SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Brevibacillus brevis NBRC 100599

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

816 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5815
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 505
CheY-like C-terminal effector domain of the bipartite response regulators 433
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3311
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 311
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 281
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 257
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 236
CoA-dependent acyltransferases CoA-dependent acyltransferases 2220
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 225
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 221
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 222
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 224
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 2119
Acetyl-CoA synthetase-like ACP-like 2119
CoA-dependent acyltransferases ACP-like 2119
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 196
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 184
"Winged helix" DNA-binding domain PLP-dependent transferases 181
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1810
Homeodomain-like Homeodomain-like 1711
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 173
ACP-like ACP-like 1616
Thiolase-like Thiolase-like 156
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 155
Actin-like ATPase domain Actin-like ATPase domain 155
PYP-like sensor domain (PAS domain) Homeodomain-like 123
HlyD-like secretion proteins HlyD-like secretion proteins 125
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 127
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 125
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 115
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 1010
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 102
P-loop containing nucleoside triphosphate hydrolases MOP-like 101
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 86
cAMP-binding domain-like "Winged helix" DNA-binding domain 81
lambda repressor-like DNA-binding domains TPR-like 82
ACP-like Thiolase-like 88
GroES-like NAD(P)-binding Rossmann-fold domains 81
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 71
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 74
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 74
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 74
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 74
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 75
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 73
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 77
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 74
"Winged helix" DNA-binding domain GAF domain-like 71
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 74
TPR-like C-terminal effector domain of the bipartite response regulators 74
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 62
S-adenosyl-L-methionine-dependent methyltransferases ACP-like 66
ACP-like NAD(P)-binding Rossmann-fold domains 66
PreATP-grasp domain Rudiment single hybrid motif 62
P-loop containing nucleoside triphosphate hydrolases TPR-like 64
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 61
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 61
CheY-like Homeodomain-like 64
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 63
Homeodomain-like "Helical backbone" metal receptor 63
"Winged helix" DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 65
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 61
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 66
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 63
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 66
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 64
Enolase N-terminal domain-like Enolase C-terminal domain-like 61
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 62
TPR-like TPR-like 66
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 51
Translation proteins EF-G C-terminal domain-like 54
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 55
CheY-like P-loop containing nucleoside triphosphate hydrolases 53
HAMP domain-like PYP-like sensor domain (PAS domain) 53
Nucleotide cyclase EAL domain-like 54
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 51
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 51
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54
PLP-binding barrel Alanine racemase C-terminal domain-like 52
lambda repressor-like DNA-binding domains RmlC-like cupins 51
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 51
Class II aaRS and biotin synthetases Class II aaRS ABD-related 54
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 51
Homeodomain-like SIS domain 51
PYP-like sensor domain (PAS domain) Nucleotide cyclase 54
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
Thiolase-like NAD(P)-binding Rossmann-fold domains 55
S-adenosyl-L-methionine-dependent methyltransferases Thiolase-like 55
Sensory domain-like PYP-like sensor domain (PAS domain) 52
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 42
DPP6 N-terminal domain-like alpha/beta-Hydrolases 42
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 44
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 44
Collagen-binding domain Collagen-binding domain 44
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 41
Alpha-L RNA-binding motif Pseudouridine synthase 41
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 44
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 41
Sensory domain-like HAMP domain-like 44
PYP-like sensor domain (PAS domain) EAL domain-like 43
CBS-domain pair FAD-binding/transporter-associated domain-like 41
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 44
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 42
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 42
