SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Aeromonas salmonicida subsp. salmonicida A449

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

766 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 521
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3316
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2616
Actin-like ATPase domain Actin-like ATPase domain 196
CheY-like C-terminal effector domain of the bipartite response regulators 171
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 162
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 121
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 125
Homeodomain-like Homeodomain-like 113
PYP-like sensor domain (PAS domain) Nucleotide cyclase 118
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 107
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 105
Nucleotide cyclase EAL domain-like 105
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 101
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 108
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 93
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 93
(Trans)glycosidases Glycosyl hydrolase domain 85
Thioredoxin-like GST C-terminal domain-like 81
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 88
P-loop containing nucleoside triphosphate hydrolases Translation proteins 87
Homodimeric domain of signal transducing histidine kinase CheY-like 88
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 87
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 84
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 87
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 83
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 85
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 84
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 88
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 73
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
ACT-like ACT-like 74
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 76
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 73
Thiolase-like Thiolase-like 71
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 76
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 73
Regulatory protein AraC Homeodomain-like 62
Homeodomain-like Ribonuclease H-like 61
E set domains (Trans)glycosidases 64
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
CheY-like Histidine-containing phosphotransfer domain, HPT domain 66
P-loop containing nucleoside triphosphate hydrolases MOP-like 61
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 63
CheY-like P-loop containing nucleoside triphosphate hydrolases 63
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 54
OMPA-like OmpA-like 51
Calcium ATPase, transduction domain A HAD-like 54
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 51
HAD-like Calcium ATPase, transmembrane domain M 54
CBS-domain pair FAD-binding/transporter-associated domain-like 51
PreATP-grasp domain Rudiment single hybrid motif 52
PurM N-terminal domain-like PurM C-terminal domain-like 52
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 53
TrkA C-terminal domain-like TrkA C-terminal domain-like 52
Alpha-L RNA-binding motif Pseudouridine synthase 52
CheY-like Homeodomain-like 52
PLP-binding barrel Alanine racemase C-terminal domain-like 52
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 52
CoA-dependent acyltransferases CoA-dependent acyltransferases 55
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 55
GroES-like NAD(P)-binding Rossmann-fold domains 52
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 41
Phospholipase D/nuclease Phospholipase D/nuclease 43
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 44
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
PYP-like sensor domain (PAS domain) EAL domain-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
CheW-like CheY-like 42
H-NS histone-like proteins H-NS histone-like proteins 42
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 43
Nucleic acid-binding proteins Nucleic acid-binding proteins 43
Lysozyme-like beta-lactamase/transpeptidase-like 43
CheY-like PYP-like sensor domain (PAS domain) 44
MetI-like MetI-like 41
CheY-like CheY-like 44
CheY-like HD-domain/PDEase-like 42
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 42
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
GAF domain-like Nucleotide cyclase 44
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 41
Cytochrome c Cytochrome c 43
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 43
E set domains Glycosyl hydrolase domain 43
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 31
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 32
Periplasmic binding protein-like II Nucleotide cyclase 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 32
Nucleic acid-binding proteins RuvA domain 2-like 33
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Periplasmic binding protein-like II Lysozyme-like 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
TPR-like TPR-like 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
CoA-dependent acyltransferases ACP-like 33
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
Carbamate kinase-like ACT-like 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
HD-domain/PDEase-like ACT-like 32
Sensory domain-like Nucleotide cyclase 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
Homeodomain-like Probable bacterial effector-binding domain 32
HD-domain/PDEase-like Nucleotidyltransferase 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
Translation proteins EF-G C-terminal domain-like 33
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 33
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 33
FKBP-like Triger factor/SurA peptide-binding domain-like 33
