SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Paenibacillus sp. JDR-2

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

844 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homeodomain-like Homeodomain-like 16411
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 867
Regulatory protein AraC Homeodomain-like 866
CheY-like Homeodomain-like 845
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5015
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 504
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 441
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4314
CheY-like C-terminal effector domain of the bipartite response regulators 382
(Trans)glycosidases Galactose-binding domain-like 3619
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 294
(Trans)glycosidases Glycosyl hydrolase domain 2915
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 261
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 251
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 242
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 233
Actin-like ATPase domain Actin-like ATPase domain 215
Galactose-binding domain-like Galactose-binding domain-like 2119
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 185
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 185
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 185
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 189
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 175
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 178
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 153
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 1410
GroES-like NAD(P)-binding Rossmann-fold domains 131
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 121
Fibronectin type III Galactose-binding domain-like 1111
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 111
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 105
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 101
Arabinanase/levansucrase/invertase Galactose-binding domain-like 107
MalF N-terminal region-like MetI-like 102
RmlC-like cupins Homeodomain-like 95
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 94
P-loop containing nucleoside triphosphate hydrolases Translation proteins 97
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 93
"Winged helix" DNA-binding domain Actin-like ATPase domain 92
Fibronectin type III Fibronectin type III 99
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 86
Homeodomain-like "Helical backbone" metal receptor 85
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 83
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 87
Galactose-binding domain-like Pectin lyase-like 86
"Winged helix" DNA-binding domain Periplasmic binding protein-like I 81
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 71
Galactose-binding domain-like Six-hairpin glycosidases 76
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 72
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 76
Enolase N-terminal domain-like Enolase C-terminal domain-like 71
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 61
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 66
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 62
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 64
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 63
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 63
Glycoside hydrolase/deacetylase Galactose mutarotase-like 63
HAMP domain-like PYP-like sensor domain (PAS domain) 62
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 65
(Trans)glycosidases Fibronectin type III 66
P-loop containing nucleoside triphosphate hydrolases MOP-like 61
Class II aaRS and biotin synthetases Class II aaRS ABD-related 64
CheY-like Homodimeric domain of signal transducing histidine kinase 66
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 62
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 66
Translation proteins EF-G C-terminal domain-like 64
E set domains E set domains 55
HAD-like Calcium ATPase, transmembrane domain M 53
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 53
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 51
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 52
Carbohydrate-binding domain Type I dockerin domain 54
Nucleotide-diphospho-sugar transferases TPR-like 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 54
FKBP-like Triger factor/SurA peptide-binding domain-like 53
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
EF-G C-terminal domain-like EF-G C-terminal domain-like 53
Alpha-L RNA-binding motif Pseudouridine synthase 51
Nucleotide cyclase EAL domain-like 54
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 53
(Trans)glycosidases Class I glutamine amidotransferase-like 51
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 53
PYP-like sensor domain (PAS domain) Nucleotide cyclase 54
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 51
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
Copper amine oxidase, domain N Copper amine oxidase, domain N 53
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 51
Thiolase-like Thiolase-like 51
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 54
PreATP-grasp domain Rudiment single hybrid motif 52
"Winged helix" DNA-binding domain PLP-dependent transferases 51
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 55
