SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Dichelobacter nodosus VCS1703A

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

387 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 1511
Actin-like ATPase domain Actin-like ATPase domain 93
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
P-loop containing nucleoside triphosphate hydrolases Translation proteins 55
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 52
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 42
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 33
Translation proteins EF-G C-terminal domain-like 33
PreATP-grasp domain Rudiment single hybrid motif 31
Alpha-L RNA-binding motif Pseudouridine synthase 31
Thiolase-like Thiolase-like 31
Triger factor/SurA peptide-binding domain-like FKBP-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 32
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
lambda repressor-like DNA-binding domains LexA/Signal peptidase 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Thioredoxin-like GST C-terminal domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nucleotidyltransferase TGS-like 21
DsbC/DsbG N-terminal domain-like Thioredoxin-like 22
Single hybrid motif CoA-dependent acyltransferases 22
Subtilisin-like Galactose-binding domain-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Nucleotidyltransferase ACT-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
CheY-like P-loop containing nucleoside triphosphate hydrolases 21
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
PDZ domain-like PDZ domain-like 22
HD-domain/PDEase-like TGS-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
PDZ domain-like ClpP/crotonase 21
HD-domain/PDEase-like Nucleotidyltransferase 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
CheY-like Homeodomain-like 21
HD-domain/PDEase-like ACT-like 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
TGS-like ACT-like 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
PYP-like sensor domain (PAS domain) Nucleotide cyclase 11
PK beta-barrel domain-like PK C-terminal domain-like 11
FKBP-like FKBP-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Ribonuclease H-like RuvA domain 2-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
PYP-like sensor domain (PAS domain) EAL domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Ribosomal protein L6 Ribosomal protein L6 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
YrdC/RibB RibA-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
PHP14-like Phospholipase D/nuclease 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Peptide methionine sulfoxide reductase Mss4-like 11
TGS-like Class II aaRS ABD-related 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
MesJ substrate recognition domain-like PheT/TilS domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
GroES-like NAD(P)-binding Rossmann-fold domains 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Pseudouridine synthase PUA domain-like 11
PGBD-like Ankyrin repeat 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Nucleic acid-binding proteins BRCT domain 11
Trypsin-like serine proteases PDZ domain-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
PPK N-terminal domain-like PHP14-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
CheY-like C-terminal effector domain of the bipartite response regulators 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Translation proteins 11
ACT-like ACT-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
beta-Roll beta-Roll 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
DNA methylase specificity domain DNA methylase specificity domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
PheT/TilS domain Putative DNA-binding domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
CheW-like CheY-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
TGS-like Class II aaRS and biotin synthetases 11
Phoshotransferase/anion transport protein PTS system IIB component-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
RuvA domain 2-like RuvA domain 2-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Lysozyme-like PGBD-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Ribokinase-like Nucleotidylyl transferase 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like alpha/beta knot 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Trigger factor ribosome-binding domain FKBP-like 11
PGBD-like PGBD-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Translation proteins ThrRS/AlaRS common domain 11
PLP-dependent transferases PLP-dependent transferases 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
RNase III domain-like dsRNA-binding domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Ribonuclease H-like HRDC-like 11
Nucleotidylyl transferase Nudix 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
PIN domain-like DNA/RNA polymerases 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
CalX-like beta-Roll 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
TGS-like ThrRS/AlaRS common domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Nucleic acid-binding proteins Aldolase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Formyltransferase FMT C-terminal domain-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Translation proteins PRC-barrel domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
TPR-like TPR-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Ribonuclease H-like DNA/RNA polymerases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Nucleotide-diphospho-sugar transferases TPR-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 11
Tex N-terminal region-like RuvA domain 2-like 11
CBS-domain pair MgtE membrane domain-like 11
PLP-binding barrel Alanine racemase C-terminal domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
DNA clamp DNA clamp 11
Nucleic acid-binding proteins GAD domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Zinc beta-ribbon DNA primase core 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 11
PIN domain-like Ribonuclease H-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
CheY-like PLP-dependent transferases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Galactose mutarotase-like E set domains 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
DNA-glycosylase Nudix 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
MgtE N-terminal domain-like CBS-domain pair 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Carbamate kinase-like ACT-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Thioredoxin-like Thioredoxin-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
RuvA domain 2-like BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Macro domain-like Zn-dependent exopeptidases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
CheY-like Ornithine decarboxylase C-terminal domain 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
GroEL equatorial domain-like GroEL apical domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 11
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 11
Nucleotide cyclase EAL domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
GroEL-intermediate domain like GroEL apical domain-like 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Bacterial muramidases Lysozyme-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
L domain-like L domain-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
CarD-like TRCF domain-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
L30e-like alpha/beta knot 11
Tex N-terminal region-like Ribonuclease H-like 11
Translation proteins Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11

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