SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Shewanella frigidimarina NCIMB 400

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

781 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 501
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3518
Nucleotide cyclase EAL domain-like 3018
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2813
PYP-like sensor domain (PAS domain) Nucleotide cyclase 2215
CheY-like C-terminal effector domain of the bipartite response regulators 201
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 175
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 154
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 154
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 154
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 156
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 157
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 154
PYP-like sensor domain (PAS domain) EAL domain-like 1412
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 143
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 126
Homodimeric domain of signal transducing histidine kinase CheY-like 119
Actin-like ATPase domain Actin-like ATPase domain 114
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1111
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 113
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 113
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 119
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 108
Thioredoxin-like GST C-terminal domain-like 101
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 108
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 103
GroES-like NAD(P)-binding Rossmann-fold domains 102
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 105
CheY-like PYP-like sensor domain (PAS domain) 98
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 96
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 91
ACT-like ACT-like 95
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
Thiolase-like Thiolase-like 82
DPP6 N-terminal domain-like alpha/beta-Hydrolases 83
Alpha-L RNA-binding motif Pseudouridine synthase 81
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
CheY-like Homeodomain-like 83
Cytochrome c Cytochrome c 74
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 73
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 73
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
CheY-like P-loop containing nucleoside triphosphate hydrolases 72
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 76
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 73
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
GAF domain-like Nucleotide cyclase 75
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 73
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 72
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 61
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
(Trans)glycosidases Glycosyl hydrolase domain 65
CheY-like Histidine-containing phosphotransfer domain, HPT domain 65
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 65
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 63
TPR-like TPR-like 64
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 52
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
CheY-like CheY-like 55
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 54
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 52
PurM N-terminal domain-like PurM C-terminal domain-like 52
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
PreATP-grasp domain Rudiment single hybrid motif 53
GAF domain-like EAL domain-like 53
HAD-like Calcium ATPase, transmembrane domain M 44
Calcium ATPase, transduction domain A HAD-like 44
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
HAMP domain-like Nucleotide cyclase 42
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 41
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 42
TPR-like Nucleotide cyclase 42
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 43
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
CheY-like Nucleotide cyclase 44
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 44
Translation proteins EF-G C-terminal domain-like 43
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
HD-domain/PDEase-like Nucleotidyltransferase 43
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 41
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
HD-domain/PDEase-like ACT-like 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Periplasmic binding protein-like II Nucleotide cyclase 33
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 31
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 33
Aconitase iron-sulfur domain LeuD/IlvD-like 33
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 33
HAMP domain-like CheY-like 32
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 32
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 32
CheW-like CheY-like 31
P-loop containing nucleoside triphosphate hydrolases TPR-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
E set domains (Trans)glycosidases 32
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Nucleic acid-binding proteins RuvA domain 2-like 33
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
Single hybrid motif CoA-dependent acyltransferases 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 31
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
HAMP domain-like EAL domain-like 31
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
PLP-binding barrel Alanine racemase C-terminal domain-like 31
GroES-like GroES-like 31
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
E set domains Glycosyl hydrolase domain 32
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 33
PDZ domain-like ClpP/crotonase 32
MetI-like MetI-like 31
ClpP/crotonase ClpP/crotonase 33
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 32
GAF domain-like PYP-like sensor domain (PAS domain) 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Nucleotidyltransferase ACT-like 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
2Fe-2S ferredoxin-like alpha-helical ferredoxin 31
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 32
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Resolvase-like Homeodomain-like 31
HMA, heavy metal-associated domain HAD-like 33
PA domain Zn-dependent exopeptidases 21
MgtE N-terminal domain-like CBS-domain pair 21
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 21
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 22
Zinc beta-ribbon Zinc beta-ribbon 22
LysM domain LysM domain 22
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Trypsin-like serine proteases PDZ domain-like 22
Rudiment single hybrid motif Single hybrid motif 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
HlyD-like secretion proteins HlyD-like secretion proteins 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
CheY-like EAL domain-like 22
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 21
Homeodomain-like Homeodomain-like 22
GAF domain-like HD-domain/PDEase-like 22
HD-domain/PDEase-like TGS-like 21
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 22
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 22
Multiheme cytochromes FAD/NAD(P)-binding domain 21
Quinoprotein alcohol dehydrogenase-like Nucleotide cyclase 22
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Multiheme cytochromes Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
TGS-like ACT-like 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
DNA methylase specificity domain DNA methylase specificity domain 21
Carbamate kinase-like PUA domain-like 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Ribonuclease H-like DNA/RNA polymerases 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Lamin A/C globular tail domain DNase I-like 22
