SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Shewanella loihica PV-4

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

796 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 501
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3618
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2211
CheY-like C-terminal effector domain of the bipartite response regulators 221
Nucleotide cyclase EAL domain-like 2112
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 194
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 173
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1711
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 173
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 173
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 173
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 173
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 147
Actin-like ATPase domain Actin-like ATPase domain 145
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1410
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 125
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 128
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 115
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 113
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 116
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 105
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 108
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 106
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 102
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 103
Thioredoxin-like GST C-terminal domain-like 101
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 102
Homodimeric domain of signal transducing histidine kinase CheY-like 108
PYP-like sensor domain (PAS domain) EAL domain-like 107
PYP-like sensor domain (PAS domain) CheY-like 97
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 92
Thiolase-like Thiolase-like 93
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 99
Homeodomain-like Homeodomain-like 95
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 93
P-loop containing nucleoside triphosphate hydrolases Translation proteins 96
HlyD-like secretion proteins HlyD-like secretion proteins 84
CheY-like Homeodomain-like 83
GAF domain-like Nucleotide cyclase 75
DPP6 N-terminal domain-like alpha/beta-Hydrolases 72
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 75
ACT-like ACT-like 74
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 71
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 75
CheY-like P-loop containing nucleoside triphosphate hydrolases 72
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 73
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 75
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 75
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Phospholipase D/nuclease Phospholipase D/nuclease 65
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 61
GroES-like NAD(P)-binding Rossmann-fold domains 62
PreATP-grasp domain Rudiment single hybrid motif 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 62
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 62
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 62
Alpha-L RNA-binding motif Pseudouridine synthase 61
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 64
PurM N-terminal domain-like PurM C-terminal domain-like 52
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 51
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
(Trans)glycosidases Glycosyl hydrolase domain 54
Translation proteins EF-G C-terminal domain-like 53
CheY-like Histidine-containing phosphotransfer domain, HPT domain 55
EF-G C-terminal domain-like EF-G C-terminal domain-like 53
Cytochrome c Cytochrome c 53
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 52
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 43
TPR-like Nucleotide cyclase 42
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 43
E set domains (Trans)glycosidases 43
TPR-like TPR-like 43
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 42
ClpP/crotonase ClpP/crotonase 44
PDZ domain-like ClpP/crotonase 43
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
GAF domain-like EAL domain-like 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 44
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 43
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 41
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 42
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 43
CBS-domain pair MgtE membrane domain-like 31
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 32
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 32
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
HAD-like Calcium ATPase, transmembrane domain M 33
Single hybrid motif CoA-dependent acyltransferases 33
MgtE N-terminal domain-like MgtE membrane domain-like 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
E set domains Glycosyl hydrolase domain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Translation proteins Ribosomal protein S5 domain 2-like 31
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 31
CheW-like CheY-like 31
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 32
Nucleic acid-binding proteins RuvA domain 2-like 33
2Fe-2S ferredoxin-like alpha-helical ferredoxin 32
Nucleotidyltransferase ACT-like 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
PA domain Subtilisin-like 31
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 33
Calcium ATPase, transduction domain A HAD-like 33
MgtE N-terminal domain-like CBS-domain pair 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
RmlC-like cupins Homeodomain-like 32
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
HCP-like HCP-like 33
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 32
HD-domain/PDEase-like ACT-like 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
Glutathione synthetase ATP-binding domain-like Single hybrid motif 33
Rudiment single hybrid motif Single hybrid motif 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 31
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 32
Nucleotidyltransferase HD-domain/PDEase-like 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
