 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
2Fe-2S ferredoxin-like FAD/NAD(P)-binding domain 11
Ribonuclease H-like HRDC-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Nucleotide-diphospho-sugar transferases TPR-like 11
Acetyl-CoA synthetase-like Acyl-CoA N-acyltransferases (Nat) 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Acetyl-CoA synthetase-like ACP-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
MgtE N-terminal domain-like CBS-domain pair 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
DNA clamp DNA clamp 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
PreATP-grasp domain post-HMGL domain-like 11
Sensory domain-like HAMP domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Metallo-dependent hydrolases 11
HAMP domain-like CheY-like 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Methionine synthase domain Methionine synthase activation domain-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
(Trans)glycosidases (Trans)glycosidases 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
TGS-like Class II aaRS ABD-related 11
Regulatory protein AraC Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
4Fe-4S ferredoxins HydA/Nqo6-like 11
CarD-like TRCF domain-like 11
CheW-like CheW-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Malate synthase G Phosphoenolpyruvate/pyruvate domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Fibronectin type III Fibronectin type III 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
UDP-Glycosyltransferase/glycogen phosphorylase HAD-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II MetI-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11

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