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Porins Porins 22
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
Calcium-dependent phosphotriesterase Nucleotide cyclase 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
Translation proteins Ribosomal protein S5 domain 2-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Heme-dependent peroxidases Heme-dependent peroxidases 21
Single hybrid motif Single hybrid motif 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 22
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Carbamate kinase-like ACT-like 22
Quinoprotein alcohol dehydrogenase-like PYP-like sensor domain (PAS domain) 22
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
ACT-like NAD(P)-binding Rossmann-fold domains 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 21
PreATP-grasp domain Single hybrid motif 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
CheY-like HD-domain/PDEase-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 22
MgtE N-terminal domain-like MgtE membrane domain-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
GAF domain-like Homeodomain-like 21
Lysozyme-like LysM domain 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nucleotidyltransferase TGS-like 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Quinoprotein alcohol dehydrogenase-like EAL domain-like 22
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Galactose mutarotase-like E set domains 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Calcium-dependent phosphotriesterase EAL domain-like 22
CBS-domain pair MgtE membrane domain-like 21
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
PDZ domain-like PDZ domain-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
cAMP-binding domain-like CBS-domain pair 21
TSP type-3 repeat OmpA-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
ACT-like Formyltransferase 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
L30e-like alpha/beta knot 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Translation proteins ThrRS/AlaRS common domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
ClpP/crotonase Rudiment single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Pectin lyase-like Pectin lyase-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
H-NS histone-like proteins H-NS histone-like proteins 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
YWTD domain PYP-like sensor domain (PAS domain) 11
L domain-like Protein kinase-like (PK-like) 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Ribonuclease H-like HRDC-like 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
PurS-like Class I glutamine amidotransferase-like 11
ClpP/crotonase Glutathione synthetase ATP-binding domain-like 11
PP2C-like Protein kinase-like (PK-like) 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Putative DNA-binding domain Translation proteins 11
Nucleic acid-binding proteins BRCT domain 11
Thiolase-like FabD/lysophospholipase-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein L6 Ribosomal protein L6 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
GAF domain-like CBS-domain pair 11
EAL domain-like CBS-domain pair 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
Aldolase post-HMGL domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Homeodomain-like Ribonuclease H-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Ribokinase-like Nucleotidylyl transferase 11
SpoIIaa-like Adenine nucleotide alpha hydrolases-like 11
NHL repeat YWTD domain 11
Quinoprotein alcohol dehydrogenase-like Calcium-dependent phosphotriesterase 11
Phage tail proteins gp5 N-terminal domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Homeodomain-like Probable bacterial effector-binding domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
Globin-like Riboflavin synthase domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
TGS-like Class II aaRS and biotin synthetases 11
GroEL equatorial domain-like GroEL apical domain-like 11
RuvA domain 2-like BRCT domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
PheT/TilS domain Putative DNA-binding domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
Periplasmic binding protein-like II Aldolase 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
GAF domain-like Phosphohistidine domain 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Homeodomain-like SIS domain 11
HD-domain/PDEase-like CBS-domain pair 11
gp5 N-terminal domain-like Phage fibre proteins 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
FabD/lysophospholipase-like ACP-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Phosphotyrosine protein phosphatases I "Winged helix" DNA-binding domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
CheY-like Methylesterase CheB, C-terminal domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
ACP-like ACP-like 11
PA domain Subtilisin-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Sensory domain-like Nucleotide cyclase 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
vWA-like TPR-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Flavoproteins Rubredoxin-like 11
Tricorn protease N-terminal domain DPP6 N-terminal domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
PurS-like FGAM synthase PurL, linker domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
RNase III domain-like dsRNA-binding domain-like 11
OMPA-like OmpA-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
DPP6 N-terminal domain-like ClpP/crotonase 11
DNA-glycosylase Nudix 11
Clavaminate synthase-like Sec-C motif 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
PLP-dependent transferases PLP-dependent transferases 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
Bacterial muramidases Lysozyme-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
Pseudouridine synthase PUA domain-like 11
Chorismate mutase II Aldolase 11
CBS-domain pair Nucleotide cyclase 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Nucleic acid-binding proteins GAD domain-like 11
2Fe-2S ferredoxin-like ADC-like 11
YWTD domain EAL domain-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
PUA domain-like alpha/beta knot 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Barwin-like endoglucanases Sporulation related repeat 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
NHL repeat Nucleotide cyclase 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Fic-like "Winged helix" DNA-binding domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Phage tail proteins Phage fibre proteins 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
L9 N-domain-like Ribonuclease H-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
PIN domain-like Ribonuclease H-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Cupredoxins Pentapeptide repeat-like 11
YWTD domain Nucleotide cyclase 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Cupredoxins Cupredoxins 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
HisI-like all-alpha NTP pyrophosphatases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
ClpP/crotonase Single hybrid motif 11
TerB-like Chaperone J-domain 11
CarD-like TRCF domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
PKD domain PKD domain 11
Calcium-dependent phosphotriesterase PYP-like sensor domain (PAS domain) 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
PurS-like PurM C-terminal domain-like 11
Thiolase-like ACP-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Zn-dependent exopeptidases Fibronectin type III 11
Translation proteins Translation proteins 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Formyltransferase FMT C-terminal domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