Nucleotidyltransferase ACT-like 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 31
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
PK beta-barrel domain-like PK C-terminal domain-like 31
HMA, heavy metal-associated domain HAD-like 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 32
HlyD-like secretion proteins HlyD-like secretion proteins 31
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 31
"Winged helix" DNA-binding domain Chorismate lyase-like 31
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Histidine-containing phosphotransfer domain, HPT domain CheW-like 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
MgtE N-terminal domain-like MgtE membrane domain-like 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
MalF N-terminal region-like MetI-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
"Winged helix" DNA-binding domain PLP-dependent transferases 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
vWA-like beta-Roll 22
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 22
GAF domain-like EAL domain-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
GAF domain-like PYP-like sensor domain (PAS domain) 22
CBS-domain pair MgtE membrane domain-like 22
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
Origin of replication-binding domain, RBD-like P-loop containing nucleoside triphosphate hydrolases 22
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 21
E set domains E set domains 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 22
HD-domain/PDEase-like HD-domain/PDEase-like 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
ClpP/crotonase ClpP/crotonase 22
ACT-like P-loop containing nucleoside triphosphate hydrolases 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 21
GroES-like GroES-like 21
Carbohydrate-binding domain E set domains 21
beta-N-acetylhexosaminidase-like domain E set domains 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
HD-domain/PDEase-like TGS-like 21
Siroheme synthase middle domains-like Tetrapyrrole methylase 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
Trypsin-like serine proteases PDZ domain-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
HAMP domain-like CheY-like 22
Actin-like ATPase domain HD-domain/PDEase-like 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 21
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
Carbohydrate-binding domain (Trans)glycosidases 21
Acetyl-CoA synthetase-like ACP-like 22
Single hybrid motif CoA-dependent acyltransferases 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 21
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 22
Nucleotidylyl transferase Alpha-L RNA-binding motif 21
Homodimeric domain of signal transducing histidine kinase CheW-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
PDZ domain-like PDZ domain-like 22
Nqo5-like HydB/Nqo4-like 21
lambda repressor-like DNA-binding domains RmlC-like cupins 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 21
Formyltransferase FMT C-terminal domain-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HIT-like HIT-like 21
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Zinc beta-ribbon Zinc beta-ribbon 22
Nucleotidyltransferase TGS-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
HPr-like Phoshotransferase/anion transport protein 22
TGS-like ACT-like 21
FliG FliG 21
GAF domain-like HD-domain/PDEase-like 22
Sensory domain-like PYP-like sensor domain (PAS domain) 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Ribonuclease H-like DNA/RNA polymerases 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
PYP-like sensor domain (PAS domain) Homeodomain-like 22
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 22
"Winged helix" DNA-binding domain Actin-like ATPase domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Sensory domain-like Sporulation response regulatory protein Spo0B 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Resolvase-like Homeodomain-like 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
Carbohydrate binding domain Lysozyme-like 22
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 21
MoeA N-terminal region -like MoeA C-terminal domain-like 22
MgtE N-terminal domain-like CBS-domain pair 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
CheY-like Methylesterase CheB, C-terminal domain 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
alpha-helical ferredoxin Nucleotide-binding domain 22
Phoshotransferase/anion transport protein PTS system IIB component-like 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Class II aaRS and biotin synthetases GAD domain-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
LysM domain LysM domain 11
Galactose mutarotase-like Galactose mutarotase-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
2Fe-2S ferredoxin-like ADC-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
PreATP-grasp domain Single hybrid motif 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
PurS-like PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
RuvA domain 2-like RuvA domain 2-like 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
ACT-like Formyltransferase 11
Cytidine deaminase-like Cytidine deaminase-like 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
Homeodomain-like DNA-glycosylase 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
Putative DNA-binding domain Translation proteins 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Pseudouridine synthase PUA domain-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
L30e-like alpha/beta knot 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Formyltransferase NAD(P)-binding Rossmann-fold domains 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Thioredoxin-like TPR-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
