SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Shewanella putrefaciens CN-32

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

775 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 421
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3215
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3113
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 227
Nucleotide cyclase EAL domain-like 2112
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 206
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 206
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 206
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 206
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 206
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1610
Actin-like ATPase domain Actin-like ATPase domain 156
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 147
CheY-like C-terminal effector domain of the bipartite response regulators 131
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 126
PYP-like sensor domain (PAS domain) EAL domain-like 116
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 105
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 103
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 105
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 106
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 107
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 92
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 96
P-loop containing nucleoside triphosphate hydrolases Translation proteins 96
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 87
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 83
ACT-like ACT-like 85
Calcium ATPase, transduction domain A HAD-like 76
CheY-like Homeodomain-like 73
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 72
GAF domain-like Nucleotide cyclase 76
Thiolase-like Thiolase-like 72
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 65
Calcium ATPase, transmembrane domain M HAD-like 65
DPP6 N-terminal domain-like alpha/beta-Hydrolases 62
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
Cytochrome c Cytochrome c 63
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 61
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 61
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 65
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 63
CheY-like P-loop containing nucleoside triphosphate hydrolases 62
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 65
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 61
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 62
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
Alpha-L RNA-binding motif Pseudouridine synthase 61
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 63
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 55
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
GroES-like NAD(P)-binding Rossmann-fold domains 52
PurM N-terminal domain-like PurM C-terminal domain-like 52
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 53
PreATP-grasp domain Rudiment single hybrid motif 53
cAMP-binding domain-like "Winged helix" DNA-binding domain 51
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 52
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 53
Homodimeric domain of signal transducing histidine kinase CheY-like 55
P-loop containing nucleoside triphosphate hydrolases MOP-like 52
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 52
Translation proteins EF-G C-terminal domain-like 53
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 43
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
PYP-like sensor domain (PAS domain) CheY-like 44
DNA methylase specificity domain DNA methylase specificity domain 41
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 44
Thioredoxin-like GST C-terminal domain-like 41
Homeodomain-like Homeodomain-like 43
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 42
CheW-like CheY-like 42
GAF domain-like EAL domain-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 44
HMA, heavy metal-associated domain Cation efflux protein transmembrane domain-like 41
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
MgtE N-terminal domain-like CBS-domain pair 32
PDZ domain-like ClpP/crotonase 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Nucleotidyltransferase ACT-like 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
RmlC-like cupins Homeodomain-like 32
ClpP/crotonase ClpP/crotonase 33
MgtE N-terminal domain-like MgtE membrane domain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Carbamate kinase-like ACT-like 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Triger factor/SurA peptide-binding domain-like FKBP-like 33
HD-domain/PDEase-like ACT-like 32
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
HMA, heavy metal-associated domain HAD-like 32
CheY-like CheY-like 33
CBS-domain pair MgtE membrane domain-like 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
CheY-like Histidine-containing phosphotransfer domain, HPT domain 33
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 33
TPR-like TPR-like 32
2Fe-2S ferredoxin-like alpha-helical ferredoxin 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
PLP-binding barrel Alanine racemase C-terminal domain-like 31
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 31
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 31
Nucleotidyltransferase HD-domain/PDEase-like 32
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 32
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
"Winged helix" DNA-binding domain PLP-dependent transferases 31
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
GAF domain-like PYP-like sensor domain (PAS domain) 32
E set domains (Trans)glycosidases 33
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 33
GAF domain-like Homeodomain-like 31
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Galactose mutarotase-like E set domains 31
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
Single hybrid motif CoA-dependent acyltransferases 33
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Quinoprotein alcohol dehydrogenase-like Nucleotide cyclase 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
PapD-like Periplasmic chaperone C-domain 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
E set domains Glycosyl hydrolase domain 22
Lysozyme-like LysM domain 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
FliG FliG 21
Single hybrid motif Single hybrid motif 22
HD-domain/PDEase-like TGS-like 21
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
TGS-like ACT-like 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 22
Leukotriene A4 hydrolase N-terminal domain ARM repeat 21
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
PreATP-grasp domain Single hybrid motif 22
Metalloproteases ("zincins"), catalytic domain ARM repeat 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 21
Ribonuclease H-like DNA/RNA polymerases 22
(Trans)glycosidases Glycosyl hydrolase domain 22
LysM domain LysM domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 21
Multiheme cytochromes FAD/NAD(P)-binding domain 21
Quinoprotein alcohol dehydrogenase-like PYP-like sensor domain (PAS domain) 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
Trypsin-like serine proteases PDZ domain-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Multiheme cytochromes Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