Calcium ATPase, transduction domain A HAD-like 53
(Trans)glycosidases E set domains 44
Beta-D-glucan exohydrolase, C-terminal domain Carbohydrate-binding domain 43
"Winged helix" DNA-binding domain GAF domain-like 42
Phosphoenolpyruvate/pyruvate domain Phosphohistidine domain 42
(Trans)glycosidases Galactose mutarotase-like 42
Aspartate/glutamate racemase Aspartate/glutamate racemase 41
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
Homeodomain-like Probable bacterial effector-binding domain 41
LysM domain LysM domain 44
Glycosyl hydrolase domain E set domains 44
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 41
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 42
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 43
Galactose-binding domain-like Glycosyl hydrolase domain 44
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 43
Sigma2 domain of RNA polymerase sigma factors NTF2-like 41
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 42
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 42
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 41
(Trans)glycosidases Carbohydrate-binding domain 43
Lysozyme-like beta-lactamase/transpeptidase-like 43
ACT-like ACT-like 42
Concanavalin A-like lectins/glucanases Galactose-binding domain-like 44
C-terminal effector domain of the bipartite response regulators TPR-like 42
Trypsin-like serine proteases PDZ domain-like 42
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 33
HMA, heavy metal-associated domain HAD-like 31
PLP-binding barrel Alanine racemase C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 31
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 32
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 31
Galactose-binding domain-like Invasin/intimin cell-adhesion fragments 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 31
Nucleic acid-binding proteins RuvA domain 2-like 33
MetI-like MetI-like 32
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
CheY-like PYP-like sensor domain (PAS domain) 33
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 31
(Trans)glycosidases Type I dockerin domain 32
Peptide methionine sulfoxide reductase Mss4-like 31
TPR-like TPR-like 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Fibronectin type III E set domains 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
NAD(P)-binding Rossmann-fold domains ACT-like 33
Beta-D-glucan exohydrolase, C-terminal domain Type I dockerin domain 32
Phospholipase D/nuclease Phospholipase D/nuclease 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
GAF domain-like Homodimeric domain of signal transducing histidine kinase 33
Beta-D-glucan exohydrolase, C-terminal domain Galactose-binding domain-like 32
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 31
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 31
Galactose-binding domain-like Galactose mutarotase-like 31
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
Pectin lyase-like Fibronectin type III 33
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 33
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 32
(Trans)glycosidases Copper amine oxidase, domain N 33
Chondroitin AC/alginate lyase Galactose-binding domain-like 33
Translation proteins Ribosomal protein S5 domain 2-like 32
tRNA-binding arm Class II aaRS and biotin synthetases 31
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 33
GAF domain-like Nucleotide cyclase 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
GAF domain-like GAF domain-like 33
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 33
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 31
Nudix "Winged helix" DNA-binding domain 31
Oligoxyloglucan reducing end-specific cellobiohydrolase Fibronectin type III 33
Nucleotide-diphospho-sugar transferases RmlC-like cupins 31
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 32
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
Amine oxidase N-terminal region Amine oxidase N-terminal region 22
Oligoxyloglucan reducing end-specific cellobiohydrolase Anthrax protective antigen 22
Homeodomain-like SIS domain 21
TGS-like Class II aaRS ABD-related 21
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 21
Regulatory protein AraC "Helical backbone" metal receptor 22
beta-lactamase/transpeptidase-like Fibronectin type III 22
Fibronectin type III CBD9-like 22
Galactose-binding domain-like E set domains 22
Metallo-dependent phosphatases LysM domain 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Fibronectin type III Integrin alpha N-terminal domain 22
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
Galactose-binding domain-like Cadherin-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
Glycosyl hydrolase domain Fibronectin type III 22
Cadherin-like Type I dockerin domain 21
CBD9-like CBD9-like 22
Ricin B-like lectins Ricin B-like lectins 22
(Trans)glycosidases CBD9-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain LysM domain 22
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
TGS-like Class II aaRS and biotin synthetases 21
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
Cyclophilin-like PH0987 N-terminal domain-like 22
Periplasmic binding protein-like II ACT-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Carbamate kinase-like ACT-like 21
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 22
Fibronectin type III Anthrax protective antigen 22
Pectin lyase-like Pectin lyase-like 22
