SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Acinetobacter baumannii ATCC 17978

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

567 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 281
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2314
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 222
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 159
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 142
Homeodomain-like Homeodomain-like 145
Actin-like ATPase domain Actin-like ATPase domain 135
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 114
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 117
Thiolase-like Thiolase-like 111
Thioredoxin-like GST C-terminal domain-like 111
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 101
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 95
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 93
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 94
CheY-like C-terminal effector domain of the bipartite response regulators 92
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 95
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 95
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 95
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 84
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 85
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 75
CoA-dependent acyltransferases CoA-dependent acyltransferases 77
P-loop containing nucleoside triphosphate hydrolases Translation proteins 75
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 72
PreATP-grasp domain Rudiment single hybrid motif 74
GroES-like NAD(P)-binding Rossmann-fold domains 71
HlyD-like secretion proteins HlyD-like secretion proteins 72
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 64
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 61
PLP-binding barrel Alanine racemase C-terminal domain-like 61
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 62
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 52
CoA-dependent acyltransferases ACP-like 55
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 51
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 52
ISP domain Bet v1-like 52
Translation proteins EF-G C-terminal domain-like 43
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
Calcium ATPase, transduction domain A HAD-like 43
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 44
Acetyl-CoA synthetase-like ACP-like 44
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 43
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 43
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 41
HAD-like Calcium ATPase, transmembrane domain M 43
beta-Roll beta-Roll 44
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 43
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 33
"Winged helix" DNA-binding domain PLP-dependent transferases 31
Nucleotide cyclase EAL domain-like 33
Single hybrid motif CoA-dependent acyltransferases 33
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 33
Phospholipase D/nuclease Phospholipase D/nuclease 33
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 32
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
PreATP-grasp domain Single hybrid motif 32
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
Rudiment single hybrid motif Single hybrid motif 32
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
Glutathione synthetase ATP-binding domain-like Single hybrid motif 32
"Winged helix" DNA-binding domain GAF domain-like 31
lambda repressor-like DNA-binding domains RmlC-like cupins 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Nucleic acid-binding proteins RuvA domain 2-like 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 31
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
CBS-domain pair FAD-binding/transporter-associated domain-like 32
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 33
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
PYP-like sensor domain (PAS domain) Nucleotide cyclase 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
PYP-like sensor domain (PAS domain) EAL domain-like 33
Homodimeric domain of signal transducing histidine kinase CheY-like 33
Nucleotidyltransferase HD-domain/PDEase-like 33
ClpP/crotonase ClpP/crotonase 21
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Histidine-containing phosphotransfer domain, HPT domain CheY-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
RmlC-like cupins Homeodomain-like 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
ACT-like ACT-like 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 22
HD-domain/PDEase-like TGS-like 22
MFS general substrate transporter MFS general substrate transporter 21
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
HD-domain/PDEase-like ACT-like 22
PDZ domain-like ClpP/crotonase 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 21
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 22
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
Nucleotidyltransferase TGS-like 22
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
Nucleotide-binding domain FAD/NAD(P)-binding domain 21
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 22
PDZ domain-like PDZ domain-like 22
Trypsin-like serine proteases PDZ domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
Cupredoxins Cupredoxins 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Nucleotidyltransferase ACT-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
FMN-linked oxidoreductases Nucleotide-binding domain 21
Thioredoxin-like Thioredoxin-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Phage tail proteins gp5 N-terminal domain-like 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
beta-Roll Metalloproteases ("zincins"), catalytic domain 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Copper amine oxidase, domain N Amine oxidase catalytic domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
4Fe-4S ferredoxins ADC-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Alpha-L RNA-binding motif Pseudouridine synthase 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Galactose-binding domain-like Galactose-binding domain-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nudix "Winged helix" DNA-binding domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
HAD-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
beta-Roll Cadherin-like 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
PPK N-terminal domain-like PHP14-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
HPr-like Phosphohistidine domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Phoshotransferase/anion transport protein Phosphohistidine domain 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
NAD(P)-binding Rossmann-fold domains alpha/beta-Hydrolases 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
tRNA-binding arm Class II aaRS and biotin synthetases 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
Formyltransferase FMT C-terminal domain-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
YrdC/RibB RibA-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Triger factor/SurA peptide-binding domain-like Homeodomain-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
alpha/beta-Hydrolases PilZ domain-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Periplasmic binding protein-like II ACT-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
DNA-glycosylase Nudix 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