PLP-binding barrel Alanine racemase C-terminal domain-like 31
PreATP-grasp domain Single hybrid motif 33
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Carbamate kinase-like PUA domain-like 21
Regulatory protein AraC Homeodomain-like 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 21
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
CheY-like Nucleotide cyclase 22
Subtilisin-like Galactose-binding domain-like 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Class I glutamine amidotransferase-like Homeodomain-like 21
GAF domain-like GAF domain-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Carboxypeptidase regulatory domain-like Carboxypeptidase regulatory domain-like 22
Ribonuclease H-like DNA/RNA polymerases 22
PYP-like sensor domain (PAS domain) Homeodomain-like 22
Single hybrid motif Single hybrid motif 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 21
Carbamate kinase-like ACT-like 22
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
Trypsin-like serine proteases PDZ domain-like 22
CheY-like CheY-like 22
TGS-like ACT-like 21
TSP type-3 repeat OmpA-like 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Cupredoxins Cupredoxins 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
ClpP/crotonase PreATP-grasp domain 22
CheY-like Methylesterase CheB, C-terminal domain 21
PDZ domain-like PDZ domain-like 22
CheY-like EAL domain-like 22
Metallo-hydrolase/oxidoreductase SCP-like 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
HD-domain/PDEase-like GAF domain-like 22
Zinc beta-ribbon Zinc beta-ribbon 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
Sensory domain-like Nucleotide cyclase 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
GAF domain-like PYP-like sensor domain (PAS domain) 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
cAMP-binding domain-like CBS-domain pair 21
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
Carboxypeptidase regulatory domain-like CalX-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Resolvase-like Homeodomain-like 21
Homodimeric domain of signal transducing histidine kinase CheW-like 21
HMA, heavy metal-associated domain HAD-like 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
CheY-like HD-domain/PDEase-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 21
E set domains E set domains 22
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
Galactose-binding domain-like Galactose-binding domain-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
E set domains Galactose-binding domain-like 22
Calcium-dependent phosphotriesterase PYP-like sensor domain (PAS domain) 22
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 22
Nucleotidyltransferase TGS-like 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
MetI-like MetI-like 21
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 22
HD-domain/PDEase-like TGS-like 21
PA domain Zn-dependent exopeptidases 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Sensory domain-like Sensory domain-like 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
LeuD/IlvD-like Aconitase iron-sulfur domain 22
Sensory domain-like PYP-like sensor domain (PAS domain) 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
HAMP domain-like Nucleotide cyclase 22
ClpP/crotonase Single hybrid motif 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
ClpP/crotonase Rudiment single hybrid motif 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
ClpP/crotonase Glutathione synthetase ATP-binding domain-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
alpha-helical ferredoxin Nucleotide-binding domain 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Periplasmic binding protein-like II ACT-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Sensory domain-like CheY-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
HRDC-like HRDC-like 11
Pili subunits GspK insert domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
EAL domain-like CBS-domain pair 11
TGS-like Class II aaRS and biotin synthetases 11
DPP6 N-terminal domain-like PDZ domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins PheT/TilS domain 11
RuvA domain 2-like RuvA domain 2-like 11
Class II aaRS and biotin synthetases Translation proteins 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Homeodomain-like SIS domain 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Calcium-dependent phosphotriesterase CalX-like 11
Carboxypeptidase regulatory domain-like YWTD domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
RuvA domain 2-like JAB1/MPN domain 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Cytidine deaminase-like Cytidine deaminase-like 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
PLP-dependent transferases Metallo-hydrolase/oxidoreductase 11
Quinoprotein alcohol dehydrogenase-like Nucleotide cyclase 11
Ribonuclease H-like RuvA domain 2-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Six-hairpin glycosidases Six-hairpin glycosidases 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
Invasin/intimin cell-adhesion fragments Sialidases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Protease propeptides/inhibitors Subtilisin-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Galactose-binding domain-like Galactose mutarotase-like 11
3-carboxy-cis,cis-mucoante lactonizing enzyme Cadherin-like 11
Periplasmic binding protein-like II Aldolase 11
Periplasmic binding protein-like II GlnB-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
FliG FliG 11
GAF domain-like Phosphohistidine domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Lamin A/C globular tail domain His-Me finger endonucleases 11
Chorismate mutase II Periplasmic binding protein-like II 11
Zn-dependent exopeptidases Class I glutamine amidotransferase-like 11
RuvA domain 2-like BRCT domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
ACP-like ACP-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
YajQ-like YajQ-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Tricorn protease N-terminal domain DPP6 N-terminal domain-like 11
post-HMGL domain-like Single hybrid motif 11
Methionine synthase domain Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
NTF2-like Isochorismatase-like hydrolases 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
DNase I-like PKD domain 11