Bacillus cereus metalloprotein-like Bacillus cereus metalloprotein-like 21
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 22
Cadherin-like Invasin/intimin cell-adhesion fragments 22
PYP-like sensor domain (PAS domain) EAL domain-like 22
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 22
TGS-like ThrRS/AlaRS common domain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
CheY-like TPR-like 21
(Trans)glycosidases Cadherin-like 21
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 21
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 22
Pectin lyase-like CBD9-like 22
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 21
PYP-like sensor domain (PAS domain) lambda repressor-like DNA-binding domains 22
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 22
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 22
Single hybrid motif CoA-dependent acyltransferases 22
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
(Trans)glycosidases Actin-crosslinking proteins 22
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 21
Galactose-binding domain-like CBD9-like 22
CheC-like Surface presentation of antigens (SPOA) 22
Galactose-binding domain-like SGNH hydrolase 22
Lysozyme-like Fibronectin type III 22
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Ricin B-like lectins Pectin lyase-like 22
Amine oxidase N-terminal region Amine oxidase catalytic domain 22
ClpP/crotonase PGBD-like 21
Carbohydrate binding domain Carbohydrate binding domain 22
Purple acid phosphatase, N-terminal domain Metallo-dependent phosphatases 22
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 22
alpha-helical ferredoxin Nucleotide-binding domain 21
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 22
Aconitase iron-sulfur domain LeuD/IlvD-like 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 21
Cadherin-like Carbohydrate-binding domain 21
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 21
Fibronectin type III Invasin/intimin cell-adhesion fragments 22
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
GAF domain-like CheY-like 22
Nucleotidylyl transferase Ribosomal protein L25-like 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
ThrRS/AlaRS common domain Class II aaRS ABD-related 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
PKD domain PKD domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
(Trans)glycosidases Chitinase insertion domain 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
PK beta-barrel domain-like PK C-terminal domain-like 22
Beta-D-glucan exohydrolase, C-terminal domain Cadherin-like 21
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Ricin B-like lectins Galactose-binding domain-like 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Galactose-binding domain-like Type I dockerin domain 21
Pectin lyase-like Concanavalin A-like lectins/glucanases 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
lambda repressor-like DNA-binding domains RmlC-like cupins 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases TPR-like 21
(Trans)glycosidases Ricin B-like lectins 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 22
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 22
PDZ domain-like PGBD-like 21
"Winged helix" DNA-binding domain CBS-domain pair 22
Nucleotide-binding domain Nucleotide-binding domain 21
Galactose-binding domain-like Carbohydrate-binding domain 21
PDZ domain-like ClpP/crotonase 21
L30e-like alpha/beta knot 21
Glycosyl hydrolase domain Invasin/intimin cell-adhesion fragments 11
SMI1/KNR4-like ARM repeat 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Metallo-dependent phosphatases DNA ligase/mRNA capping enzyme, catalytic domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Invasin/intimin cell-adhesion fragments Concanavalin A-like lectins/glucanases 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
PIN domain-like Ribonuclease H-like 11
PIN domain-like DNA/RNA polymerases 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
RmlC-like cupins Glycosyl hydrolase domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Sialidases Sialidases 11
FMN-binding split barrel UbiD C-terminal domain-like 11
beta-N-acetylhexosaminidase-like domain Invasin/intimin cell-adhesion fragments 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
Purple acid phosphatase, N-terminal domain Carbohydrate-binding domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Lamin A/C globular tail domain Metallo-dependent phosphatases 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
FAD/NAD(P)-binding domain DsrEFH-like 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
4Fe-4S ferredoxins ARM repeat 11
CheY-like PP2C-like 11
Clavaminate synthase-like ARM repeat 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
YojJ-like RuvA domain 2-like 11
Class I glutamine amidotransferase-like E set domains 11
"Winged helix" DNA-binding domain HprK N-terminal domain-like 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
NEAT domain-like NEAT domain-like 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Carbamate kinase-like PUA domain-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Galactose-binding domain-like Anthrax protective antigen 11
PrpR receptor domain-like Homeodomain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
ACT-like Formyltransferase 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain DsrEFH-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
