SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Shewanella baltica OS185

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

814 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 501
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3315
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2814
Nucleotide cyclase EAL domain-like 2515
PYP-like sensor domain (PAS domain) Nucleotide cyclase 1912
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 177
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 156
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 156
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 156
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 156
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 156
Actin-like ATPase domain Actin-like ATPase domain 145
CheY-like C-terminal effector domain of the bipartite response regulators 141
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 132
PYP-like sensor domain (PAS domain) EAL domain-like 127
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1211
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 126
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 117
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 118
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 116
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 103
P-loop containing nucleoside triphosphate hydrolases Translation proteins 107
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 103
Homeodomain-like Ribonuclease H-like 101
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 96
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 94
GAF domain-like Nucleotide cyclase 97
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 91
Thioredoxin-like GST C-terminal domain-like 91
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 92
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 85
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 85
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 88
DPP6 N-terminal domain-like alpha/beta-Hydrolases 82
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 85
ACT-like ACT-like 85
Thiolase-like Thiolase-like 72
Cytochrome c Cytochrome c 74
Alpha-L RNA-binding motif Pseudouridine synthase 71
Homodimeric domain of signal transducing histidine kinase CheY-like 77
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 76
lambda repressor-like DNA-binding domains LexA/Signal peptidase 71
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 65
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 63
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 63
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
RmlC-like cupins Homeodomain-like 63
E set domains (Trans)glycosidases 66
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 63
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 65
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 65
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
Homeodomain-like Homeodomain-like 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 61
GroES-like NAD(P)-binding Rossmann-fold domains 62
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 64
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 52
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 51
GAF domain-like EAL domain-like 54
CheY-like CheY-like 55
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 53
Translation proteins EF-G C-terminal domain-like 53
PurM N-terminal domain-like PurM C-terminal domain-like 52
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 55
CheY-like Homeodomain-like 52
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 52
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 53
PreATP-grasp domain Rudiment single hybrid motif 53
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 51
P-loop containing nucleoside triphosphate hydrolases MOP-like 52
CheY-like Histidine-containing phosphotransfer domain, HPT domain 55
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52
CheY-like P-loop containing nucleoside triphosphate hydrolases 52
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 41
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
(Trans)glycosidases Glycosyl hydrolase domain 44
CheY-like Nucleotide cyclase 44
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 42
CheW-like CheY-like 42
TPR-like TPR-like 43
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
Lysozyme-like beta-lactamase/transpeptidase-like 44
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
PYP-like sensor domain (PAS domain) CheY-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 42
CBS-domain pair MgtE membrane domain-like 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
CheY-like EAL domain-like 33
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 31
Carbamate kinase-like ACT-like 33
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
PYP-like sensor domain (PAS domain) GAF domain-like 32
PDZ domain-like ClpP/crotonase 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
Galactose mutarotase-like E set domains 31
HD-domain/PDEase-like Nucleotidyltransferase 32
FKBP-like Triger factor/SurA peptide-binding domain-like 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 33
MgtE N-terminal domain-like CBS-domain pair 31
TPR-like Nucleotide cyclase 32
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 32
DNA methylase specificity domain DNA methylase specificity domain 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
"Winged helix" DNA-binding domain PLP-dependent transferases 31
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
CheY-like HD-domain/PDEase-like 32
RuvA domain 2-like Nucleic acid-binding proteins 33
MgtE N-terminal domain-like MgtE membrane domain-like 31
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 32
E set domains Glycosyl hydrolase domain 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
ClpP/crotonase ClpP/crotonase 33
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 32
HlyD-like secretion proteins HlyD-like secretion proteins 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
HD-domain/PDEase-like ACT-like 32
PLP-binding barrel Alanine racemase C-terminal domain-like 31
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 32
Single hybrid motif CoA-dependent acyltransferases 33
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
2Fe-2S ferredoxin-like alpha-helical ferredoxin 31
Nucleotidyltransferase ACT-like 32