PDZ domain-like ClpP/crotonase 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
MOSC N-terminal domain-like Riboflavin synthase domain-like 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
TGS-like Class II aaRS ABD-related 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
Ribokinase-like Nucleotidylyl transferase 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
TerB-like Chaperone J-domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
PIN domain-like Ribonuclease H-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
Pili subunits GspK insert domain-like 11
PPK N-terminal domain-like PHP14-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
cAMP-binding domain-like CBS-domain pair 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
CheC-like Surface presentation of antigens (SPOA) 11
YopH tyrosine phosphatase N-terminal domain (Phosphotyrosine protein) phosphatases II 11
RuvA domain 2-like JAB1/MPN domain 11
Homeodomain-like SIS domain 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Nucleotide-diphospho-sugar transferases 11
Acyl-CoA N-acyltransferases (Nat) Thioesterase/thiol ester dehydrase-isomerase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Translation proteins PRC-barrel domain 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
CheY-like CheC-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Translation proteins Translation proteins 11
NTF2-like Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Macro domain-like Zn-dependent exopeptidases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
4Fe-4S ferredoxins ADC-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Periplasmic binding protein-like II Hemerythrin-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
NTF2-like Sec-C motif 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
FKBP-like FKBP-like 11
UDP-Glycosyltransferase/glycogen phosphorylase Glycoside hydrolase/deacetylase 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Sm-like ribonucleoproteins cAMP-binding domain-like 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Nudix Nudix 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Phage tail proteins Phage fibre proteins 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
YjgF-like YjgF-like 11
EAL domain-like HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Starch-binding domain-like (Trans)glycosidases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
DeoB insert domain-like Alkaline phosphatase-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
(Trans)glycosidases PKD domain 11
Restriction endonuclease-like "Winged helix" DNA-binding domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
YrdC/RibB RibA-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
(Trans)glycosidases Chitinase insertion domain 11
(Trans)glycosidases Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
DNA-glycosylase Nudix 11
FAD-linked oxidoreductase ALDH-like 11
E set domains Six-hairpin glycosidases 11
Aldolase post-HMGL domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Ribosomal protein L6 Ribosomal protein L6 11
Nitrous oxide reductase, N-terminal domain Multiheme cytochromes 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
CarD-like TRCF domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
YgfB-like Sec-C motif 11
Trigger factor ribosome-binding domain FKBP-like 11
HCP-like HCP-like 11
Lysozyme-like LysM domain 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Lysozyme-like PKD domain 11
C-type lectin-like Aerolisin/ETX pore-forming domain 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
ABC transporter transmembrane region ABC transporter transmembrane region 11
Subtilisin-like Galactose-binding domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Zinc beta-ribbon DNA primase core 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Metalloproteases ("zincins"), catalytic domain Galactose-binding domain-like 11
Aldolase AFP III-like domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
PapD-like Periplasmic chaperone C-domain 11
Starch-binding domain-like Glycosyl hydrolase domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
PYP-like sensor domain (PAS domain) Hemerythrin-like 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nudix "Winged helix" DNA-binding domain 11
CalX-like beta-Roll 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Flavoproteins Rubredoxin-like 11
HAD-like Ribosomal protein S5 domain 2-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
alpha-helical ferredoxin alpha-helical ferredoxin 11
beta-Roll beta-Roll 11
PurS-like FGAM synthase PurL, linker domain 11
PHP14-like Phospholipase D/nuclease 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
HRDC-like HRDC-like 11
P-loop containing nucleoside triphosphate hydrolases UDP-Glycosyltransferase/glycogen phosphorylase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
PurS-like PurM C-terminal domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Ammonium transporter Ammonium transporter 11
RuvA domain 2-like BRCT domain 11
GspK insert domain-like GspK insert domain-like 11
GyrA/ParC C-terminal domain-like GyrA/ParC C-terminal domain-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
NAD(P)-binding Rossmann-fold domains Bet v1-like 11
DNase I-like CalX-like 11
Chitinase insertion domain Carbohydrate binding domain 11
YajQ-like YajQ-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
TGS-like ThrRS/AlaRS common domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
CalX-like vWA-like 11
DNA clamp DNA clamp 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Phase 1 flagellin Phase 1 flagellin 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Phage tail proteins Phage tail proteins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Barwin-like endoglucanases Sporulation related repeat 11
