SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Paracoccus denitrificans PD1222

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

679 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 583
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4317
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3011
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 274
P-loop containing nucleoside triphosphate hydrolases MOP-like 251
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 236
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 227
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 195
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 193
Homeodomain-like Homeodomain-like 183
Thioredoxin-like GST C-terminal domain-like 182
GroES-like NAD(P)-binding Rossmann-fold domains 173
Actin-like ATPase domain Actin-like ATPase domain 175
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 165
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 164
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 163
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 161
CheY-like C-terminal effector domain of the bipartite response regulators 163
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 154
"Winged helix" DNA-binding domain GAF domain-like 151
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 131
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 136
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 123
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 114
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 114
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 111
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 101
beta-Roll beta-Roll 107
Thiolase-like Thiolase-like 102
MetI-like MetI-like 92
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 91
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 95
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 85
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 83
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 84
CheY-like P-loop containing nucleoside triphosphate hydrolases 82
CheY-like Homeodomain-like 82
P-loop containing nucleoside triphosphate hydrolases Translation proteins 87
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 84
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 82
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 84
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 84
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 75
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 72
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 74
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
Calcium ATPase, transduction domain A HAD-like 75
PreATP-grasp domain Rudiment single hybrid motif 73
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 73
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 72
Class I glutamine amidotransferase-like Homeodomain-like 72
Cytochrome c Cytochrome c 75
HAD-like Calcium ATPase, transmembrane domain M 75
"Winged helix" DNA-binding domain PLP-dependent transferases 61
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 63
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 65
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 66
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 65
Homodimeric domain of signal transducing histidine kinase CheY-like 65
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 62
Triger factor/SurA peptide-binding domain-like FKBP-like 53
cAMP-binding domain-like "Winged helix" DNA-binding domain 51
Homeodomain-like SIS domain 52
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 54
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 52
"Winged helix" DNA-binding domain Chorismate lyase-like 51
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 52
Folate-binding domain Aminomethyltransferase beta-barrel domain 53
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
ISP domain Bet v1-like 52
PLP-binding barrel Alanine racemase C-terminal domain-like 51
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 41
Lysozyme-like PGBD-like 42
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 43
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 42
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 42
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 41
TrkA C-terminal domain-like TrkA C-terminal domain-like 42
CBS-domain pair FAD-binding/transporter-associated domain-like 41
HMA, heavy metal-associated domain HAD-like 43
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 41
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 42
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 41
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 42
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
lambda repressor-like DNA-binding domains RmlC-like cupins 41
FAD/NAD(P)-binding domain Folate-binding domain 42
Glutathione synthetase ATP-binding domain-like Single hybrid motif 42
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 43
Rudiment single hybrid motif Single hybrid motif 42
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 42
PreATP-grasp domain Single hybrid motif 42
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 44
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 43
Enolase N-terminal domain-like Enolase C-terminal domain-like 41
PurM N-terminal domain-like PurM C-terminal domain-like 42
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 43
Single hybrid motif CoA-dependent acyltransferases 43
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 43
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Acetyl-CoA synthetase-like ACP-like 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
ACT-like ACT-like 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
Lysozyme-like beta-lactamase/transpeptidase-like 32
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 32
DNA clamp DNA clamp 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
HlyD-like secretion proteins HlyD-like secretion proteins 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
PYP-like sensor domain (PAS domain) CheY-like 33
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 33
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
ParB/Sulfiredoxin KorB DNA-binding domain-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
Translation proteins EF-G C-terminal domain-like 33
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 32
PDZ domain-like PDZ domain-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
Aconitase iron-sulfur domain LeuD/IlvD-like 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
Galactose mutarotase-like E set domains 31
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
RuvA domain 2-like Nucleic acid-binding proteins 33
CoA-dependent acyltransferases CoA-dependent acyltransferases 33
Phospholipase D/nuclease Phospholipase D/nuclease 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Actin-like ATPase domain HD-domain/PDEase-like 21
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Formyltransferase FMT C-terminal domain-like 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
ClpP/crotonase ClpP/crotonase 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 22