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
Sensory domain-like PYP-like sensor domain (PAS domain) 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
PA domain Subtilisin-like 22
PDZ domain-like PDZ domain-like 22
Lysozyme-like LysM domain 22
Calcium-dependent phosphotriesterase EAL domain-like 22
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
Carbohydrate-binding domain (Trans)glycosidases 22
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
Protease propeptides/inhibitors Subtilisin-like 22
Single hybrid motif Single hybrid motif 22
Ribonuclease H-like DNA/RNA polymerases 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
PA domain Zn-dependent exopeptidases 21
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 22
alpha/beta-Hydrolases TPR-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Thioredoxin-like Thioredoxin-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Carbohydrate binding domain Chitinase insertion domain 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Quinoprotein alcohol dehydrogenase-like PYP-like sensor domain (PAS domain) 22
Carbohydrate binding domain Carbohydrate binding domain 22
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Quinoprotein alcohol dehydrogenase-like EAL domain-like 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 21
PreATP-grasp domain Single hybrid motif 22
HAD-like Calcium ATPase, transmembrane domain M 22
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 22
Homodimeric domain of signal transducing histidine kinase CheW-like 21
Regulatory protein AraC Homeodomain-like 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Trypsin-like serine proteases PDZ domain-like 22
HMA, heavy metal-associated domain HAD-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
TGS-like ACT-like 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Carbamate kinase-like PUA domain-like 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
Carbohydrate binding domain (Trans)glycosidases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Carbohydrate-binding domain E set domains 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Sensory domain-like Sensory domain-like 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
Nucleotidyltransferase TGS-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
GAF domain-like HD-domain/PDEase-like 22
Phospholipase D/nuclease Phospholipase D/nuclease 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
Periplasmic binding protein-like II Nucleotide cyclase 22
Zinc beta-ribbon Zinc beta-ribbon 22
TSP type-3 repeat OmpA-like 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
HD-domain/PDEase-like TGS-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
LysM domain LysM domain 22
Leukotriene A4 hydrolase N-terminal domain ARM repeat 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
Quinoprotein alcohol dehydrogenase-like Nucleotide cyclase 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Macro domain-like Zn-dependent exopeptidases 21
beta-N-acetylhexosaminidase-like domain E set domains 22
Metalloproteases ("zincins"), catalytic domain PKD domain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Calcium-dependent phosphotriesterase Nucleotide cyclase 22
Calcium-dependent phosphotriesterase PYP-like sensor domain (PAS domain) 22
(Trans)glycosidases Chitinase insertion domain 22
alpha-helical ferredoxin Nucleotide-binding domain 22
Metalloproteases ("zincins"), catalytic domain ARM repeat 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Calcium ATPase, transduction domain A HAD-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
CheY-like Methylesterase CheB, C-terminal domain 21
Rudiment single hybrid motif Single hybrid motif 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
HCP-like HCP-like 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
S-adenosyl-L-methionine-dependent methyltransferases Clavaminate synthase-like 11
Mss4-like Peptide methionine sulfoxide reductase 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
alpha-helical ferredoxin ADC-like 11
E set domains Carbohydrate binding domain 11
Concanavalin A-like lectins/glucanases Fibronectin type III 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
beta-Roll beta-Roll 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
PUA domain-like alpha/beta knot 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
MFS general substrate transporter 4Fe-4S ferredoxins 11
H-NS histone-like proteins H-NS histone-like proteins 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
MetI-like MetI-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
GAF domain-like CBS-domain pair 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
PLP-dependent transferases PLP-dependent transferases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Cupredoxins Cytochrome c 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PriA/YqbF domain Rho N-terminal domain-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
PHP14-like Phospholipase D/nuclease 11
NTF2-like Nucleotide cyclase 11
Tricorn protease N-terminal domain ClpP/crotonase 11
HAMP domain-like CheY-like 11
ClpP/crotonase Single hybrid motif 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
alpha-helical ferredoxin Formate dehydrogenase/DMSO reductase, domains 1-3 11
Sensory domain-like Nucleotide cyclase 11
RNase III domain-like dsRNA-binding domain-like 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
Tricorn protease N-terminal domain DPP6 N-terminal domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Fibronectin type III OMPA-like 11
Flavoproteins Riboflavin synthase domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
DNA-glycosylase Nudix 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
UROD/MetE-like UROD/MetE-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Porins Porins 11
Aldolase post-HMGL domain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
DPP6 N-terminal domain-like Composite domain of metallo-dependent hydrolases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Concanavalin A-like lectins/glucanases Cadherin-like 11
Barwin-like endoglucanases Sporulation related repeat 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Aldolase Single hybrid motif 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
DNA clamp DNA clamp 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PIN domain-like DNA/RNA polymerases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