Periplasmic binding protein-like II ACT-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Globin-like Riboflavin synthase domain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Bacterial GAP domain ADP-ribosylation 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Ribokinase-like Thiamin phosphate synthase 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
TATA-box binding protein-like DNA-glycosylase 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Ribonuclease H-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Homeodomain-like TATA-box binding protein-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
gp5 N-terminal domain-like Phage fibre proteins 11
Starch-binding domain-like E set domains 11
Translation proteins ThrRS/AlaRS common domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Phage tail proteins gp5 N-terminal domain-like 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
ACT-like Homeodomain-like 11
Chorismate mutase II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
Periplasmic binding protein-like II GlnB-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Metallo-hydrolase/oxidoreductase Rubredoxin-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
GAF domain-like Homeodomain-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
PYP-like sensor domain (PAS domain) SpoIIaa-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
LysM domain Duplicated hybrid motif 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
(Trans)glycosidases Carbohydrate binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PIN domain-like DNA/RNA polymerases 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidylyl transferase tRNA-binding arm 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
L domain-like Protein kinase-like (PK-like) 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Acid proteases PDZ domain-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleic acid-binding proteins BRCT domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Bacterial muramidases Lysozyme-like 11
Nucleotide cyclase Hemerythrin-like 11
vWA-like TPR-like 11
"Winged helix" DNA-binding domain Ribokinase-like 11
RNase III domain-like dsRNA-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Zn-dependent exopeptidases LysM domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
PTS system IIB component-like PTS system IIB component-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Carbamate kinase-like PUA domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Tex N-terminal region-like Ribonuclease H-like 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Globin-like Nucleotide cyclase 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Leukocidin-like Ricin B-like lectins 11
GAF domain-like Phosphohistidine domain 11
HisI-like all-alpha NTP pyrophosphatases 11
Thioredoxin-like Thioredoxin-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Hsp33 domain HSP33 redox switch-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
PK beta-barrel domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Class II aaRS and biotin synthetases SufE/NifU 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Isochorismatase-like hydrolases ACP-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PheT/TilS domain Putative DNA-binding domain 11
PTS system fructose IIA component-like HPr-like 11
ACT-like PYP-like sensor domain (PAS domain) 11
MOSC N-terminal domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
PLP-dependent transferases PLP-dependent transferases 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
Tex N-terminal region-like RuvA domain 2-like 11
WD40 repeat-like MetI-like 11
CheY-like Nucleotide cyclase 11
UROD/MetE-like UROD/MetE-like 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Nucleic acid-binding proteins GAD domain-like 11
Single hybrid motif Single hybrid motif 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
PK beta-barrel domain-like Riboflavin synthase domain-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Dihydropteroate synthetase-like Methionine synthase domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
Translation proteins "Winged helix" DNA-binding domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Carbohydrate binding domain PKD domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
ALDH-like Dehydroquinate synthase-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
FMN-binding split barrel UbiD C-terminal domain-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase PP2C-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Glycosyl hydrolase domain PKD domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Class II aaRS and biotin synthetases Translation proteins 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
PurS-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
MOSC N-terminal domain-like 2Fe-2S ferredoxin-like 11
Multiheme cytochromes Cytochrome c 11
Periplasmic binding protein-like II CheY-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Nudix Acid phosphatase/Vanadium-dependent haloperoxidase 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
"Winged helix" DNA-binding domain MukF C-terminal domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Rudiment single hybrid motif Single hybrid motif 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
TPR-like Nucleotide cyclase 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Ribonuclease H-like HRDC-like 11
PreATP-grasp domain PreATP-grasp domain 11
GAF domain-like GAF domain-like 11
FMT C-terminal domain-like NAD(P)-binding Rossmann-fold domains 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
CalX-like CalX-like 11
TGS-like Class II aaRS and biotin synthetases 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]