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
Regulatory protein AraC Homeodomain-like 42
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 43
Homodimeric domain of signal transducing histidine kinase CheY-like 43
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 42
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 42
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 44
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 41
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 41
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 41
Calcium ATPase, transduction domain A HAD-like 44
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 44
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 42
Single hybrid motif CoA-dependent acyltransferases 42
ACT-like ACT-like 42
HAD-like Calcium ATPase, transmembrane domain M 44
Sensory domain-like Sporulation response regulatory protein Spo0B 41
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Galactose-binding domain-like Homodimeric domain of signal transducing histidine kinase 32
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 31
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 33
MetI-like MetI-like 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 31
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 32
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 31
PurM N-terminal domain-like PurM C-terminal domain-like 32
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 33
Acetyl-CoA synthetase-like Thiolase-like 33
Galactose-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
Fibronectin type III Carbohydrate binding domain 33
RuvA domain 2-like Nucleic acid-binding proteins 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Copper amine oxidase, domain N Copper amine oxidase, domain N 32
NAD(P)-binding Rossmann-fold domains ACT-like 33
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 32
Thiolase-like CoA-dependent acyltransferases 33
Carbamate kinase-like ACT-like 31
Trypsin-like serine proteases PDZ domain-like 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 32
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 33
MalF N-terminal region-like MetI-like 31
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 31
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 31
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 33
Regulatory protein AraC "Helical backbone" metal receptor 31
Galactose-binding domain-like CheY-like 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 32
Homeodomain-like Probable bacterial effector-binding domain 31
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 31
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 31
Nucleotide-diphospho-sugar transferases TPR-like 22
HMA, heavy metal-associated domain HAD-like 22
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
Serine metabolism enzymes domain ACT-like 22
Subtilisin-like Fibronectin type III 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Cupredoxins Cupredoxins 21
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 21
Subtilisin-like Invasin/intimin cell-adhesion fragments 22
Periplasmic binding protein-like II Periplasmic binding protein-like II 21
CheY-like "Winged helix" DNA-binding domain 21
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
PTS-regulatory domain, PRD PTS system IIB component-like 22
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 21
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 21
Restriction endonuclease-like Zinc beta-ribbon 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
SMAD/FHA domain C-terminal effector domain of the bipartite response regulators 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
CBS-domain pair Nucleotide cyclase 22
CheY-like TPR-like 21
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
Translation proteins Ribosomal protein S5 domain 2-like 22
ClpP/crotonase ClpP/crotonase 21
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 21
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 21
(Trans)glycosidases Fibronectin type III 22
Putative DNA-binding domain Probable bacterial effector-binding domain 21
vWA-like vWA-like 22
PDZ domain-like ClpP/crotonase 22
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 22
Nucleic acid-binding proteins Ribonuclease H-like 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
Acetyl-CoA synthetase-like S-adenosyl-L-methionine-dependent methyltransferases 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 21
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 21
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 21
Aldolase post-HMGL domain-like 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 21
CoA-dependent acyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 21
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase C-terminal effector domain of the bipartite response regulators 21
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Putative DNA-binding domain Putative DNA-binding domain 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
(Trans)glycosidases Carbohydrate binding domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
PA domain Subtilisin-like 21
Translation proteins ThrRS/AlaRS common domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Bacillus cereus metalloprotein-like Bacillus cereus metalloprotein-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 22
L30e-like alpha/beta knot 21
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 21
LmbE-like Class I glutamine amidotransferase-like 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
"Winged helix" DNA-binding domain Actin-like ATPase domain 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
"Winged helix" DNA-binding domain CBS-domain pair 22
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 22
Nudix "Winged helix" DNA-binding domain 21
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 21
FKBP-like Triger factor/SurA peptide-binding domain-like 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Invasin/intimin cell-adhesion fragments Fibronectin type III 22