ACT-like Formyltransferase 21
FAD-linked reductases, C-terminal domain Folate-binding domain 21
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 22
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
ACP-like alpha/beta-Hydrolases 22
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
GroEL equatorial domain-like GroEL apical domain-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Caspase-like HCP-like 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
GroEL equatorial domain-like GroEL-intermediate domain like 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
E set domains E set domains 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
PGBD-like L,D-transpeptidase catalytic domain-like 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
E set domains Glycosyl hydrolase domain 22
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 21
Resolvase-like Homeodomain-like 21
GAF domain-like Homeodomain-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
GroEL-intermediate domain like GroEL apical domain-like 21
Nucleotidyltransferase ACT-like 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
FAD/NAD(P)-binding domain Thioredoxin-like 22
CoA-dependent acyltransferases ACP-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 21
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
beta-Roll Hedgehog/intein (Hint) domain 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Alpha-L RNA-binding motif Pseudouridine synthase 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
FMN-binding split barrel UbiD C-terminal domain-like 22
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
E set domains (Trans)glycosidases 22
PH0987 N-terminal domain-like Cyclophilin-like 22
Trypsin-like serine proteases PDZ domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
TPR-like TPR-like 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Zinc beta-ribbon DNA primase core 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
(Trans)glycosidases Glycosyl hydrolase domain 22
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
ABC transporter transmembrane region ABC transporter transmembrane region 11
PreATP-grasp domain post-HMGL domain-like 11
Cyclophilin-like Cyclophilin-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Aldolase Single hybrid motif 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Phage tail proteins Phage fibre proteins 11
C-terminal effector domain of the bipartite response regulators TPR-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
GIY-YIG endonuclease RuvA domain 2-like 11
Thiolase-like ACP-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Carboxypeptidase regulatory domain-like Subtilisin-like 11
Sensory domain-like HAMP domain-like 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Nucleotidylyl transferase tRNA-binding arm 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
YjeF N-terminal domain-like Ribokinase-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
TPR-like HCP-like 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Nucleotide-binding domain Nucleotide-binding domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Activating enzymes of the ubiquitin-like proteins Rhodanese/Cell cycle control phosphatase 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like alpha/beta knot 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
Poly A polymerase C-terminal region-like ACT-like 11
TerB-like Chaperone J-domain 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Ankyrin repeat Sigma2 domain of RNA polymerase sigma factors 11
Transmembrane di-heme cytochromes YceI-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
HD-domain/PDEase-like ACT-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
TGS-like ThrRS/AlaRS common domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
CheY-like PP2C-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
PreATP-grasp domain Aldolase 11
Cytochrome c E set domains 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Thioredoxin-like Nqo1C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Ribosomal protein L6 Ribosomal protein L6 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
HD-domain/PDEase-like TGS-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
RmlC-like cupins Homeodomain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PHP14-like Phospholipase D/nuclease 11
Glycoside hydrolase/deacetylase UraD-Like 11
TGS-like Class II aaRS ABD-related 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Thioesterase/thiol ester dehydrase-isomerase Periplasmic binding protein-like II 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
EspE N-terminal domain-like Nucleotide-diphospho-sugar transferases 11
PIN domain-like Ribonuclease H-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
NAD(P)-binding Rossmann-fold domains Thioesterase/thiol ester dehydrase-isomerase 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Single hybrid motif Single hybrid motif 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
CarD-like TRCF domain-like 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Bet v1-like Bet v1-like 11
Formyltransferase Acetyl-CoA synthetase-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Porins Porins 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PUA domain-like Nucleotidylyl transferase 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Collagen-binding domain Metalloproteases ("zincins"), catalytic domain 11
Translation proteins PRC-barrel domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
4Fe-4S ferredoxins ADC-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PheT/TilS domain Putative DNA-binding domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
alpha/beta-Hydrolases TPR-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Galactose mutarotase-like Galactose mutarotase-like 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
DeoB insert domain-like Alkaline phosphatase-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 11
Rudiment single hybrid motif post-HMGL domain-like 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Cytochrome c Quinohemoprotein amine dehydrogenase A chain, domain 3 11
Homocysteine S-methyltransferase Methionine synthase domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Bacterial muramidases Lysozyme-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
ALDH-like ALDH-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Dimeric alpha+beta barrel Flavoproteins 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
RuvA domain 2-like RuvA domain 2-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
DNA-glycosylase Nudix 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Acetyl-CoA synthetase-like Bacterial luciferase-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Trigger factor ribosome-binding domain FKBP-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Phosphotyrosine protein phosphatases I Thioredoxin-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Rudiment single hybrid motif Aldolase 11
Nucleotidyltransferase Nucleotidyltransferase 11
FabD/lysophospholipase-like ACP-like 11
CheY-like CheY-like 11
Carbamate kinase-like ACT-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Translation proteins ThrRS/AlaRS common domain 11