HAMP domain-like Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
E set domains Chitinase insertion domain 11
Translation proteins "Winged helix" DNA-binding domain 11
TGS-like Class II aaRS ABD-related 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
RuvA domain 2-like RuvA domain 2-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Periplasmic binding protein-like II Aldolase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
FliG FliG 11
Sec-C motif Sec-C motif 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
ACP-like ACP-like 11
Glycoside hydrolase/deacetylase Carbohydrate binding domain 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
CalX-like OMPA-like 11
WD40 repeat-like EAL domain-like 11
CheY-like CheC-like 11
L30e-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
PreATP-grasp domain PreATP-grasp domain 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
EAL domain-like CBS-domain pair 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
CBS-domain pair Nucleotide cyclase 11
Metallo-hydrolase/oxidoreductase SCP-like 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
Multiheme cytochromes Multiheme cytochromes 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Protease propeptides/inhibitors Collagen-binding domain 11
Multidrug efflux transporter AcrB transmembrane domain Cysteine proteinases 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
"Winged helix" DNA-binding domain MOP-like 11
Periplasmic binding protein-like II Lysozyme-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Carboxypeptidase regulatory domain-like Porins 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
Putative DNA-binding domain Ribonuclease H-like 11
TerB-like Chaperone J-domain 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
Globin-like Riboflavin synthase domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
TATA-box binding protein-like DNA-glycosylase 11
Periplasmic binding protein-like II GlnB-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Subtilisin-like Cadherin-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
(Trans)glycosidases PKD domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
WD40 repeat-like PYP-like sensor domain (PAS domain) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
GroES-like GroES-like 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
(Phosphotyrosine protein) phosphatases II NAD kinase/diacylglycerol kinase-like 11
Class II aaRS and biotin synthetases Translation proteins 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Nucleic acid-binding proteins PheT/TilS domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
PKD domain PKD domain 11
HIT-like HIT-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Carbohydrate binding domain Immunoglobulin 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
ACT-like Formyltransferase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Bacterial muramidases Lysozyme-like 11
GAF domain-like GAF domain-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
PurS-like FGAM synthase PurL, linker domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
Immunoglobulin (Trans)glycosidases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Pseudouridine synthase PUA domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
ACT-like Homeodomain-like 11
Multiheme cytochromes Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Cadherin-like Cadherin-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Cadherin-like OMPA-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Ribonuclease H-like HRDC-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
GIY-YIG endonuclease RuvA domain 2-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
PIN domain-like Ribonuclease H-like 11
Cadherin-like CalX-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
DPP6 N-terminal domain-like Metallo-dependent hydrolases 11
GAF domain-like Homeodomain-like 11
Putative isomerase YbhE MetI-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
PPK N-terminal domain-like PHP14-like 11
L domain-like Protein kinase-like (PK-like) 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Translation proteins ThrRS/AlaRS common domain 11
Homeodomain-like TATA-box binding protein-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
CheY-like PLP-dependent transferases 11
DPP6 N-terminal domain-like ClpP/crotonase 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
E set domains PKD domain 11
Fibronectin type III Fibronectin type III 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Zn-dependent exopeptidases LysM domain 11
RuvA domain 2-like JAB1/MPN domain 11
Ribonuclease H-like RuvA domain 2-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
YrdC/RibB RibA-like 11
Multiheme cytochromes FAD/NAD(P)-binding domain 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Fibronectin type III Cadherin-like 11
ClpP/crotonase Rudiment single hybrid motif 11
4Fe-4S ferredoxins ADC-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Subtilisin-like Collagen-binding domain 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
HD-domain/PDEase-like CBS-domain pair 11
Acetoacetate decarboxylase-like FAD/NAD(P)-binding domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PurS-like Class I glutamine amidotransferase-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
RuvA domain 2-like BRCT domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Nucleic acid-binding proteins GAD domain-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
ClpP/crotonase PreATP-grasp domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Translation proteins Translation proteins 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Concanavalin A-like lectins/glucanases CalX-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
PRC-barrel domain PRC-barrel domain 11
beta-Roll vWA-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
ClpP/crotonase Glutathione synthetase ATP-binding domain-like 11
RmlC-like cupins RmlC-like cupins 11
Tricorn protease N-terminal domain PDZ domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
CheC-like Surface presentation of antigens (SPOA) 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
GAF domain-like Phosphohistidine domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
CarD-like TRCF domain-like 11
Concanavalin A-like lectins/glucanases OMPA-like 11