PTS system IIB component-like Phoshotransferase/anion transport protein 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Sensory domain-like Nucleotide cyclase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
Glycoside hydrolase/deacetylase Glycoside hydrolase/deacetylase 21
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 22
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
N-acetylmuramoyl-L-alanine amidase-like Copper amine oxidase, domain N 21
P-loop containing nucleoside triphosphate hydrolases GAF domain-like 22
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
GAF domain-like Nucleotide cyclase 22
PreATP-grasp domain PreATP-grasp domain 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
MFS general substrate transporter MFS general substrate transporter 22
PreATP-grasp domain Methylglyoxal synthase-like 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
CheC-like Surface presentation of antigens (SPOA) 22
Copper amine oxidase, domain N (Trans)glycosidases 21
Homeodomain-like Ribonuclease H-like 21
PUA domain-like Nucleotidylyl transferase 21
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
Chaperone J-domain TPR-like 22
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Ribosomal protein L6 Ribosomal protein L6 11
SirA-like Rhodanese/Cell cycle control phosphatase 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
HprK N-terminal domain-like CBS-domain pair 11
Acetyl-CoA synthetase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
(Trans)glycosidases Hyaluronidase post-catalytic domain-like 11
Formyltransferase ACP-like 11
Metallo-dependent phosphatases DNA ligase/mRNA capping enzyme, catalytic domain 11
Ribonuclease H-like RuvA domain 2-like 11
CarD-like TRCF domain-like 11
Subtilisin-like Galactose-binding domain-like 11
Calcium-dependent phosphotriesterase Nucleotide cyclase 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Copper amine oxidase, domain N Zn-dependent exopeptidases 11
"Winged helix" DNA-binding domain HprK N-terminal domain-like 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Nucleotide-diphospho-sugar transferases Phosphoglucomutase, first 3 domains 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Macro domain-like Zn-dependent exopeptidases 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
"Winged helix" DNA-binding domain PTS system IIB component-like 11
Acetyl-CoA synthetase-like beta-lactamase/transpeptidase-like 11
YojJ-like RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Sensory domain-like Sensory domain-like 11
YrdC/RibB RibA-like 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Rudiment single hybrid motif Single hybrid motif 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
MFS general substrate transporter PYP-like sensor domain (PAS domain) 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
(Trans)glycosidases Chitinase insertion domain 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
Cadherin-like Invasin/intimin cell-adhesion fragments 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
KaiA/RbsU domain PP2C-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Cna protein B-type domain Cna protein B-type domain 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Cytochrome c Cytochrome c 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
DHS-like NAD/FAD-binding domain TPR-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
TGS-like ThrRS/AlaRS common domain 11
Starch-binding domain-like Starch-binding domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Glycoside hydrolase/deacetylase UDP-Glycosyltransferase/glycogen phosphorylase 11
RNase III domain-like dsRNA-binding domain-like 11
"Winged helix" DNA-binding domain HRDC-like 11
PGBD-like PGBD-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Formyltransferase FMT C-terminal domain-like 11
Fibronectin type III RCC1/BLIP-II 11
P-loop containing nucleoside triphosphate hydrolases DNA ligase/mRNA capping enzyme, catalytic domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
PRC-barrel domain PRC-barrel domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Chitinase insertion domain Fibronectin type III 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
PDZ domain-like PGBD-like 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Nucleic acid-binding proteins HD-domain/PDEase-like 11
Invasin/intimin cell-adhesion fragments Alkaline phosphatase-like 11
Concanavalin A-like lectins/glucanases Alkaline phosphatase-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
L,D-transpeptidase catalytic domain-like PGBD-like 11
gp5 N-terminal domain-like Phage fibre proteins 11
LysM domain LysM domain 11
DNA primase core N-terminal domain of DnaB helicase 11
Trimeric LpxA-like enzymes Phosphoglucomutase, first 3 domains 11
Rudiment single hybrid motif Aldolase 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
TPR-like Alkaline phosphatase-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Copper amine oxidase, domain N Duplicated hybrid motif 11
ACP-like alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Purine and uridine phosphorylases Thioredoxin-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
ClpP/crotonase NfeD domain-like 11
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
CheY-binding domain of CheA CheW-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
CheY-like Methylesterase CheB, C-terminal domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Lysozyme-like Duplicated hybrid motif 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
PYP-like sensor domain (PAS domain) "Winged helix" DNA-binding domain 11
PKD domain Collagen-binding domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
HisI-like all-alpha NTP pyrophosphatases 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
TGS-like Class II aaRS ABD-related 11
Ribonuclease H-like DNA/RNA polymerases 11
Cysteine proteinases Cysteine proteinases 11