HCP-like HCP-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
ISP domain FAD/NAD(P)-binding domain 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
YjeF N-terminal domain-like Ribokinase-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
HMA, heavy metal-associated domain Cation efflux protein transmembrane domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Cyclophilin-like PH0987 N-terminal domain-like 11
alpha-helical ferredoxin Respiratory nitrate reductase 1 gamma chain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
CheY-like Homeodomain-like 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Flavoproteins Riboflavin synthase domain-like 11
Phoshotransferase/anion transport protein Phosphoenolpyruvate/pyruvate domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Molybdenum cofactor biosynthesis protein C, MoaC Molybdenum cofactor biosynthesis proteins 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
beta-lactamase/transpeptidase-like SpoIIaa-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Carbamate kinase-like PUA domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
PreATP-grasp domain Cyclophilin-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
OMPA-like OmpA-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
FMN-binding split barrel "Winged helix" DNA-binding domain 11
Class II aaRS and biotin synthetases Translation proteins 11
MetI-like MetI-like 11
Translation proteins PRC-barrel domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Ribonuclease H-like RuvA domain 2-like 11
Periplasmic binding protein-like II Lysozyme-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like EPT/RTPC-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
CarD-like TRCF domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
PIN domain-like DNA/RNA polymerases 11
HRDC-like HRDC-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Lysozyme-like LysM domain 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Isochorismatase-like hydrolases ACP-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Nudix Thiamin phosphate synthase 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
NAD(P)-binding Rossmann-fold domains EPT/RTPC-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Ribonuclease H-like HRDC-like 11
Amine oxidase N-terminal region Amine oxidase catalytic domain 11
ACP-like alpha/beta-Hydrolases 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Bet v1-like Multidrug efflux transporter AcrB transmembrane domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
GroEL-intermediate domain like GroEL apical domain-like 11
Class I glutamine amidotransferase-like Homeodomain-like 11
PYP-like sensor domain (PAS domain) CheY-like 11
DNA clamp DNA clamp 11
PIN domain-like Ribonuclease H-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
PurS-like FGAM synthase PurL, linker domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Amine oxidase N-terminal region Amine oxidase N-terminal region 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
L30e-like alpha/beta knot 11
Inosine monophosphate dehydrogenase (IMPDH) Inosine monophosphate dehydrogenase (IMPDH) 11
PheT/TilS domain Putative DNA-binding domain 11
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
FAD-linked oxidoreductase ALDH-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
RuvA domain 2-like JAB1/MPN domain 11
Pili subunits GspK insert domain-like 11
ACP-like Trimeric LpxA-like enzymes 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Cyclophilin-like Single hybrid motif 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases GAD domain-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
MFS general substrate transporter Proline/betaine transporter ProP, C-terminal cytoplasmic domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Globin-like Riboflavin synthase domain-like 11
YegP-like YegP-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PRTase-like PRTase-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
RmlC-like cupins RmlC-like cupins 11
TPR-like TPR-like 11
HisI-like all-alpha NTP pyrophosphatases 11
Adhesin YadA, collagen-binding domain Pili subunits 11
Tex N-terminal region-like RuvA domain 2-like 11
Single hybrid motif Single hybrid motif 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Carbamate kinase-like ACT-like 11
NTF2-like Sec-C motif 11
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Phoshotransferase/anion transport protein HPr-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Bacterial muramidases Lysozyme-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
PurS-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 11
Cadherin-like Cadherin-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
TGS-like ACT-like 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Macro domain-like Zn-dependent exopeptidases 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Aldolase post-HMGL domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
Homocysteine S-methyltransferase Methionine synthase domain 11
PurS-like PurM C-terminal domain-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
PHP14-like Phospholipase D/nuclease 11
Phoshotransferase/anion transport protein Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Ribonuclease H-like Ribonuclease H-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
PurS-like PurM N-terminal domain-like 11
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 11
HMA, heavy metal-associated domain HAD-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
LysM domain LysM domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Translation proteins ThrRS/AlaRS common domain 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
PHP domain-like AF1531-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Lysozyme-like PGBD-like 11
Regulatory protein AraC Homeodomain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Nucleic acid-binding proteins BRCT domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
PapD-like Periplasmic chaperone C-domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
CheW-like CheY-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Metalloproteases ("zincins"), catalytic domain Cadherin-like 11
RuvA domain 2-like BRCT domain 11
alpha/beta-Hydrolases NTF2-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
FKBP-like FKBP-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
GAF domain-like Phosphohistidine domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
PreATP-grasp domain PreATP-grasp domain 11
RNase III domain-like dsRNA-binding domain-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Rudiment single hybrid motif Cyclophilin-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Nqo5-like HydB/Nqo4-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleic acid-binding proteins GAD domain-like 11
NTF2-like NTF2-like 11
RuvA domain 2-like RuvA domain 2-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Restriction endonuclease-like "Winged helix" DNA-binding domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Cyclophilin-like Cyclophilin-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Periplasmic binding protein-like II NosL/MerB-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Copper amine oxidase, domain N Amine oxidase N-terminal region 11
Hsp33 domain HSP33 redox switch-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11

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