CheY-like Methylesterase CheB, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
FliG FliG 11
TPR-like (Trans)glycosidases 11
DNA-glycosylase Nudix 11
Concanavalin A-like lectins/glucanases Carbohydrate-binding domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Chondroitin AC/alginate lyase E set domains 11
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 11
Pectin lyase-like Carbohydrate-binding domain 11
"Winged helix" DNA-binding domain PTS system IIB component-like 11
LysM domain Barwin-like endoglucanases 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
ISP domain Bet v1-like 11
Zinc beta-ribbon DNA primase core 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Glycosyl hydrolase domain Putative glucosidase YicI, C-terminal domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Rudiment single hybrid motif Single hybrid motif 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Galactose-binding domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
AraD/HMP-PK domain-like AraD/HMP-PK domain-like 11
Nucleotide-diphospho-sugar transferases Protein prenylyltransferase 11
Nucleic acid-binding proteins PheT/TilS domain 11
EAL domain-like Sensory domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
CarD-like TRCF domain-like 11
Sensory domain-like HAMP domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Actin-crosslinking proteins PKD domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Glucose permease domain IIB Duplicated hybrid motif 11
Beta-D-glucan exohydrolase, C-terminal domain Anthrax protective antigen 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Putative DNA-binding domain Periplasmic binding protein-like II 11
Actin-like ATPase domain HD-domain/PDEase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
ADP-ribosylglycohydrolase Galactose-binding domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
LysM domain (Trans)glycosidases 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
Cadherin-like Cadherin-like 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Fibronectin type III SGNH hydrolase 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Carbohydrate-binding domain Amidase signature (AS) enzymes 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
Nucleic acid-binding proteins BRCT domain 11
Sensory domain-like Nucleotide cyclase 11
FAD/NAD(P)-binding domain SirA-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Cysteine proteinases Cysteine proteinases 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
HD-domain/PDEase-like ACT-like 11
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Invasin/intimin cell-adhesion fragments 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Translation proteins ThrRS/AlaRS common domain 11
Protein kinase-like (PK-like) Acyl-CoA N-acyltransferases (Nat) 11
Starch-binding domain-like Carboxypeptidase regulatory domain-like 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
UDP-Glycosyltransferase/glycogen phosphorylase TPR-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Copper amine oxidase, domain N Amine oxidase N-terminal region 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
vWA-like vWA-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
"Winged helix" DNA-binding domain DnaD domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
"Winged helix" DNA-binding domain HRDC-like 11
PK beta-barrel domain-like Phosphohistidine domain 11
(Trans)glycosidases Carbohydrate binding domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Translation proteins PRC-barrel domain 11
Lamin A/C globular tail domain Invasin/intimin cell-adhesion fragments 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
PHP14-like Phospholipase D/nuclease 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PTS-regulatory domain, PRD PTS system IIB component-like 11
Ribonuclease H-like DNA/RNA polymerases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Cupredoxins Cytochrome c 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Invasin/intimin cell-adhesion fragments PKD domain 11
E set domains Carbohydrate binding domain 11
Sensory domain-like Sporulation response regulatory protein Spo0B 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
HAMP domain-like CheY-like 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain SirA-like 11
Metallo-dependent phosphatases Carbohydrate-binding domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Rudiment single hybrid motif Cyclophilin-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Translation proteins Translation proteins 11
Galactose mutarotase-like Galactose mutarotase-like 11
DNA clamp DNA clamp 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Copper amine oxidase, domain N Amine oxidase catalytic domain 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Six-hairpin glycosidases gamma-Crystallin-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
His-Me finger endonucleases DNA-binding domain 11
PheT/TilS domain Putative DNA-binding domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
TATA-box binding protein-like DNA-glycosylase 11
Methionine synthase domain Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Dimeric alpha+beta barrel 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Cupredoxins Cupredoxins 11
Class II aaRS and biotin synthetases Translation proteins 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Sialidases Concanavalin A-like lectins/glucanases 11