Cystatin/monellin Cystatin/monellin 11
FMN-linked oxidoreductases Calcium ATPase, transmembrane domain M 11
GroEL-intermediate domain like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NAD(P)-binding Rossmann-fold domains alpha/beta-Hydrolases 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Tricorn protease N-terminal domain DPP6 N-terminal domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Translation proteins PRC-barrel domain 11
NTF2-like beta-lactamase/transpeptidase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Acetyl-CoA synthetase-like PLP-dependent transferases 11
Zinc beta-ribbon DNA primase core 11
beta-lactamase/transpeptidase-like P-loop containing nucleoside triphosphate hydrolases 11
PP2C-like TPR-like 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Class II aaRS and biotin synthetases SufE/NifU 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
TGS-like ACT-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
YajQ-like YajQ-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
HAMP domain-like GAF domain-like 11
PreATP-grasp domain post-HMGL domain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Sigma2 domain of RNA polymerase sigma factors Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
ACP-like beta-lactamase/transpeptidase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Galactose-binding domain-like (Trans)glycosidases 11
Collagen-binding domain alpha/beta-Hydrolases 11
Tex N-terminal region-like RuvA domain 2-like 11
Thiolase-like PLP-dependent transferases 11
Rudiment single hybrid motif post-HMGL domain-like 11
Globin-like Riboflavin synthase domain-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 11
PK C-terminal domain-like Phosphohistidine domain 11
E set domains Carbohydrate binding domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
HAMP domain-like CheY-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
Concanavalin A-like lectins/glucanases Invasin/intimin cell-adhesion fragments 11
CoA-dependent acyltransferases beta-lactamase/transpeptidase-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
PH0987 N-terminal domain-like Cyclophilin-like 11
HD-domain/PDEase-like ACT-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
DNA methylase specificity domain DNA methylase specificity domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
RuvA domain 2-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Putative DNA-binding domain Periplasmic binding protein-like II 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
RmlC-like cupins Homeodomain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Nucleotide-diphospho-sugar transferases Phosphoglucomutase, C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Bacterial adhesins Bacterial adhesins 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
(Trans)glycosidases Galactose mutarotase-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
post-HMGL domain-like Single hybrid motif 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
CheY-like Nucleotide cyclase 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Formyltransferase Acetyl-CoA synthetase-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
delta-Endotoxin (insectocide), N-terminal domain Galactose-binding domain-like 11
ACP-like PLP-dependent transferases 11
Chitinase insertion domain Carbohydrate binding domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Peptide methionine sulfoxide reductase Mss4-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
FabD/lysophospholipase-like FMN-linked oxidoreductases 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
Periplasmic binding protein-like II ACT-like 11
Fibronectin type III Fibronectin type III 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
SacY-like RNA-binding domain PTS-regulatory domain, PRD 11
CheY-like CheY-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Subtilisin-like Collagen-binding domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Formyltransferase CoA-dependent acyltransferases 11
"Winged helix" DNA-binding domain PTS system fructose IIA component-like 11
NAD(P)-binding Rossmann-fold domains Homeodomain-like 11
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 11
P-loop containing nucleoside triphosphate hydrolases Metallo-dependent phosphatases 11
CoA-dependent acyltransferases Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
PIN domain-like Ribonuclease H-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
DNA repair protein MutS, domain III SMR domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
AbrB/MazE/MraZ-like GAF domain-like 11
PLP-dependent transferases CoA-dependent acyltransferases 11
DHS-like NAD/FAD-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PIN domain-like DNA/RNA polymerases 11
Galactose-binding domain-like Galactose mutarotase-like 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
vWA-like Class I glutamine amidotransferase-like 11
SH3-domain Zn-dependent exopeptidases 11
NAD(P)-binding Rossmann-fold domains Nucleotide-binding domain 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Lysozyme-like Fibronectin type III 11
Nucleotidylyl transferase tRNA-binding arm 11
Acyl-CoA N-acyltransferases (Nat) YjgF-like 11
Aldolase AFP III-like domain 11
Calcium-dependent phosphotriesterase Sensory domain-like 11
HAMP domain-like HD-domain/PDEase-like 11
PYP-like sensor domain (PAS domain) CheY-like 11
Nucleotidyltransferase TGS-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Lamin A/C globular tail domain DNase I-like 11
PGBD-like PR-1-like 11
Families 57/38 glycoside transferase middle domain UDP-Glycosyltransferase/glycogen phosphorylase 11
FliG FliG 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
GAF domain-like GAF domain-like 11
DNA clamp DNA clamp 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
RuvA domain 2-like BRCT domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
NAD(P)-binding Rossmann-fold domains GAF domain-like 11