TPR-like Nucleotide cyclase 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
Zinc beta-ribbon Zinc beta-ribbon 22
Macro domain-like Zn-dependent exopeptidases 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 22
TSP type-3 repeat OmpA-like 22
Cadherin-like Cadherin-like 22
Phospholipase D/nuclease Phospholipase D/nuclease 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
PA domain Zn-dependent exopeptidases 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 21
Quinoprotein alcohol dehydrogenase-like EAL domain-like 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
Rudiment single hybrid motif Single hybrid motif 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
LeuD/IlvD-like Aconitase iron-sulfur domain 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Resolvase-like Homeodomain-like 21
PDZ domain-like PDZ domain-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Nucleotidyltransferase TGS-like 21
CheY-like EAL domain-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
Regulatory protein AraC Homeodomain-like 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Carbamate kinase-like PUA domain-like 21
Homeodomain-like TATA-box binding protein-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Cupredoxins Pentapeptide repeat-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Collagen-binding domain Galactose-binding domain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nucleotide-binding domain Formate dehydrogenase/DMSO reductase, domains 1-3 11
DPP6 N-terminal domain-like PDZ domain-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
CheY-like HD-domain/PDEase-like 11
Restriction endonuclease-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Fibronectin type III Cadherin-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
Arabinanase/levansucrase/invertase Ricin B-like lectins 11
Pseudouridine synthase PUA domain-like 11
Ferritin-like Calcium ATPase, transduction domain A 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
NTF2-like Sec-C motif 11
HisI-like all-alpha NTP pyrophosphatases 11
Ribokinase-like Thiamin phosphate synthase 11
GspK insert domain-like GspK insert domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Sensory domain-like Sensory domain-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
ACP-like ACP-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Subtilisin-like PA domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Mss4-like Peptide methionine sulfoxide reductase 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ricin B-like lectins Ricin B-like lectins 11
HD-domain/PDEase-like Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
H-NS histone-like proteins H-NS histone-like proteins 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Subtilisin-like Galactose-binding domain-like 11
Globin-like Nucleotide cyclase 11
CheY-like CheC-like 11
CheY-like "Winged helix" DNA-binding domain 11
Nucleotidylyl transferase tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
HRDC-like HRDC-like 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
ClpP/crotonase Rudiment single hybrid motif 11
HAMP domain-like EAL domain-like 11
GAF domain-like HD-domain/PDEase-like 11
post-HMGL domain-like Single hybrid motif 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
DPP6 N-terminal domain-like ClpP/crotonase 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Fibronectin type III OMPA-like 11
CheY-like PLP-dependent transferases 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
L30e-like alpha/beta knot 11
Calcium-dependent phosphotriesterase PYP-like sensor domain (PAS domain) 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Aldolase Single hybrid motif 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Chorismate mutase II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
Lamin A/C globular tail domain DNase I-like 11
NTF2-like Nucleotide cyclase 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PurS-like PurM C-terminal domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Cupredoxins Cupredoxins 11
Porins Porins 11
PHP14-like Phospholipase D/nuclease 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Fibronectin type III Fibronectin type III 11
OMPA-like TSP type-3 repeat 11
CarD-like TRCF domain-like 11
Formyltransferase FMT C-terminal domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
GAF domain-like CBS-domain pair 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
CheC-like Surface presentation of antigens (SPOA) 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
HAD-like Ribosomal protein S5 domain 2-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Ribonuclease H-like HRDC-like 11
Hsp33 domain HSP33 redox switch-like 11
Bacterial muramidases Lysozyme-like 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
2Fe-2S ferredoxin-like ADC-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
HAMP domain-like Nucleotide cyclase 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
PreATP-grasp domain Methylglyoxal synthase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
TGS-like Class II aaRS ABD-related 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Zn-dependent exopeptidases LysM domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Class II aaRS and biotin synthetases Translation proteins 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Carbohydrate-binding domain (Trans)glycosidases 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
PHP domain-like AF1531-like 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PRTase-like PRTase-like 11
ACT-like Formyltransferase 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
PIN domain-like Ribonuclease H-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PurS-like FGAM synthase PurL, linker domain 11
Ferritin-like HAD-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Periplasmic binding protein-like II Aldolase 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
ACT-like Homeodomain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Protease propeptides/inhibitors Collagen-binding domain 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Barwin-like endoglucanases Sporulation related repeat 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
ALDH-like Dehydroquinate synthase-like 11
Carbohydrate-binding domain E set domains 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Ribonuclease H-like RuvA domain 2-like 11
Cytidine deaminase-like Cytidine deaminase-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
PheT/TilS domain Putative DNA-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
DPP6 N-terminal domain-like Metallo-dependent hydrolases 11
Periplasmic binding protein-like II ACT-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
PurS-like PurM N-terminal domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
PreATP-grasp domain PreATP-grasp domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Chorismate mutase II Aldolase 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Translation proteins PRC-barrel domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins ThrRS/AlaRS common domain 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Aldolase post-HMGL domain-like 11
Ribokinase-like Nucleotidylyl transferase 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
CBS-domain pair Nucleotide cyclase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
YrdC/RibB RibA-like 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
