SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Variovorax paradoxus S110

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

781 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1532
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4617
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4516
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 353
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 354
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 336
CheY-like C-terminal effector domain of the bipartite response regulators 324
Thioredoxin-like GST C-terminal domain-like 283
Homeodomain-like Homeodomain-like 287
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 273
"Winged helix" DNA-binding domain GAF domain-like 252
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 258
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 234
GroES-like NAD(P)-binding Rossmann-fold domains 212
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 206
Thiolase-like Thiolase-like 192
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 195
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 176
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 173
Actin-like ATPase domain Actin-like ATPase domain 163
P-loop containing nucleoside triphosphate hydrolases MOP-like 152
Enolase N-terminal domain-like Enolase C-terminal domain-like 151
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 153
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 159
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 144
lambda repressor-like DNA-binding domains RmlC-like cupins 141
cAMP-binding domain-like "Winged helix" DNA-binding domain 141
ISP domain Bet v1-like 134
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 131
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 132
Phospholipase D/nuclease Phospholipase D/nuclease 126
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 125
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 126
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 116
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 116
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 111
Homodimeric domain of signal transducing histidine kinase CheY-like 115
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 105
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 104
Cytochrome c Cytochrome c 106
(Trans)glycosidases Glycosyl hydrolase domain 105
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 105
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 105
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 104
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 105
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 105
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 104
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 108
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 102
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 104
Phage tail proteins Phage tail proteins 92
Phage tail proteins Phage fibre proteins 92
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 91
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 97
Phage tail proteins gp5 N-terminal domain-like 92
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 93
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 97
gp5 N-terminal domain-like Phage fibre proteins 92
"Winged helix" DNA-binding domain PLP-dependent transferases 91
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
PreATP-grasp domain Rudiment single hybrid motif 93
CheY-like Homeodomain-like 84
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 85
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 83
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 83
"Winged helix" DNA-binding domain Chorismate lyase-like 71
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 71
PYP-like sensor domain (PAS domain) Nucleotide cyclase 77
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 74
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 77
Pentapeptide repeat-like Pentapeptide repeat-like 73
Calcium ATPase, transmembrane domain M HAD-like 65
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 65
Alpha-L RNA-binding motif Pseudouridine synthase 62
Homeodomain-like SIS domain 61
Regulatory protein AraC Homeodomain-like 62
Acetyl-CoA synthetase-like ACP-like 66
Calcium ATPase, transduction domain A HAD-like 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 63
CheY-like P-loop containing nucleoside triphosphate hydrolases 62
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 53
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 55
Class I glutamine amidotransferase-like Homeodomain-like 52
GAF domain-like Homeodomain-like 53
E set domains (Trans)glycosidases 53
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 53
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 53
CoA-dependent acyltransferases ACP-like 55
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 53
ClpP/crotonase ClpP/crotonase 53
PurM N-terminal domain-like PurM C-terminal domain-like 52
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 53
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 52
Translation proteins EF-G C-terminal domain-like 53
CoA-dependent acyltransferases CoA-dependent acyltransferases 55
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 54
Cupredoxins Cytochrome c 42
Lysozyme-like beta-lactamase/transpeptidase-like 43
ACP-like ACP-like 44
ParB/Sulfiredoxin KorB DNA-binding domain-like 42
RmlC-like cupins Homeodomain-like 42
ACT-like ACT-like 44
Glutathione synthetase ATP-binding domain-like Single hybrid motif 42
Nucleotide cyclase EAL domain-like 44
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 42
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 42
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 42
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 42
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 43
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 43
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 44
Homeodomain-like Ribonuclease H-like 42
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 42
PreATP-grasp domain Single hybrid motif 42
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 42
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 42
Single hybrid motif CoA-dependent acyltransferases 42