Tricorn protease N-terminal domain Tricorn protease N-terminal domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
Bacterial adhesins Cna protein B-type domain 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Zinc beta-ribbon N-terminal domain of DnaB helicase 11
Trimeric LpxA-like enzymes Phosphoglucomutase, C-terminal domain 11
Nucleotidyltransferase ACT-like 11
NTF2-like Penicillin binding protein dimerisation domain 11
PreATP-grasp domain Single hybrid motif 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
GAF domain-like PYP-like sensor domain (PAS domain) 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
PTS-regulatory domain, PRD PTS system fructose IIA component-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase FMN-linked oxidoreductases 11
CBS-domain pair ACT-like 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
ACP-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
P-loop containing nucleoside triphosphate hydrolases HD-domain/PDEase-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins BRCT domain 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Flavoproteins Riboflavin synthase domain-like 11
Aldolase Single hybrid motif 11
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 11
Acyl-CoA N-acyltransferases (Nat) Thioredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
ACT-like Formyltransferase 11
P-loop containing nucleoside triphosphate hydrolases PTS system fructose IIA component-like 11
LysM domain (Trans)glycosidases 11
Invasin/intimin cell-adhesion fragments RCC1/BLIP-II 11
Metalloproteases ("zincins"), catalytic domain Copper amine oxidase, domain N 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Tetrapyrrole methylase Nitrite and sulphite reductase 4Fe-4S domain-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Adenine nucleotide alpha hydrolases-like P-loop containing nucleoside triphosphate hydrolases 11
alpha/beta-Hydrolases FMN-dependent nitroreductase-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
"Winged helix" DNA-binding domain Ribokinase-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Hsp33 domain HSP33 redox switch-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
"Winged helix" DNA-binding domain PRTase-like 11
Translation proteins Translation proteins 11
MoaD/ThiS Molybdopterin synthase subunit MoaE 11
FAD-binding/transporter-associated domain-like DmpA/ArgJ-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Tetrapyrrole methylase HemD-like 11
Metalloproteases ("zincins"), catalytic domain Galactose-binding domain-like 11
E set domains Fibronectin type III 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
HD-domain/PDEase-like TGS-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
4Fe-4S ferredoxins ARM repeat 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
PA domain Zn-dependent exopeptidases 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
EAL domain-like CBS-domain pair 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
PHP domain-like RuvA domain 2-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
GAF domain-like Homeodomain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Thioredoxin-like Thioredoxin-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
UROD/MetE-like UROD/MetE-like 11
Carbamate kinase-like PUA domain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
LysM domain Cysteine proteinases 11
Tropomyosin Duplicated hybrid motif 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
Ribonuclease H-like TPR-like 11
Nucleotide cyclase DHH phosphoesterases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
ClpP/crotonase PGBD-like 11
Carboxypeptidase regulatory domain-like Carboxypeptidase regulatory domain-like 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Nudix 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
E set domains Carboxypeptidase regulatory domain-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
TGS-like Class II aaRS and biotin synthetases 11
RuvA domain 2-like JAB1/MPN domain 11
Acyl-CoA N-acyltransferases (Nat) SCP-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
TPR-like SMI1/KNR4-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 11
PUA domain-like alpha/beta knot 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Carboxypeptidase regulatory domain-like Starch-binding domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
PheT/TilS domain Putative DNA-binding domain 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
"Winged helix" DNA-binding domain DnaD domain-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
NAD(P)-binding Rossmann-fold domains PYP-like sensor domain (PAS domain) 11
PK beta-barrel domain-like Phosphohistidine domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Rubredoxin-like S-adenosyl-L-methionine-dependent methyltransferases 11
Hypothetical protein SAV1430 ARM repeat 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Cupredoxins Cytochrome c 11
DNA-glycosylase Nudix 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
GAF domain-like CheY-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Subtilisin-like RCC1/BLIP-II 11
HAMP domain-like Nucleotide cyclase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
beta-lactamase/transpeptidase-like Fibronectin type III 11
Tex N-terminal region-like Ribonuclease H-like 11
beta-lactamase/transpeptidase-like ABC transporter transmembrane region 11
E set domains E set domains 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
PreATP-grasp domain Aldolase 11
P-loop containing nucleoside triphosphate hydrolases PTS-regulatory domain, PRD 11
Protein kinase-like (PK-like) GAF domain-like 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Nucleic acid-binding proteins GAD domain-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Carbohydrate binding domain Carbohydrate binding domain 11
LysM domain Duplicated hybrid motif 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Calcium-dependent phosphotriesterase HAMP domain-like 11

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