SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Methylobacterium extorquens AM1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

745 domain combination pairs.
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Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6033
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3519
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 3430
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3425
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 321
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2820
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 2823
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 268
CheY-like C-terminal effector domain of the bipartite response regulators 263
Homodimeric domain of signal transducing histidine kinase CheY-like 2520
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 257
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 257
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 257
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 257
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 257
GroES-like NAD(P)-binding Rossmann-fold domains 194
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 195
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 183
PYP-like sensor domain (PAS domain) CheY-like 1714
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 163
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 151
Thioredoxin-like GST C-terminal domain-like 151
Nucleotide cyclase EAL domain-like 155
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 154
cAMP-binding domain-like "Winged helix" DNA-binding domain 132
Calcium ATPase, transduction domain A HAD-like 136
PYP-like sensor domain (PAS domain) Nucleotide cyclase 125
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 127
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 125
Actin-like ATPase domain Actin-like ATPase domain 123
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 124
HAD-like Calcium ATPase, transmembrane domain M 125
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 124
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 103
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 106
PYP-like sensor domain (PAS domain) EAL domain-like 93
GAF domain-like PYP-like sensor domain (PAS domain) 99
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 83
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 82
Homeodomain-like Homeodomain-like 83
CheY-like Histidine-containing phosphotransfer domain, HPT domain 87
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 83
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 82
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 85
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 87
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 86
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 74
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 77
Lysozyme-like beta-lactamase/transpeptidase-like 75
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 75
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 71
CheY-like P-loop containing nucleoside triphosphate hydrolases 72
CheY-like CheY-like 76
Thiolase-like Thiolase-like 72
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 72
beta-Roll beta-Roll 66
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 64
Trypsin-like serine proteases PDZ domain-like 63
"Winged helix" DNA-binding domain PLP-dependent transferases 61
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 63
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 61
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 62
Cytochrome c Cytochrome c 64
CheY-like Homeodomain-like 61
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 63
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
(Trans)glycosidases Glycosyl hydrolase domain 54
Cupredoxins Cupredoxins 54
GAF domain-like GAF domain-like 55
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
PurM N-terminal domain-like PurM C-terminal domain-like 52
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 51
E set domains (Trans)glycosidases 54
GAF domain-like CheY-like 55
PreATP-grasp domain Rudiment single hybrid motif 53
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 54
Class I glutamine amidotransferase-like Homeodomain-like 52
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 52
GAF domain-like Homodimeric domain of signal transducing histidine kinase 55
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 52
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 54
MoeA N-terminal region -like MoeA C-terminal domain-like 52
HMA, heavy metal-associated domain HAD-like 43
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 43
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 41
E set domains Glycosyl hydrolase domain 43
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 42
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 41
Ferritin-like HAD-like 41
Alpha-L RNA-binding motif Pseudouridine synthase 43
Formate dehydrogenase/DMSO reductase, domains 1-3 4Fe-4S ferredoxins 44
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 42
Ferritin-like Calcium ATPase, transmembrane domain M 41
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 43
Oxidoreductase molybdopterin-binding domain E set domains 42
PLP-binding barrel Alanine racemase C-terminal domain-like 42
ISP domain Bet v1-like 41
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 43
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 44
CheY-like HD-domain/PDEase-like 41
Resolvase-like Homeodomain-like 41
PDZ domain-like PDZ domain-like 41
PGBD-like L,D-transpeptidase catalytic domain-like 42
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
RuvA domain 2-like Nucleic acid-binding proteins 44
Folate-binding domain Aminomethyltransferase beta-barrel domain 43
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 43
Triger factor/SurA peptide-binding domain-like FKBP-like 44
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 41
Chaperone J-domain HSP40/DnaJ peptide-binding domain 43
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 41
Ferritin-like Calcium ATPase, transduction domain A 41
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 42
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
Translation proteins EF-G C-terminal domain-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 33
lambda repressor-like DNA-binding domains RmlC-like cupins 31
Nudix "Winged helix" DNA-binding domain 32
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 33
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 33
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 32
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 33
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 33
Galactose mutarotase-like E set domains 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
Cadherin-like Cadherin-like 33
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
NAD(P)-binding Rossmann-fold domains ACT-like 33
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
TPR-like TPR-like 32
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 32
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 31
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 33
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 31
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 32
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 33
(Trans)glycosidases (Trans)glycosidases 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