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
E set domains Glycosyl hydrolase domain 42
Rudiment single hybrid motif Single hybrid motif 42
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 42
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 42
Triger factor/SurA peptide-binding domain-like FKBP-like 44
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 31
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 32
Trypsin-like serine proteases PDZ domain-like 32
GAF domain-like Homodimeric domain of signal transducing histidine kinase 33
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 31
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 31
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 31
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
Nqo1 middle domain-like Nqo1C-terminal domain-like 33
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Pectin lyase-like Autotransporter 32
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
TPR-like TPR-like 33
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
PYP-like sensor domain (PAS domain) EAL domain-like 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
HD-domain/PDEase-like Nucleotidyltransferase 33
HMA, heavy metal-associated domain HAD-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 32
LeuD/IlvD-like Aconitase iron-sulfur domain 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
alpha/beta-Hydrolases Galactose-binding domain-like 33
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 32
PYP-like sensor domain (PAS domain) CheY-like 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 32
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 21
ACP-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Translation proteins ThrRS/AlaRS common domain 22
4Fe-4S ferredoxins ADC-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 22
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 22
Pectin lyase-like Pectin lyase-like 21
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 22
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Thioredoxin-like Nqo1 FMN-binding domain-like 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
Heme-dependent catalase-like Class I glutamine amidotransferase-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Adhesin YadA, collagen-binding domain Pili subunits 22
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 22
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
2Fe-2S ferredoxin-like ADC-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
Ribonuclease H-like DNA/RNA polymerases 22
Nucleotide-diphospho-sugar transferases RmlC-like cupins 22
Thiolase-like FabD/lysophospholipase-like 22
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 21
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
HD-domain/PDEase-like ACT-like 22
Nucleotidyltransferase TGS-like 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 22
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
DinB/YfiT-like putative metalloenzymes C-type lectin-like 21
PK beta-barrel domain-like PK C-terminal domain-like 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
PDZ domain-like PDZ domain-like 21
Sigma2 domain of RNA polymerase sigma factors NTF2-like 21
Thioredoxin-like Nqo1 middle domain-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
PYP-like sensor domain (PAS domain) Homeodomain-like 22
L30e-like alpha/beta knot 21
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 21
PYP-like sensor domain (PAS domain) GAF domain-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
PDZ domain-like ClpP/crotonase 21
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Thioredoxin-like FAD/NAD(P)-binding domain 22
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 22
Thioredoxin-like Nqo1C-terminal domain-like 22
HD-domain/PDEase-like TGS-like 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 21
HAMP domain-like PYP-like sensor domain (PAS domain) 22
Cytochrome P450 Riboflavin synthase domain-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
PH0987 N-terminal domain-like Cyclophilin-like 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
PLP-binding barrel Alanine racemase C-terminal domain-like 22
Nucleotidyltransferase ACT-like 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Flavoproteins Riboflavin synthase domain-like 22
ACP-like Thiolase-like 22
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 21
Single hybrid motif FAD/NAD(P)-binding domain 21
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Nucleic acid-binding proteins Nucleic acid-binding proteins 22
PP2C-like Protein kinase-like (PK-like) 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
HAMP domain-like Nucleotide cyclase 22
Six-hairpin glycosidases MurD-like peptide ligases, peptide-binding domain 22
Nucleotide-binding domain Nucleotide-binding domain 22
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Translation proteins Ribosomal protein S5 domain 2-like 21
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Six-hairpin glycosidases MurD-like peptide ligases, catalytic domain 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
"Winged helix" DNA-binding domain Actin-like ATPase domain 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
ACP-like FabD/lysophospholipase-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
MetI-like MetI-like 22
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
alpha/beta-Hydrolases NTF2-like 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nudix "Winged helix" DNA-binding domain 11
FMN-binding split barrel Riboflavin synthase domain-like 11
CheY-like Nucleotide cyclase 11
PIN domain-like Ribonuclease H-like 11
Rhomboid-like TPR-like 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Carbamate kinase-like PUA domain-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
ACP-like alpha/beta-Hydrolases 11
PrpR receptor domain-like Homeodomain-like 11
Chondroitin AC/alginate lyase Concanavalin A-like lectins/glucanases 11
TATA-box binding protein-like DNA-glycosylase 11
Thioesterase/thiol ester dehydrase-isomerase Acyl-CoA N-acyltransferases (Nat) 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
PurS-like FGAM synthase PurL, linker domain 11
UraD-Like Bacterial exopeptidase dimerisation domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