Ribonuclease H-like DNA/RNA polymerases 11
Aldolase AFP III-like domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Translation proteins Translation proteins 11
LysM domain Duplicated hybrid motif 11
HRDC-like HRDC-like 11
Single hybrid motif alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Carbamate kinase-like PUA domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
PreATP-grasp domain PreATP-grasp domain 11
Nucleic acid-binding proteins GAD domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 11
PR-1-like beta-Roll 11
FAD-linked oxidoreductase ALDH-like 11
PGBD-like PGBD-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Ribonuclease H-like RuvA domain 2-like 11
Single hybrid motif TK C-terminal domain-like 11
FliG FliG 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
PDZ domain-like ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
YgfB-like Sec-C motif 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
gp5 N-terminal domain-like Phage fibre proteins 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Tex N-terminal region-like Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
PK beta-barrel domain-like PK C-terminal domain-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Formyltransferase ACP-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
CheY-like Nucleotide cyclase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, catalytic domain 11
Formyltransferase Bacterial luciferase-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Ribonuclease H-like Nucleic acid-binding proteins 11
TGS-like ACT-like 11
2Fe-2S ferredoxin-like ADC-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
YebC-like PFL-like glycyl radical enzymes 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Chelatase Chelatase 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
GAF domain-like Phosphohistidine domain 11
TGS-like Class II aaRS and biotin synthetases 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Bacterial luciferase-like ACP-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Tex N-terminal region-like RuvA domain 2-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
FMT C-terminal domain-like Acetyl-CoA synthetase-like 11
NAD(P)-binding Rossmann-fold domains MurD-like peptide ligases, peptide-binding domain 11
Band 7/SPFH domain Enolase N-terminal domain-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Metallo-dependent phosphatases MurD-like peptide ligases, peptide-binding domain 11
Flavoproteins Riboflavin synthase domain-like 11
Glutathione synthetase ATP-binding domain-like NAD(P)-binding Rossmann-fold domains 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Hsp33 domain HSP33 redox switch-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
dUTPase-like dUTPase-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
YVTN repeat-like/Quinoprotein amine dehydrogenase 3-carboxy-cis,cis-mucoante lactonizing enzyme 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
YrdC/RibB RibA-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
RuvA domain 2-like JAB1/MPN domain 11
Serine metabolism enzymes domain ACT-like 11
Radical SAM enzymes RuvA domain 2-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Phage tail proteins Phage tail proteins 11
Dimeric alpha+beta barrel Acyl-CoA N-acyltransferases (Nat) 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
FabD/lysophospholipase-like alpha/beta-Hydrolases 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Metallo-dependent phosphatases MurD-like peptide ligases, catalytic domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Translation proteins "Winged helix" DNA-binding domain 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
FAD-linked reductases, C-terminal domain Thioredoxin-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Fic-like "Winged helix" DNA-binding domain 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Class II aaRS and biotin synthetases Translation proteins 11
L30e-like alpha/beta knot 11
Quinohemoprotein amine dehydrogenase A chain, domain 3 E set domains 11
Thioredoxin-like TPR-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Voltage-gated potassium channels Periplasmic binding protein-like II 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
cAMP-binding domain-like CBS-domain pair 11
FMT C-terminal domain-like Bacterial luciferase-like 11
C-terminal effector domain of the bipartite response regulators alpha/beta-Hydrolases 11
FMT C-terminal domain-like ACP-like 11
Phage fibre proteins Phage fibre proteins 11
RuvA domain 2-like BRCT domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PYP-like sensor domain (PAS domain) Ribonuclease H-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains alpha/beta-Hydrolases 11
Caspase-like TPR-like 11
Nucleotidyltransferase TGS-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
TPR-like "Winged helix" DNA-binding domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Aldolase post-HMGL domain-like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
PIN domain-like DNA/RNA polymerases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase alpha/beta-Hydrolases 11
LysM domain LysM domain 11
YlxR-like L30e-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Ribonuclease H-like HRDC-like 11
GroES-like GroES-like 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
CBS-domain pair MgtE membrane domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase alpha/beta-Hydrolases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
post-HMGL domain-like Single hybrid motif 11
Phage tail proteins gp5 N-terminal domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Thiolase-like alpha/beta-Hydrolases 11
Nucleotide cyclase TPR-like 11
FMN-dependent nitroreductase-like Multidrug resistance efflux transporter EmrE 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Thiolase-like FabD/lysophospholipase-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Periplasmic binding protein-like II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
HAD-like PRTase-like 11
PHP domain-like AF1531-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PPK N-terminal domain-like PHP14-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
DinB/YfiT-like putative metalloenzymes SCP-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Regulatory protein AraC Homeodomain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Nucleic acid-binding proteins BRCT domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Globin-like Riboflavin synthase domain-like 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
MFS general substrate transporter MFS general substrate transporter 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
RNase III domain-like dsRNA-binding domain-like 11
Thioredoxin-like Nqo1 middle domain-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Collagen-binding domain beta-Roll 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Ankyrin repeat Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Class II aaRS and biotin synthetases GAD domain-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
PLP-dependent transferases PLP-dependent transferases 11

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