YdhG-like Acyl-CoA N-acyltransferases (Nat) 11
Macro domain-like Zn-dependent exopeptidases 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
PH0987 N-terminal domain-like Single hybrid motif 11
MoaD/ThiS Molybdopterin synthase subunit MoaE 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Homeodomain-like (Trans)glycosidases 11
DAK1/DegV-like DhaL-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Lysozyme-like Duplicated hybrid motif 11
CheY-binding domain of CheA CheW-like 11
Copper amine oxidase, domain N Zn-dependent exopeptidases 11
gamma-Crystallin-like Galactose-binding domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
RmlC-like cupins (Trans)glycosidases 11
DeoB insert domain-like Alkaline phosphatase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Serine metabolism enzymes domain ACT-like 11
Fibronectin type III Carbohydrate binding domain 11
Lamin A/C globular tail domain Cadherin-like 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Sialidases Fibronectin type III 11
Ribosomal protein L6 Ribosomal protein L6 11
LysM domain Duplicated hybrid motif 11
Cadherin-like Carboxypeptidase regulatory domain-like 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Anthrax protective antigen Metallo-dependent phosphatases 11
Actin-crosslinking proteins Invasin/intimin cell-adhesion fragments 11
Chondroitin AC/alginate lyase Galactose mutarotase-like 11
Rhodanese/Cell cycle control phosphatase DsrEFH-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Chaperone J-domain TPR-like 11
Fibronectin type III Six-hairpin glycosidases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Carboxypeptidase regulatory domain-like Invasin/intimin cell-adhesion fragments 11
CoA-dependent acyltransferases ACP-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Actin-crosslinking proteins Beta-D-glucan exohydrolase, C-terminal domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Integrin alpha N-terminal domain E set domains 11
Lamin A/C globular tail domain YVTN repeat-like/Quinoprotein amine dehydrogenase 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
FAD/NAD(P)-binding domain Galactose-binding domain-like 11
Globin-like Riboflavin synthase domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
PHP domain-like Ribonuclease H-like 11
PTS system IIB component-like Phoshotransferase/anion transport protein 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
RNase III domain-like dsRNA-binding domain-like 11
RuvA domain 2-like RuvA domain 2-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Trigger factor ribosome-binding domain FKBP-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Galactose mutarotase-like Hyaluronate lyase-like, C-terminal domain 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Invasin/intimin cell-adhesion fragments 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
ClpP/crotonase NfeD domain-like 11
Galactose-binding domain-like Integrin alpha N-terminal domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Nucleotidyltransferase ACT-like 11
PUA domain-like alpha/beta knot 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
CheY-like CheY-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Acetamidase/Formamidase-like Copper amine oxidase, domain N 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 11
Type I dockerin domain Amidase signature (AS) enzymes 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Sensory domain-like Sensory domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
(Trans)glycosidases Putative glucosidase YicI, C-terminal domain 11
PreATP-grasp domain Cyclophilin-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Kelch motif Galactose oxidase, central domain 11
Copper amine oxidase, domain N Trypsin-like serine proteases 11
TGS-like ACT-like 11
KaiA/RbsU domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
"Winged helix" DNA-binding domain PRTase-like 11
KaiA/RbsU domain PYP-like sensor domain (PAS domain) 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Cyclophilin-like Cyclophilin-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
DNA methylase specificity domain DNA methylase specificity domain 11
Metallo-dependent phosphatases Type I dockerin domain 11
PPK N-terminal domain-like PHP14-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Metallo-dependent phosphatases Fibronectin type III 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PreATP-grasp domain Single hybrid motif 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
SGNH hydrolase Integrin alpha N-terminal domain 11
Formyltransferase FMT C-terminal domain-like 11
Transmembrane di-heme cytochromes Oxidoreductase molybdopterin-binding domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Cyclophilin-like Single hybrid motif 11
Pectin lyase-like Six-hairpin glycosidases 11
RuvA domain 2-like JAB1/MPN domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Galactose mutarotase-like Putative glucosidase YicI, C-terminal domain 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Hypothetical protein SAV1430 ARM repeat 11
Acetyl-CoA synthetase-like ACP-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
GroEL equatorial domain-like GroEL apical domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Fibronectin type III Arabinanase/levansucrase/invertase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 11
