SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Pseudomonas stutzeri A1501

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

746 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5735
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 372
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3715
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3224
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2921
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2724
CheY-like Homodimeric domain of signal transducing histidine kinase 2522
PYP-like sensor domain (PAS domain) CheY-like 2017
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1918
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 174
CheY-like C-terminal effector domain of the bipartite response regulators 162
Nucleotide cyclase EAL domain-like 1510
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 145
Actin-like ATPase domain Actin-like ATPase domain 143
GroES-like NAD(P)-binding Rossmann-fold domains 143
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 135
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 132
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 136
Homeodomain-like Homeodomain-like 125
PYP-like sensor domain (PAS domain) Nucleotide cyclase 129
CheY-like CheY-like 1211
Thioredoxin-like GST C-terminal domain-like 112
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 116
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 101
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 106
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 105
PYP-like sensor domain (PAS domain) EAL domain-like 97
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 94
CheY-like P-loop containing nucleoside triphosphate hydrolases 93
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 95
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 95
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 95
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 95
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 95
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 95
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 95
Thiolase-like Thiolase-like 91
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 95
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 94
P-loop containing nucleoside triphosphate hydrolases MOP-like 82
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 85
P-loop containing nucleoside triphosphate hydrolases Translation proteins 87
CheY-like Homeodomain-like 82
(Trans)glycosidases Glycosyl hydrolase domain 87
Cytochrome c Cytochrome c 83
Calcium ATPase, transmembrane domain M HAD-like 76
Calcium ATPase, transduction domain A HAD-like 76
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 76
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Regulatory protein AraC Homeodomain-like 63
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 63
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 62
GAF domain-like PYP-like sensor domain (PAS domain) 66
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 66
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 66
GAF domain-like Homodimeric domain of signal transducing histidine kinase 66
CheY-like Nucleotide cyclase 54
PLP-binding barrel Alanine racemase C-terminal domain-like 52
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 52
PreATP-grasp domain Rudiment single hybrid motif 53
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 52
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 51
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 54
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 44
Nucleic acid-binding proteins RuvA domain 2-like 44
E set domains (Trans)glycosidases 44
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 43
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 42
ACT-like ACT-like 43
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 41
Phospholipase D/nuclease Phospholipase D/nuclease 42
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 42
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 42
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 43
TrkA C-terminal domain-like TrkA C-terminal domain-like 42
PurM N-terminal domain-like PurM C-terminal domain-like 42
RmlC-like cupins Homeodomain-like 42
Histidine-containing phosphotransfer domain, HPT domain CheY-like 43
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 41
Triger factor/SurA peptide-binding domain-like FKBP-like 44
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 44
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
HlyD-like secretion proteins HlyD-like secretion proteins 43
HD-domain/PDEase-like Nucleotidyltransferase 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
E set domains Glycosyl hydrolase domain 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Aldolase post-HMGL domain-like 32
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
Alpha-L RNA-binding motif Pseudouridine synthase 31
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 33
DNA methylase specificity domain DNA methylase specificity domain 33
TPR-like TPR-like 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
GAF domain-like CheY-like 33
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 31
"Winged helix" DNA-binding domain GAF domain-like 31
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
HMA, heavy metal-associated domain HAD-like 33
Cupredoxins Cupredoxins 33
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
CheW-like CheY-like 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
Class I glutamine amidotransferase-like Homeodomain-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Translation proteins EF-G C-terminal domain-like 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
HD-domain/PDEase-like ACT-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 31
LeuD/IlvD-like Aconitase iron-sulfur domain 32
Nucleotidyltransferase ACT-like 32
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
"Winged helix" DNA-binding domain PLP-dependent transferases 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Nucleotidyltransferase TGS-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase PP2C-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
PDZ domain-like PDZ domain-like 22
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
TGS-like ACT-like 21
ACT-like P-loop containing nucleoside triphosphate hydrolases 22
PDZ domain-like ClpP/crotonase 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
GAF domain-like GAF domain-like 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
HD-domain/PDEase-like TGS-like 21
Ribonuclease H-like DNA/RNA polymerases 22
PUA domain-like Ribosomal protein S5 domain 2-like 22
PK beta-barrel domain-like PK C-terminal domain-like 21
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
GAF domain-like EAL domain-like 22