DPP6 N-terminal domain-like PDZ domain-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Concanavalin A-like lectins/glucanases FAD-binding/transporter-associated domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PA domain Cadherin-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
FKBP-like FKBP-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
cAMP-binding domain-like CBS-domain pair 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
PKD domain Carbohydrate binding domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Origin of replication-binding domain, RBD-like P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins PRC-barrel domain 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
CheY-like Ornithine decarboxylase C-terminal domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Cytidine deaminase-like Cytidine deaminase-like 11
Lamin A/C globular tail domain DNase I-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Chitinase insertion domain PKD domain 11
HisI-like all-alpha NTP pyrophosphatases 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
GroEL equatorial domain-like GroEL equatorial domain-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
Nucleotide-binding domain Formate dehydrogenase/DMSO reductase, domains 1-3 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
Periplasmic binding protein-like II ACT-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Cysteine proteinases 11
E set domains E set domains 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
WD40 repeat-like Nucleotide cyclase 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
FabD/lysophospholipase-like Porins 11
Protease propeptides/inhibitors Galactose-binding domain-like 11
Hsp33 domain HSP33 redox switch-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Thiolase-like ACP-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Pili subunits GspK insert domain-like 11
Ribokinase-like Thiamin phosphate synthase 11
CheY-like alpha/beta-Hydrolases 11
Immunoglobulin Chitinase insertion domain 11
DeoB insert domain-like Alkaline phosphatase-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Subtilisin-like Galactose-binding domain-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
OMPA-like TSP type-3 repeat 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Hemerythrin-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Methionine synthase domain Methionine synthase activation domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Homeodomain-like DNA-glycosylase 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
HAD-like Ribosomal protein S5 domain 2-like 11
Aldolase AFP III-like domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
Phase 1 flagellin Phase 1 flagellin 11
OMPA-like OmpA-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
vWA-like TPR-like 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
ALDH-like Dehydroquinate synthase-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Quinoprotein alcohol dehydrogenase-like WD40 repeat-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Ribokinase-like Nucleotidylyl transferase 11
FMN-binding split barrel UbiD C-terminal domain-like 11
YajQ-like YajQ-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Sensory domain-like Sporulation response regulatory protein Spo0B 11
DNase I-like PKD domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Zinc beta-ribbon DNA primase core 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Nucleotide-binding domain ADC-like 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Cysteine proteinases 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
PHP domain-like AF1531-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Chorismate mutase II Aldolase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Restriction endonuclease-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
TGS-like Class II aaRS and biotin synthetases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Globin-like Nucleotide cyclase 11
alpha/beta-Hydrolases P-loop containing nucleoside triphosphate hydrolases 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Sec-C motif NTF2-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Homeodomain-like SIS domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
PurS-like PurM C-terminal domain-like 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Nucleotidylyl transferase tRNA-binding arm 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
HAMP domain-like EAL domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
vWA-like Quinoprotein alcohol dehydrogenase-like 11
C-terminal effector domain of the bipartite response regulators TPR-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
HRDC-like HRDC-like 11
Quinoprotein alcohol dehydrogenase-like Calcium-dependent phosphotriesterase 11
Nucleic acid-binding proteins BRCT domain 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Chorismate mutase II ACT-like 11
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Thiolase-like FabD/lysophospholipase-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
4Fe-4S ferredoxins Radical SAM enzymes 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Zinc beta-ribbon 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Formyltransferase FMT C-terminal domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
FAD-linked oxidoreductase ALDH-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
PurS-like PurM N-terminal domain-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Resolvase-like Homeodomain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
GspK insert domain-like GspK insert domain-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
MOP-like MOP-like 11
Putative DNA-binding domain Translation proteins 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Class I glutamine amidotransferase-like Homeodomain-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
FabD/lysophospholipase-like ACP-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Galactose-binding domain-like (Trans)glycosidases 11
Trigger factor ribosome-binding domain FKBP-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
ACT-like Aldolase 11
post-HMGL domain-like Single hybrid motif 11
TGS-like ThrRS/AlaRS common domain 11
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 11
Lysozyme-like PGBD-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Fibronectin type III CalX-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11

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