vWA-like Quinoprotein alcohol dehydrogenase-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Periplasmic binding protein-like II CheY-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
beta-N-acetylhexosaminidase-like domain E set domains 11
RuvA domain 2-like JAB1/MPN domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
cAMP-binding domain-like CBS-domain pair 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Cadherin-like beta-Roll 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Subtilisin-like Collagen-binding domain 11
GAF domain-like GAF domain-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Tricorn protease N-terminal domain ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Nucleic acid-binding proteins GAD domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Quinoprotein alcohol dehydrogenase-like Calcium-dependent phosphotriesterase 11
Aldolase AFP III-like domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Homeodomain-like DNA-glycosylase 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
HAMP domain-like CheY-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
RuvA domain 2-like BRCT domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 11
Flavoproteins Riboflavin synthase domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
RNase III domain-like dsRNA-binding domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Fibronectin type III Integrin alpha N-terminal domain 11
ClpP/crotonase Single hybrid motif 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Phase 1 flagellin Phase 1 flagellin 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Cadherin-like CalX-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
GIY-YIG endonuclease RuvA domain 2-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Nudix "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Sporulation related repeat 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
Homeodomain-like SIS domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
PLP-dependent transferases PLP-dependent transferases 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Cupredoxins Cytochrome c 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
PurS-like Class I glutamine amidotransferase-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Hemerythrin-like 11
FabD/lysophospholipase-like ACP-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Nucleic acid-binding proteins BRCT domain 11
OMPA-like OmpA-like 11
Protease propeptides/inhibitors Galactose-binding domain-like 11
GAF domain-like Phosphohistidine domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Thioredoxin-like Thioredoxin-like 11
UROD/MetE-like UROD/MetE-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Sensory domain-like Nucleotide cyclase 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Pili subunits GspK insert domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
HCP-like HCP-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Periplasmic binding protein-like II Nucleotide cyclase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
TGS-like ThrRS/AlaRS common domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Thiolase-like FabD/lysophospholipase-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
PIN domain-like DNA/RNA polymerases 11
CheY-like Ornithine decarboxylase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
CheY-like Nucleotide cyclase 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Cadherin-like OMPA-like 11
Tricorn protease N-terminal domain PDZ domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
TGS-like Class II aaRS and biotin synthetases 11
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Trigger factor ribosome-binding domain FKBP-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
DeoB insert domain-like Alkaline phosphatase-like 11
MetI-like MetI-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
ClpP/crotonase PreATP-grasp domain 11
CcmK-like CcmK-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
ACT-like Aldolase 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
2Fe-2S ferredoxin-like Nucleotide-binding domain 11
Nucleotide-binding domain ADC-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Periplasmic binding protein-like II GlnB-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
4Fe-4S ferredoxins ADC-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
DPP6 N-terminal domain-like Composite domain of metallo-dependent hydrolases 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
EAL domain-like CBS-domain pair 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
PPK N-terminal domain-like PHP14-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
DNA clamp DNA clamp 11
Metalloproteases ("zincins"), catalytic domain PKD domain 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PilZ domain-like PilZ domain-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Zinc beta-ribbon DNA primase core 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Protease propeptides/inhibitors Subtilisin-like 11
Periplasmic binding protein-like II Lysozyme-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
DNA-glycosylase Nudix 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
PUA domain-like alpha/beta knot 11
Sensory domain-like Sporulation response regulatory protein Spo0B 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Restriction endonuclease-like "Winged helix" DNA-binding domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Lysozyme-like PGBD-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Calcium-dependent phosphotriesterase Nucleotide cyclase 11
Ribonuclease H-like Nucleic acid-binding proteins 11
RuvA domain 2-like RuvA domain 2-like 11
(Phosphotyrosine protein) phosphatases II NAD kinase/diacylglycerol kinase-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Translation proteins Translation proteins 11
YajQ-like YajQ-like 11
CalX-like OMPA-like 11
Putative DNA-binding domain Translation proteins 11
Homeodomain-like Ribonuclease H-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Calcium-dependent phosphotriesterase EAL domain-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
ClpP/crotonase Glutathione synthetase ATP-binding domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
FKBP-like FKBP-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Fibronectin type III CalX-like 11
FAD-linked oxidoreductase ALDH-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
vWA-like TPR-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
PKD domain PKD domain 11
Concanavalin A-like lectins/glucanases FAD-binding/transporter-associated domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
GroES-like GroES-like 11
DNase I-like PKD domain 11
L domain-like Protein kinase-like (PK-like) 11
TATA-box binding protein-like DNA-glycosylase 11
MesJ substrate recognition domain-like PheT/TilS domain 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Thiolase-like ACP-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Nucleotidyltransferase Nucleotidyltransferase 11
Class II aaRS and biotin synthetases GAD domain-like 11
HD-domain/PDEase-like CBS-domain pair 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Ribosomal protein L6 Ribosomal protein L6 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase MetI-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Tricorn protease N-terminal domain DPP6 N-terminal domain-like 11

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