PK beta-barrel domain-like PK C-terminal domain-like 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
GAF domain-like Nucleotide cyclase 33
Phospholipase D/nuclease Phospholipase D/nuclease 33
ACT-like ACT-like 33
Lysozyme-like PGBD-like 31
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 31
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 33
ADC-like 4Fe-4S ferredoxins 33
Nqo1 middle domain-like Nqo1C-terminal domain-like 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 31
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 31
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Nucleic acid-binding proteins BRCT domain 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
RuvA domain 2-like BRCT domain 22
beta-Roll Concanavalin A-like lectins/glucanases 22
CheC-like Surface presentation of antigens (SPOA) 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
CheW-like CheY-like 22
Aldolase SIS domain 21
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
Metalloproteases ("zincins"), catalytic domain Concanavalin A-like lectins/glucanases 22
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 22
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
PYP-like sensor domain (PAS domain) lambda repressor-like DNA-binding domains 21
Formyltransferase FMT C-terminal domain-like 21
CheY-like Methylesterase CheB, C-terminal domain 22
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
ACP-like alpha/beta-Hydrolases 22
PLP-dependent transferases PLP-dependent transferases 22
GroEL equatorial domain-like GroEL-intermediate domain like 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 22
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 22
Galactose oxidase, central domain E set domains 22
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 22
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 22
L30e-like alpha/beta knot 21
CoA-dependent acyltransferases ACP-like 22
Nucleotidyltransferase ACT-like 22
Ribonuclease H-like DNA/RNA polymerases 22
Pectin lyase-like beta-Roll 21
Thioredoxin-like Nqo1 middle domain-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Galactose mutarotase-like Six-hairpin glycosidases 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 21
Globin-like Riboflavin synthase domain-like 21
ACP-like NAD(P)-binding Rossmann-fold domains 22
Thioredoxin-like Nqo1C-terminal domain-like 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
PIN domain-like DNA/RNA polymerases 22
YebC-like PFL-like glycyl radical enzymes 21
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 21
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
PIN domain-like Ribonuclease H-like 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
PreATP-grasp domain Single hybrid motif 22
CarD-like TRCF domain-like 22
Metalloproteases ("zincins"), catalytic domain beta-Roll 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
HCP-like HCP-like 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 22
FliG FliG 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
ACP-like Thiolase-like 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 21
HlyD-like secretion proteins HlyD-like secretion proteins 21
Single hybrid motif CoA-dependent acyltransferases 22
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
FAD/NAD(P)-binding domain Folate-binding domain 21
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Thiolase-like NAD(P)-binding Rossmann-fold domains 22
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 21
Urease, gamma-subunit Urease, beta-subunit 21
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 22
dUTPase-like dUTPase-like 21
GroEL-intermediate domain like GroEL apical domain-like 21
Acetyl-CoA synthetase-like ACP-like 22
Zinc beta-ribbon DNA primase core 21
CoA-dependent acyltransferases CoA-dependent acyltransferases 22
Bacterial muramidases Lysozyme-like 22
Cyclophilin-like PH0987 N-terminal domain-like 22
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Rudiment single hybrid motif Single hybrid motif 22
Hedgehog/intein (Hint) domain P-loop containing nucleoside triphosphate hydrolases 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Thioredoxin-like Nqo1 FMN-binding domain-like 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 22
2Fe-2S ferredoxin-like ADC-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
GroEL equatorial domain-like GroEL apical domain-like 21
P-loop containing nucleoside triphosphate hydrolases CarD-like 22
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Flavoproteins Riboflavin synthase domain-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
TGS-like ThrRS/AlaRS common domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
GAF domain-like HlyD-like secretion proteins 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
CalX-like CalX-like 11
ACP-like FAD/NAD(P)-binding domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Lysozyme-like Staphylococcal nuclease 11
CalX-like Metallo-dependent phosphatases 11
DNase I-like Metallo-dependent phosphatases 11
FabD/lysophospholipase-like ACP-like 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
Poly A polymerase C-terminal region-like ACT-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Nucleotidyltransferase Nucleotidyltransferase 11
FAD-linked oxidoreductase ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Nucleotide-binding domain Nucleotide-binding domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Macro domain-like Zn-dependent exopeptidases 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Translation proteins ThrRS/AlaRS common domain 11
DAK1/DegV-like DhaL-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Nucleic acid-binding proteins GAD domain-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
ACP-like PLP-dependent transferases 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
Ribonuclease H-like HRDC-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Nucleic acid-binding proteins dsRNA-binding domain-like 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
FabD/lysophospholipase-like Inosine monophosphate dehydrogenase (IMPDH) 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Subtilisin-like beta-Roll 11
RCC1/BLIP-II RCC1/BLIP-II 11
HD-domain/PDEase-like ACT-like 11
Ricin B-like lectins Ricin B-like lectins 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Phase 1 flagellin Phase 1 flagellin 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
PreATP-grasp domain PreATP-grasp domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
His-Me finger endonucleases DNA-binding domain 11
PHP domain-like AF1531-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Homing endonucleases P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Ferritin-like MFS general substrate transporter 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, catalytic domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases GroES-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
MetI-like MetI-like 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
PGBD-like Trypsin-like serine proteases 11
WD40 repeat-like Cytochrome c 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
TGS-like ACT-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Soluble quinoprotein glucose dehydrogenase Galactose-binding domain-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
PreATP-grasp domain Cyclophilin-like 11
CheY-like Nucleotide cyclase 11
ISP domain Cytochrome P450 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Cupredoxins Cytochrome c 11
PilZ domain-like PilZ domain-like 11
Periplasmic binding protein-like II ACT-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