SMAD/FHA domain Formin homology 2 domain (FH2 domain) 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Acetyl-CoA synthetase-like FabD/lysophospholipase-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
HlyD-like secretion proteins Outer membrane efflux proteins (OEP) 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Tex N-terminal region-like Ribonuclease H-like 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
PurS-like PurM N-terminal domain-like 11
PKD domain Nitrous oxide reductase, N-terminal domain 11
PPK N-terminal domain-like PHP14-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Nitrous oxide reductase, N-terminal domain Cytochrome c 11
PurS-like Class I glutamine amidotransferase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
TolA/TonB C-terminal domain Formin homology 2 domain (FH2 domain) 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Nucleic acid-binding proteins NAD(P)-binding Rossmann-fold domains 11
FMN-binding split barrel 2Fe-2S ferredoxin-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Rhodanese/Cell cycle control phosphatase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Concanavalin A-like lectins/glucanases Cytochrome c 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
GAF domain-like CheY-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Acetyl-CoA synthetase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Translation proteins 11
Nucleotide-diphospho-sugar transferases Trm112p-like 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
Sensory domain-like Nucleotide cyclase 11
GroES-like GroES-like 11
Carbamate kinase-like ACT-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
CarD-like TRCF domain-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Calcium-dependent phosphotriesterase NHL repeat 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
2Fe-2S ferredoxin-like Bet v1-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
TGS-like ACT-like 11
PHP domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Galactose mutarotase-like Galactose mutarotase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Nudix Metallo-hydrolase/oxidoreductase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
PreATP-grasp domain PreATP-grasp domain 11
HAMP domain-like EAL domain-like 11
Putative DNA-binding domain Translation proteins 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Protein kinase-like (PK-like) GAF domain-like 11
Calcium-dependent phosphotriesterase Tricorn protease N-terminal domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Quinoprotein alcohol dehydrogenase-like Cytochrome c 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Cupredoxins 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Phase 1 flagellin Phase 1 flagellin 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
RuvA domain 2-like BRCT domain 11
Macro domain-like Zn-dependent exopeptidases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
UDP-Glycosyltransferase/glycogen phosphorylase Trm112p-like 11
RuvA domain 2-like RuvA domain 2-like 11
Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Protein kinase-like (PK-like) Homodimeric domain of signal transducing histidine kinase 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
Acetyl-CoA synthetase-like Thiolase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Hsp33 domain HSP33 redox switch-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Prokaryotic type I DNA topoisomerase SWIB/MDM2 domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
CO dehydrogenase ISP C-domain like Bet v1-like 11
UROD/MetE-like UROD/MetE-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Single hybrid motif ClpP/crotonase 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Galactose-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
PHP14-like Phospholipase D/nuclease 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
TPR-like Acid proteases 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Nucleotidylyl transferase Nudix 11
SMAD/FHA domain SMAD/FHA domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
vWA-like Quinoprotein alcohol dehydrogenase-like 11
RmlC-like cupins Rhodanese/Cell cycle control phosphatase 11
DNA clamp DNA clamp 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Aldolase post-HMGL domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Nucleotidylyl transferase YegP-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
RmlC-like cupins RmlC-like cupins 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
CO dehydrogenase molybdoprotein N-domain-like Cytochrome c 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Cadherin-like Cadherin-like 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Molybdenum cofactor-binding domain Cytochrome c 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
YajQ-like YajQ-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
EPT/RTPC-like P-loop containing nucleoside triphosphate hydrolases 11
TGS-like Class II aaRS and biotin synthetases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
E set domains E set domains 11
Ribonuclease H-like RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Acetyl-CoA synthetase-like PLP-dependent transferases 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
"Winged helix" DNA-binding domain Calcium-dependent phosphotriesterase 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
YrdC/RibB RibA-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins BRCT domain 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
GAF domain-like Nucleotide cyclase 11
Cytochrome P450 Flavoproteins 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
ACP-like PLP-dependent transferases 11
PurS-like PurM C-terminal domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Metallo-dependent phosphatases MurD-like peptide ligases, peptide-binding domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Chorismate mutase II ACT-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Nucleic acid-binding proteins GAD domain-like 11
Phage fibre proteins Phage fibre proteins 11
Cytochrome P450 2Fe-2S ferredoxin-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Globin-like Riboflavin synthase domain-like 11
Cadherin-like vWA-like 11
YgfB-like Sec-C motif 11
Nucleotide-diphospho-sugar transferases Outer membrane efflux proteins (OEP) 11
Periplasmic binding protein-like II MetI-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