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 21
Sensory domain-like Nucleotide cyclase 22
L30e-like alpha/beta knot 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 22
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
PYP-like sensor domain (PAS domain) Homeodomain-like 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
Thioredoxin-like FAD/NAD(P)-binding domain 21
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
Periplasmic binding protein-like II Lysozyme-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
PP2C-like Protein kinase-like (PK-like) 21
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases TPR-like 21
Homeodomain-like SIS domain 21
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
GAF domain-like Nucleotide cyclase 22
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 21
post-HMGL domain-like Single hybrid motif 21
DsbC/DsbG N-terminal domain-like Thioredoxin-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
MFS general substrate transporter MFS general substrate transporter 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
TPR-like C-terminal effector domain of the bipartite response regulators 21
HAMP domain-like PYP-like sensor domain (PAS domain) 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Starch-binding domain-like (Trans)glycosidases 22
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 21
Starch-binding domain-like Glycosyl hydrolase domain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 22
GAF domain-like Homeodomain-like 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Trypsin-like serine proteases PDZ domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 21
Thioredoxin-like Thioredoxin-like 21
Aldolase Single hybrid motif 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
Cupredoxins Cytochrome c 22
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 22
CheY-like Methylesterase CheB, C-terminal domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Sensory domain-like PYP-like sensor domain (PAS domain) 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
PRTase-like PRTase-like 21
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 22
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
CheY-like EAL domain-like 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
Single hybrid motif CoA-dependent acyltransferases 22
Globin-like Nucleotide cyclase 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
RuvA domain 2-like RuvA domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 21
Carbamate kinase-like ACT-like 22
E set domains E set domains 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Metallo-hydrolase/oxidoreductase SCP-like 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Zinc beta-ribbon Zinc beta-ribbon 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
OMPA-like OmpA-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
HPr-like Phosphohistidine domain 11
Thioredoxin-like TPR-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Lysozyme-like PGBD-like 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases FAD/NAD(P)-binding domain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
PurS-like Class I glutamine amidotransferase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Aldolase AFP III-like domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
cAMP-binding domain-like cAMP-binding domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nucleotidylyl transferase tRNA-binding arm 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
cAMP-binding domain-like CBS-domain pair 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain MOP-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FMN-binding split barrel UbiD C-terminal domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
HRDC-like HRDC-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
RNase III domain-like dsRNA-binding domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PTS system IIB component-like PTS system IIB component-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Hsp33 domain HSP33 redox switch-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
PreATP-grasp domain Single hybrid motif 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
cAMP-binding domain-like Rhodanese/Cell cycle control phosphatase 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
ACT-like HAD-like 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Galactose mutarotase-like E set domains 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Flavoproteins Riboflavin synthase domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
YbaK/ProRS associated domain HD-domain/PDEase-like 11
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
vWA-like TPR-like 11
Trigger factor ribosome-binding domain FKBP-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Radical SAM enzymes RuvA domain 2-like 11
L domain-like Protein kinase-like (PK-like) 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Caspase-like 11
ACT-like PYP-like sensor domain (PAS domain) 11
Pseudouridine synthase PUA domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Sigma2 domain of RNA polymerase sigma factors FKBP-like 11
HMA, heavy metal-associated domain Cation efflux protein transmembrane domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
HAMP domain-like CheY-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Galactose-binding domain-like Galactose-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
NTF2-like Sec-C motif 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
SMAD/FHA domain SMAD/FHA domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
TATA-box binding protein-like DNA-glycosylase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
Translation proteins Translation proteins 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
GroEL-intermediate domain like GroEL apical domain-like 11
SGNH hydrolase Autotransporter 11
(Phosphotyrosine protein) phosphatases II FAD/NAD(P)-binding domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
TGS-like Class II aaRS and biotin synthetases 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
GIY-YIG endonuclease RuvA domain 2-like 11
PurS-like FGAM synthase PurL, linker domain 11
Phase 1 flagellin Phase 1 flagellin 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
CBS-domain pair MgtE membrane domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
PurS-like PurM C-terminal domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
LysM domain LysM domain 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
DNA clamp DNA clamp 11
TGS-like ThrRS/AlaRS common domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
Formyltransferase FMT C-terminal domain-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
CheY-like HD-domain/PDEase-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
UROD/MetE-like UROD/MetE-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
CheY-like PP2C-like 11