NTF2-like Sec-C motif 11
Tricorn protease domain 2 alpha/beta-Hydrolases 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Calcium-dependent phosphotriesterase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
TPR-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
PreATP-grasp domain PreATP-grasp domain 11
Tricorn protease N-terminal domain ClpP/crotonase 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
DPP6 N-terminal domain-like Metallo-dependent hydrolases 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
TPR-like P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Six-hairpin glycosidases E set domains 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Invasin/intimin cell-adhesion fragments Kelch motif 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Galactose-binding domain-like (Trans)glycosidases 11
H-NS histone-like proteins H-NS histone-like proteins 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Aldolase Single hybrid motif 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
ClpP/crotonase NfeD domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
P-loop containing nucleoside triphosphate hydrolases Myosin rod fragments 11
Carbohydrate-binding domain (Trans)glycosidases 11
PIN domain-like DNA/RNA polymerases 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
TGS-like Class II aaRS ABD-related 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
MFS general substrate transporter MFS general substrate transporter 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
alpha-helical ferredoxin Formate dehydrogenase/DMSO reductase, domains 1-3 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Tex N-terminal region-like RuvA domain 2-like 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Sensory domain-like HD-domain/PDEase-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
HAD-like Ribosomal protein S5 domain 2-like 11
C-terminal effector domain of the bipartite response regulators DPP6 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
DPP6 N-terminal domain-like ClpP/crotonase 11
alpha/beta-Hydrolases TPR-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
Nucleotide-binding domain ADC-like 11
Aldolase AFP III-like domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Phospholipase D/nuclease PsbU/PolX domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Kelch motif Kelch motif 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
MesJ substrate recognition domain-like PheT/TilS domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
PPK N-terminal domain-like PHP14-like 11
Translation proteins PRC-barrel domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Sensory domain-like Periplasmic binding protein-like II 11
PKD domain PKD domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
"Winged helix" DNA-binding domain Ribokinase-like 11
ACT-like Aldolase 11
Subtilisin-like PKD domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Ribokinase-like Thiamin phosphate synthase 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Nucleic acid-binding proteins GAD domain-like 11
Ribonuclease H-like HRDC-like 11
Thiolase-like FabD/lysophospholipase-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
YWTD domain CalX-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
ACT-like PYP-like sensor domain (PAS domain) 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
L9 N-domain-like Ribonuclease H-like 11
Restriction endonuclease-like "Winged helix" DNA-binding domain 11
Quinoprotein alcohol dehydrogenase-like PYP-like sensor domain (PAS domain) 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Sensory domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
Galactose-binding domain-like PKD domain 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Translation proteins Translation proteins 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
PheT/TilS domain Putative DNA-binding domain 11
PurS-like Class I glutamine amidotransferase-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
P-loop containing nucleoside triphosphate hydrolases Sec-C motif 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PurS-like PurM N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Multiheme cytochromes Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
GAF domain-like Homeodomain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Tex N-terminal region-like Ribonuclease H-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
HisI-like all-alpha NTP pyrophosphatases 11
Lysozyme-like PGBD-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
HIT-like HIT-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins BRCT domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Putative DNA-binding domain Translation proteins 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Hemerythrin-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
PurS-like PurM C-terminal domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
CheC-like Surface presentation of antigens (SPOA) 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Galactose mutarotase-like Six-hairpin glycosidases 11
"Winged helix" DNA-binding domain HRDC-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
DNA primase core DNA primase DnaG, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
L30e-like alpha/beta knot 11
ACT-like Formyltransferase 11
PH0987 N-terminal domain-like Cyclophilin-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
LysM domain L,D-transpeptidase catalytic domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Macro domain-like Zn-dependent exopeptidases 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
ALDH-like Dehydroquinate synthase-like 11
2Fe-2S ferredoxin-like Nucleotide-binding domain 11
PUA domain-like alpha/beta knot 11
WD40 repeat-like MetI-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Carboxypeptidase regulatory domain-like Calcium-dependent phosphotriesterase 11
Aldolase post-HMGL domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
LysM domain LysM domain 11
Nucleotidylyl transferase tRNA-binding arm 11
Cadherin-like Cadherin-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
TGS-like ThrRS/AlaRS common domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Quinoprotein alcohol dehydrogenase-like EAL domain-like 11