YWTD domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
E set domains Putative isomerase YbhE 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
beta-lactamase/transpeptidase-like Staphylococcal nuclease 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Clc chloride channel CBS-domain pair 11
Periplasmic binding protein-like II NosL/MerB-like 11
HRDC-like HRDC-like 11
Hedgehog/intein (Hint) domain Homing endonucleases 11
alpha/beta-Hydrolases PLP-dependent transferases 11
UDP-Glycosyltransferase/glycogen phosphorylase HAD-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
YWTD domain DNase I-like 11
EspE N-terminal domain-like Nucleotide-diphospho-sugar transferases 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Serine metabolism enzymes domain ACT-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
PUA domain-like alpha/beta knot 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
DNA-glycosylase Nudix 11
PRTase-like Acyl-CoA N-acyltransferases (Nat) 11
Metallo-dependent phosphatases beta-Roll 11
DNA clamp DNA clamp 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
YWTD domain Metallo-dependent phosphatases 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase S-adenosyl-L-methionine-dependent methyltransferases 11
CalX-like beta-Roll 11
PreATP-grasp domain Methylglyoxal synthase-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
TGS-like Class II aaRS ABD-related 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PDZ domain-like ClpP/crotonase 11
Hsp33 domain HSP33 redox switch-like 11
Glycoside hydrolase/deacetylase UraD-Like 11
Nucleotide cyclase Nucleotide cyclase 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Ricin B-like lectins E set domains 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Class II aaRS and biotin synthetases Translation proteins 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Galactose-binding domain-like beta-Roll 11
Nucleotidyltransferase TGS-like 11
ACP-like Trimeric LpxA-like enzymes 11
Tex N-terminal region-like RuvA domain 2-like 11
Cyclophilin-like Single hybrid motif 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like Phosphohistidine domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
PheT/TilS domain Putative DNA-binding domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Thioredoxin-like TPR-like 11
Cadherin-like RCC1/BLIP-II 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
ACP-like ACP-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Photosystem II reaction centre subunit H, transmembrane region PRC-barrel domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
YlxR-like L30e-like 11
L domain-like Protein kinase-like (PK-like) 11
"Winged helix" DNA-binding domain HRDC-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, peptide-binding domain 11
Galactose oxidase, central domain Putative isomerase YbhE 11
Ribonuclease H-like Nucleic acid-binding proteins 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain beta-Roll 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
CheW-like CheW-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
Rudiment single hybrid motif Cyclophilin-like 11
YrdC/RibB RibA-like 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Single hybrid motif TK C-terminal domain-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Apolipoprotein A-I Apolipoprotein A-I 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Translation proteins PRC-barrel domain 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
Carbamate kinase-like ACT-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
PH0987 N-terminal domain-like Single hybrid motif 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
RuvA domain 2-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Dehydroquinate synthase-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
GAF domain-like lambda repressor-like DNA-binding domains 11
Thiolase-like FabD/lysophospholipase-like 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
TGS-like Class II aaRS and biotin synthetases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
FabD/lysophospholipase-like GroES-like 11
beta-lactamase/transpeptidase-like Sporulation related repeat 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
FabD/lysophospholipase-like S-adenosyl-L-methionine-dependent methyltransferases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
PPK N-terminal domain-like PHP14-like 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Rubredoxin-like FAD/NAD(P)-binding domain 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Cyclophilin-like Cyclophilin-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
RmlC-like cupins Homeodomain-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Ribonuclease H-like RuvA domain 2-like 11
"Winged helix" DNA-binding domain GAF domain-like 11
CalX-like YWTD domain 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
DNase I-like 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
RuvA domain 2-like JAB1/MPN domain 11
dsRNA-binding domain-like dsRNA-binding domain-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Ribosome binding protein Y (YfiA homologue) Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Subtilisin-like Galactose-binding domain-like 11
ClpP/crotonase ClpP/crotonase 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Thiolase-like GroES-like 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
Translation proteins Translation proteins 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
CalX-like DNase I-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Trigger factor ribosome-binding domain FKBP-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
GroES-like GroES-like 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
DNase I-like beta-Roll 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
TATA-box binding protein-like DNA-glycosylase 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
GroES-like ACP-like 11
CalX-like 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
CheY-like Purine and uridine phosphorylases 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 11
PLP-dependent transferases FAD/NAD(P)-binding domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Radical SAM enzymes RuvA domain 2-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
HCP-like Ribonuclease H-like 11
beta-Barrel protease inhibitors beta-Barrel protease inhibitors 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Dihydropteroate synthetase-like Methionine synthase domain 11
TerB-like Chaperone J-domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
YWTD domain beta-Roll 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Carbamate kinase-like PUA domain-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
HAMP domain-like Nucleotide cyclase 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like EAL domain-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
cAMP-binding domain-like FAD/NAD(P)-binding domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
alpha/beta-Hydrolases FAD/NAD(P)-binding domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Ricin B-like lectins Galactose oxidase, central domain 11
HD-domain/PDEase-like TGS-like 11
PHP14-like Phospholipase D/nuclease 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
HAMP domain-like EAL domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase Inosine monophosphate dehydrogenase (IMPDH) 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Methyl-accepting chemotaxis protein (MCP) signaling domain PilZ domain-like 11

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