Fibronectin type III Chitinase insertion domain 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
CBS-domain pair Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Pectin lyase-like Starch-binding domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Ribonuclease H-like TPR-like 11
P-loop containing nucleoside triphosphate hydrolases Metallo-dependent phosphatases 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
SMAD/FHA domain C-terminal effector domain of the bipartite response regulators 11
Arabinanase/levansucrase/invertase Invasin/intimin cell-adhesion fragments 11
SacY-like RNA-binding domain PTS-regulatory domain, PRD 11
SirA-like DsrEFH-like 11
L9 N-domain-like Ribonuclease H-like 11
Cadherin-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
CheY-like Nucleotide cyclase 11
lambda repressor-like DNA-binding domains S-adenosyl-L-methionine-dependent methyltransferases 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Nucleotidylyl transferase tRNA-binding arm 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
RCC1/BLIP-II RCC1/BLIP-II 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Flavoproteins Riboflavin synthase domain-like 11
Ribonuclease H-like RuvA domain 2-like 11
(Trans)glycosidases Anthrax protective antigen 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
SGNH hydrolase Copper amine oxidase, domain N 11
MesJ substrate recognition domain-like PheT/TilS domain 11
HisI-like all-alpha NTP pyrophosphatases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
DNA repair protein MutS, domain III SMR domain-like 11
Sec-C motif Cyclin-like 11
Collagen-binding domain Collagen-binding domain 11
RmlC-like cupins "Helical backbone" metal receptor 11
Protein prenylyltransferase TPR-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Sialidases Invasin/intimin cell-adhesion fragments 11
Pectin lyase-like Carboxypeptidase regulatory domain-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
SGNH hydrolase E set domains 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Metallo-dependent phosphatases Metallo-dependent phosphatases 11
Galactose-binding domain-like Metallo-dependent phosphatases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
FAD/NAD(P)-binding domain ISP domain 11
Class II aaRS and biotin synthetases SufE/NifU 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Sialidases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Copper amine oxidase, domain N PKD domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
YrdC/RibB RibA-like 11
P-loop containing nucleoside triphosphate hydrolases AbrB/MazE/MraZ-like 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
KaiA/RbsU domain Homodimeric domain of signal transducing histidine kinase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 11
Tetrapyrrole methylase HemD-like 11
Chondroitin AC/alginate lyase Hyaluronate lyase-like, C-terminal domain 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
(Trans)glycosidases Invasin/intimin cell-adhesion fragments 11
Pectin lyase-like Invasin/intimin cell-adhesion fragments 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Periplasmic binding protein-like II vWA-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Tex N-terminal region-like Ribonuclease H-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Actin-crosslinking proteins Galactose-binding domain-like 11
Glutaminase/Asparaginase Fibronectin type III 11
GIY-YIG endonuclease RuvA domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Rhodanese/Cell cycle control phosphatase SirA-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
HRDC-like Troponin coil-coiled subunits 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Purple acid phosphatase, N-terminal domain Type I dockerin domain 11
(Trans)glycosidases Sialidases 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PK C-terminal domain-like Phosphohistidine domain 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases DNA ligase/mRNA capping enzyme, catalytic domain 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
HD-domain/PDEase-like TGS-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain PreATP-grasp domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
RuvA domain 2-like BRCT domain 11
E set domains Six-hairpin glycosidases 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
Acyl-CoA N-acyltransferases (Nat) SCP-like 11
Homeodomain-like Glycosyl hydrolase domain 11
PHP domain-like P-loop containing nucleoside triphosphate hydrolases 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Cystatin/monellin Cystatin/monellin 11
Nucleotidyltransferase TGS-like 11
Subtilisin-like Collagen-binding domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleic acid-binding proteins GAD domain-like 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
Carbohydrate-binding domain Carbohydrate-binding domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
HprK N-terminal domain-like CBS-domain pair 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Hypothetical protein PA1324 Calcium-dependent phosphotriesterase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Hsp33 domain HSP33 redox switch-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
YajQ-like YajQ-like 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
UROD/MetE-like UROD/MetE-like 11
LysM domain L,D-transpeptidase catalytic domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11

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