Zn-dependent exopeptidases LysM domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
RNase III domain-like dsRNA-binding domain-like 11
Mss4-like Peptide methionine sulfoxide reductase 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
Thiolase-like ACP-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
YjeF N-terminal domain-like Ribokinase-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
PurS-like FGAM synthase PurL, linker domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
GspK insert domain-like GspK insert domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
DPP6 N-terminal domain-like Composite domain of metallo-dependent hydrolases 11
Zinc beta-ribbon DNA primase core 11
Bacterial muramidases Lysozyme-like 11
PLP-dependent transferases PLP-dependent transferases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Chorismate mutase II Aldolase 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Hsp33 domain HSP33 redox switch-like 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
beta-N-acetylhexosaminidase-like domain E set domains 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
Lamin A/C globular tail domain DNase I-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
UROD/MetE-like UROD/MetE-like 11
Subtilisin-like Cadherin-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Multiheme cytochromes FAD/NAD(P)-binding domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
CheY-like CheC-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
4Fe-4S ferredoxins ADC-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
YrdC/RibB RibA-like 11
Tricorn protease N-terminal domain PDZ domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked oxidoreductase ALDH-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
Calcium-dependent phosphotriesterase Nucleotide cyclase 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Flavoproteins Riboflavin synthase domain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
GroES-like GroES-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
(Trans)glycosidases Galactose mutarotase-like 11
Protease propeptides/inhibitors Galactose-binding domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
PHP domain-like AF1531-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
ACT-like Homeodomain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
FKBP-like FKBP-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
PLP-dependent transferases Rhodanese/Cell cycle control phosphatase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Lysozyme-like LysM domain 11
Kelch motif Sialidases 11
Periplasmic binding protein-like II HD-domain/PDEase-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
TATA-box binding protein-like DNA-glycosylase 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
OMPA-like TSP type-3 repeat 11
PreATP-grasp domain Methylglyoxal synthase-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Nucleotide-binding domain Formate dehydrogenase/DMSO reductase, domains 1-3 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
CBS-domain pair Nucleotide cyclase 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Cupredoxins Cytochrome c 11
Ribokinase-like Nucleotidylyl transferase 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
vWA-like beta-Roll 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Pentapeptide repeat-like Voltage-gated potassium channels 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Proton glutamate symport protein Periplasmic binding protein-like II 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
vWA-like TPR-like 11
2Fe-2S ferredoxin-like ADC-like 11
Zn-dependent exopeptidases Fibronectin type III 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
HAMP domain-like EAL domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Clavaminate synthase-like Sec-C motif 11
alpha-helical ferredoxin ADC-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
GroEL equatorial domain-like GroEL apical domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Six-hairpin glycosidases Galactose-binding domain-like 11
CarD-like TRCF domain-like 11
TPR-like Homodimeric domain of signal transducing histidine kinase 11
Calcium-dependent phosphotriesterase EAL domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Pseudouridine synthase PUA domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
ISP domain Bet v1-like 11
PHP14-like Phospholipase D/nuclease 11
GroEL-intermediate domain like GroEL apical domain-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
TPR-like TolA/TonB C-terminal domain 11
Translation proteins ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
GIY-YIG endonuclease RuvA domain 2-like 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
FabD/lysophospholipase-like ACP-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Carbohydrate-binding domain E set domains 11
Homeodomain-like DNA-glycosylase 11
Cadherin-like beta-Roll 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
DNA clamp DNA clamp 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Periplasmic binding protein-like II Lysozyme-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Homeodomain-like TATA-box binding protein-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Thioredoxin-like Thioredoxin-like 11
OMPA-like OmpA-like 11
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
DNA-glycosylase Nudix 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
HAMP domain-like CheY-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
PIN domain-like Ribonuclease H-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Formyltransferase FMT C-terminal domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Phase 1 flagellin Phase 1 flagellin 11
Homeodomain-like Probable bacterial effector-binding domain 11
TPR-like HCP-like 11
Acid proteases Acid proteases 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Chorismate mutase II ACT-like 11
Metalloproteases ("zincins"), catalytic domain PKD domain 11
vWA-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Barwin-like endoglucanases Sporulation related repeat 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11

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