ACT-like Formyltransferase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Nitrous oxide reductase, N-terminal domain Ricin B-like lectins 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
PIN domain-like DNA/RNA polymerases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like EAL domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like FAD/NAD(P)-binding domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Homeodomain-like DNA-glycosylase 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Translation proteins Translation proteins 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
alpha/beta-Hydrolases Fibronectin type III 11
GAF domain-like Calcium-dependent phosphotriesterase 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
RuvA domain 2-like JAB1/MPN domain 11
Chondroitin AC/alginate lyase Fibronectin type III 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
PKD domain Cytochrome c 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
FliG FliG 11
Restriction endonuclease-like Zinc beta-ribbon 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
alpha/beta-Hydrolases OsmC-like 11
Bacterial muramidases Lysozyme-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
UraD-Like Zn-dependent exopeptidases 11
TGS-like Class II aaRS ABD-related 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Barwin-like endoglucanases Sporulation related repeat 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Single hybrid motif Single hybrid motif 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
CheY-like EAL domain-like 11
FAD-linked oxidoreductase ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Homeodomain-like TATA-box binding protein-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Translation proteins PRC-barrel domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
YjeF N-terminal domain-like Ribokinase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Galactose oxidase, central domain E set domains 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Barwin-like endoglucanases Barwin-like endoglucanases 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Periplasmic binding protein-like II ACT-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
cAMP-binding domain-like FAD/NAD(P)-binding domain 11
PheT/TilS domain Putative DNA-binding domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Thioredoxin-like TPR-like 11
Six-hairpin glycosidases Metallo-dependent phosphatases 11
TPR-like NTF2-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Thiolase-like PLP-dependent transferases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Zinc beta-ribbon DNA primase core 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
Rudiment single hybrid motif ClpP/crotonase 11
RNase III domain-like dsRNA-binding domain-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Concanavalin A-like lectins/glucanases PKD domain 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Class I glutamine amidotransferase-like ADC synthase 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
FKBP-like FKBP-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Isochorismatase-like hydrolases Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
L domain-like Protein kinase-like (PK-like) 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases Trm112p-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
CheC-like Surface presentation of antigens (SPOA) 11
Cytochrome c Ricin B-like lectins 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
beta-Roll beta-Roll 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Lysozyme-like PGBD-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
MalF N-terminal region-like MetI-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Galactose mutarotase-like E set domains 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
CheY-binding domain of CheA CheW-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Clc chloride channel CBS-domain pair 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
PreATP-grasp domain ClpP/crotonase 11
Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
CheW-like CheY-like 11
Formyltransferase FMT C-terminal domain-like 11
Cytidine deaminase-like alpha/beta-Hydrolases 11
Pili subunits GspK insert domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Concanavalin A-like lectins/glucanases Ricin B-like lectins 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Cupredoxins Cupredoxins 11
DNA-glycosylase Nudix 11
Thiolase-like Heme oxygenase-like 11
PUA domain-like alpha/beta knot 11
C-terminal effector domain of the bipartite response regulators TPR-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PreATP-grasp domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
Ribonuclease H-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase PLP-dependent transferases 11
NTF2-like NTF2-like 11
Fibronectin type III Concanavalin A-like lectins/glucanases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
TGS-like ThrRS/AlaRS common domain 11
FMN-binding split barrel GntR ligand-binding domain-like 11
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Thioredoxin-like Thioredoxin-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
(Trans)glycosidases (Trans)glycosidases 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Class II aaRS and biotin synthetases GAD domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Metallo-dependent phosphatases MurD-like peptide ligases, catalytic domain 11
PLP-dependent transferases PLP-dependent transferases 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Concanavalin A-like lectins/glucanases Nitrous oxide reductase, N-terminal domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
FabD/lysophospholipase-like PLP-dependent transferases 11
NTF2-like FAD/NAD(P)-binding domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Nucleotide cyclase SMAD/FHA domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Nucleotidylyl transferase tRNA-binding arm 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
PKD domain Ricin B-like lectins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Fe,Mn superoxide dismutase (SOD), C-terminal domain Rhodanese/Cell cycle control phosphatase 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11

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