PHP domain-like AF1531-like 11
Cupredoxins Cytochrome c 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Metalloproteases ("zincins"), catalytic domain PKD domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Methionine synthase domain Methionine synthase activation domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Subtilisin-like Cadherin-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
4Fe-4S ferredoxins Radical SAM enzymes 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
RmlC-like cupins RmlC-like cupins 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Metallo-hydrolase/oxidoreductase Rubredoxin-like 11
HRDC-like HRDC-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Class II aaRS and biotin synthetases Translation proteins 11
post-HMGL domain-like Single hybrid motif 11
Phage tail proteins Phage tail proteins 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Periplasmic binding protein-like II ACT-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
alpha/beta-Hydrolases TPR-like 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Cadherin-like Cadherin-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Tricorn protease N-terminal domain PDZ domain-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Sensory domain-like Sensory domain-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
NHL repeat PYP-like sensor domain (PAS domain) 11
ACT-like Homeodomain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
PurS-like PurM N-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
alpha/beta-Hydrolases P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
TPR-like TolA/TonB C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
2Fe-2S ferredoxin-like Nucleotide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Sec-C motif 11
Tricorn protease N-terminal domain ClpP/crotonase 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
RmlC-like cupins Homeodomain-like 11
Zinc beta-ribbon DNA primase core 11
CheC-like Surface presentation of antigens (SPOA) 11
NHL repeat EAL domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
RuvA domain 2-like RuvA domain 2-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Protease propeptides/inhibitors Subtilisin-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
ITPase-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
FliG FliG 11
HD-domain/PDEase-like Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
TATA-box binding protein-like DNA-glycosylase 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
TSP type-3 repeat alpha/beta-Hydrolases 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
WD40 repeat-like MetI-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
DPP6 N-terminal domain-like Metallo-dependent hydrolases 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
YrdC/RibB RibA-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Nucleotide-binding domain ADC-like 11
Metallo-hydrolase/oxidoreductase SCP-like 11
Hsp33 domain HSP33 redox switch-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Periplasmic binding protein-like II GlnB-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
DPP6 N-terminal domain-like PDZ domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Aldolase Single hybrid motif 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Translation proteins PRC-barrel domain 11
Thioredoxin-like Thioredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
Protease propeptides/inhibitors Galactose-binding domain-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Ribokinase-like Thiamin phosphate synthase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
RuvA domain 2-like JAB1/MPN domain 11
Flavoproteins Riboflavin synthase domain-like 11
DNase I-like PKD domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Cadherin-like vWA-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
FKBP-like FKBP-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
TGS-like ThrRS/AlaRS common domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases GAD domain-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
CheY-like CheC-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
FAD-linked oxidoreductase ALDH-like 11
Periplasmic binding protein-like II EAL domain-like 11
DNA clamp DNA clamp 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
C-terminal effector domain of the bipartite response regulators TPR-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
NTF2-like Sec-C motif 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Ribonuclease H-like RuvA domain 2-like 11
Kelch motif Kelch motif 11
E set domains E set domains 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
ACT-like Aldolase 11
YajQ-like YajQ-like 11
Lamin A/C globular tail domain PKD domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
HAD-like Ribosomal protein S5 domain 2-like 11
Mss4-like Peptide methionine sulfoxide reductase 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Lysozyme-like PGBD-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
"Winged helix" DNA-binding domain Ribokinase-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Ribokinase-like Ribokinase-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Homeodomain-like DNA-glycosylase 11
GspK insert domain-like GspK insert domain-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
Pili subunits GspK insert domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Periplasmic binding protein-like II Lysozyme-like 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Subtilisin-like Galactose-binding domain-like 11
TPR-like HCP-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Phase 1 flagellin Phase 1 flagellin 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
ALDH-like Dehydroquinate synthase-like 11
4Fe-4S ferredoxins ADC-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
GAF domain-like GAF domain-like 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
ACT-like PYP-like sensor domain (PAS domain) 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
PilZ domain-like PilZ domain-like 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
(Phosphotyrosine protein) phosphatases II NAD kinase/diacylglycerol kinase-like 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Dihydropteroate synthetase-like Methionine synthase domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Nucleotide-binding domain Formate dehydrogenase/DMSO reductase, domains 1-3 11
Zn-dependent exopeptidases LysM domain 11
Cytidine deaminase-like Cytidine deaminase-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
PIN domain-like DNA/RNA polymerases 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Chorismate mutase II ACT-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
TGS-like Class II aaRS ABD-related 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
OMPA-like TSP type-3 repeat 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Cadherin-like beta-Roll 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
Macro domain-like Zn-dependent exopeptidases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Homeodomain-like TATA-box binding protein-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
DPP6 N-terminal domain-like Composite domain of metallo-dependent hydrolases 11
Acid proteases Acid proteases 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
PA domain Cadherin-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
vWA-like beta-Roll 11
Cupredoxins Carboxypeptidase regulatory domain-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nucleotidylyl transferase tRNA-binding arm 11
ClpP/crotonase PreATP-grasp domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11

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