CBS-domain pair Nucleotide cyclase 11
Globin-like EAL domain-like 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Translation proteins "Winged helix" DNA-binding domain 11
CarD-like TRCF domain-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Rudiment single hybrid motif Single hybrid motif 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
ACT-like Formyltransferase 11
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Nudix Nudix 11
Starch-binding domain-like E set domains 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Nudix Thiamin phosphate synthase 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
YajQ-like YajQ-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Ribokinase-like Nucleotidylyl transferase 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
Periplasmic binding protein-like I Periplasmic binding protein-like I 11
Ribosomal protein L6 Ribosomal protein L6 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
PA domain Zn-dependent exopeptidases 11
Ribonuclease H-like HRDC-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors FKBP-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
MalF N-terminal region-like MetI-like 11
Macro domain-like Zn-dependent exopeptidases 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
ACT-like Homeodomain-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
TerB-like Periplasmic binding protein-like I 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Sensory domain-like HAMP domain-like 11
PHP14-like Phospholipase D/nuclease 11
Resolvase-like Homeodomain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Restriction endonuclease-like Zinc beta-ribbon 11
Sporulation related repeat Sporulation related repeat 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Ribonuclease H-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Sporulation related repeat 11
Single hybrid motif Single hybrid motif 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
SGNH hydrolase HAD-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Ferritin-like Ferritin-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
RuvA domain 2-like JAB1/MPN domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
GroES-like GroES-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
P-loop containing nucleoside triphosphate hydrolases Periplasmic binding protein-like II 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Protein kinase-like (PK-like) TPR-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
FliG FliG 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
WD40 repeat-like MetI-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ferritin-like HAD-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Periplasmic binding protein-like II OmpA-like 11
YegP-like YegP-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
HD-domain/PDEase-like GAF domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Zn-dependent exopeptidases LysM domain 11
Acetyl-CoA synthetase-like ACP-like 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
FAD-linked oxidoreductase ALDH-like 11
ClpP/crotonase ClpP/crotonase 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
ClpP/crotonase NfeD domain-like 11
Carbamate kinase-like PUA domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Periplasmic binding protein-like II Nucleotide cyclase 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Acyl-CoA N-acyltransferases (Nat) Glutathione synthetase ATP-binding domain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
PPK N-terminal domain-like PHP14-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Putative DNA-binding domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Pili subunits GspK insert domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Globin-like PYP-like sensor domain (PAS domain) 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
GAF domain-like Phosphohistidine domain 11
MetI-like MetI-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
PLP-dependent transferases PLP-dependent transferases 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Zinc beta-ribbon DNA primase core 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
EAL domain-like CBS-domain pair 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Periplasmic binding protein-like II ACT-like 11
Globin-like Riboflavin synthase domain-like 11
Translation proteins ThrRS/AlaRS common domain 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
FKBP-like FKBP-like 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
HAMP domain-like PP2C-like 11
ISP domain Bet v1-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain ISP domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
PIN domain-like DNA/RNA polymerases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
CheY-like CheC-like 11
Barwin-like endoglucanases Sporulation related repeat 11
Thermostable phytase (3-phytase) Thermostable phytase (3-phytase) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
ACP-like alpha/beta-Hydrolases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like BRCT domain 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
MOP-like MOP-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Chorismate mutase II ACT-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Nucleic acid-binding proteins BRCT domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Tex N-terminal region-like Ribonuclease H-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
PLP-dependent transferases FMN-linked oxidoreductases 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Translation proteins PRC-barrel domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Phoshotransferase/anion transport protein HPr-like 11
TGS-like Class II aaRS ABD-related 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
YjeF N-terminal domain-like Ribokinase-like 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
DNA-glycosylase Nudix 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
PurS-like PurM N-terminal domain-like 11
Acyl-CoA N-acyltransferases (Nat) Nudix 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Bacterial muramidases Lysozyme-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
YrdC/RibB RibA-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidylyl transferase YegP-like 11
Putative DNA-binding domain Translation proteins 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
TerB-like Chaperone J-domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Ferritin-like Calcium ATPase, transduction domain A 11
Lysozyme-like LysM domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Tex N-terminal region-like RuvA domain 2-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
PUA domain-like alpha/beta knot 11
PIN domain-like Ribonuclease H-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
CheC-like Surface presentation of antigens (SPOA) 11

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