SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Sinorhizobium fredii NGR234

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

726 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 662
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 5913
P-loop containing nucleoside triphosphate hydrolases MOP-like 452
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 405
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 384
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3419
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 332
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 332
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 315
Homeodomain-like Homeodomain-like 297
GroES-like NAD(P)-binding Rossmann-fold domains 284
CheY-like C-terminal effector domain of the bipartite response regulators 253
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 235
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 222
Thioredoxin-like GST C-terminal domain-like 211
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 192
Nucleotide cyclase EAL domain-like 188
Actin-like ATPase domain Actin-like ATPase domain 188
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 173
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 165
Homeodomain-like Ribonuclease H-like 162
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 153
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 157
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 143
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1413
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 147
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1413
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 135
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 135
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 136
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 135
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 135
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 135
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 132
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 135
Nucleotide cyclase TPR-like 116
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 111
Thiolase-like Thiolase-like 111
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1110
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 114
beta-Roll beta-Roll 109
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 103
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 103
Class I glutamine amidotransferase-like Homeodomain-like 103
PYP-like sensor domain (PAS domain) Nucleotide cyclase 106
PYP-like sensor domain (PAS domain) EAL domain-like 95
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 98
Homodimeric domain of signal transducing histidine kinase CheY-like 98
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 98
Folate-binding domain Aminomethyltransferase beta-barrel domain 83
CheY-like P-loop containing nucleoside triphosphate hydrolases 84
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 81
Cupredoxins Cupredoxins 83
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 84
"Winged helix" DNA-binding domain GAF domain-like 81
P-loop containing nucleoside triphosphate hydrolases Translation proteins 87
PreATP-grasp domain Rudiment single hybrid motif 84
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 84
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 82
MetI-like MetI-like 82
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 82
Calcium ATPase, transduction domain A HAD-like 76
FAD/NAD(P)-binding domain Folate-binding domain 72
Calcium ATPase, transmembrane domain M HAD-like 76
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 73
Regulatory protein AraC Homeodomain-like 72
cAMP-binding domain-like "Winged helix" DNA-binding domain 72
TPR-like TPR-like 76
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 72
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 74
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 64
PYP-like sensor domain (PAS domain) CheY-like 65
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 65
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 61
PLP-binding barrel Alanine racemase C-terminal domain-like 62
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 62
Enolase N-terminal domain-like Enolase C-terminal domain-like 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 64
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 65
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 62
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 62
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 53
Lysozyme-like beta-lactamase/transpeptidase-like 53
"Winged helix" DNA-binding domain Chorismate lyase-like 52
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 51
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 53
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 53
CheY-like Homeodomain-like 51
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 51
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
HMA, heavy metal-associated domain HAD-like 54
lambda repressor-like DNA-binding domains RmlC-like cupins 53
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 53
PGBD-like L,D-transpeptidase catalytic domain-like 53
Single hybrid motif CoA-dependent acyltransferases 51
GroES-like GroES-like 51
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
Trypsin-like serine proteases PDZ domain-like 52
(Trans)glycosidases Glycosyl hydrolase domain 53
PDZ domain-like PDZ domain-like 52
CheY-like CheY-like 54
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 51
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 55
Phospholipase D/nuclease Phospholipase D/nuclease 55
FAD-linked reductases, C-terminal domain Folate-binding domain 51
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 53
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 51
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 51
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
Alpha-L RNA-binding motif Pseudouridine synthase 42
"Winged helix" DNA-binding domain PLP-dependent transferases 41
GroEL-intermediate domain like GroEL apical domain-like 41
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
"Winged helix" DNA-binding domain Actin-like ATPase domain 42
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 44
C-terminal effector domain of the bipartite response regulators TPR-like 43
Metalloproteases ("zincins"), catalytic domain beta-Roll 44
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 43
Glutathione synthetase ATP-binding domain-like Single hybrid motif 43
GroEL equatorial domain-like GroEL-intermediate domain like 41
Rudiment single hybrid motif Single hybrid motif 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 41
PreATP-grasp domain Single hybrid motif 43
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 44
E set domains (Trans)glycosidases 43
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 41
CBS-domain pair FAD-binding/transporter-associated domain-like 41
ACT-like Formyltransferase 41
ACT-like ACT-like 43
HAMP domain-like PYP-like sensor domain (PAS domain) 43
GroEL equatorial domain-like GroEL apical domain-like 41
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 31
Translation proteins EF-G C-terminal domain-like 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 32
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 32
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 32
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 31
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 33
CheY-like Nucleotide cyclase 32
L30e-like alpha/beta knot 31
TolB, N-terminal domain TPR-like 33
Lysozyme-like PGBD-like 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
HlyD-like secretion proteins HlyD-like secretion proteins 32
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 32
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 32
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 32
ParB/Sulfiredoxin KorB DNA-binding domain-like 31
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 32
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 32
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
Nqo1 middle domain-like Nqo1C-terminal domain-like 32
RmlC-like cupins Homeodomain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Cytochrome c Cytochrome c 31
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 31
E set domains Glycosyl hydrolase domain 32
MalF N-terminal region-like MetI-like 31
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 31
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 33
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 33
FKBP-like Triger factor/SurA peptide-binding domain-like 33
HAMP domain-like Nucleotide cyclase 32
Homeodomain-like SIS domain 31
Calcium ATPase, transmembrane domain M Metal cation-transporting ATPase, ATP-binding domain N 33
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 33
ISP domain Bet v1-like 31
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
FAD-linked oxidoreductase ALDH-like 21
Galactose mutarotase-like Galactose mutarotase-like 22
Protein kinase-like (PK-like) PLP-dependent transferases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-terminal domain of bifunctional PutA protein ALDH-like 21
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 21
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 22
Formyltransferase FMT C-terminal domain-like 21
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
Histidine-containing phosphotransfer domain, HPT domain CheY-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 21
HAMP domain-like EAL domain-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
DAK1/DegV-like DhaL-like 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Homeodomain-like Probable bacterial effector-binding domain 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 21
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 22
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 21
GAF domain-like PYP-like sensor domain (PAS domain) 22
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 21
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 22
Single hybrid motif alpha/beta-Hydrolases 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
Nucleotidyltransferase ACT-like 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
ClpP/crotonase ClpP/crotonase 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Fic-like "Winged helix" DNA-binding domain 22
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Siroheme synthase middle domains-like Tetrapyrrole methylase 21
Macro domain-like Zn-dependent exopeptidases 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 21
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 21
PH0987 N-terminal domain-like Cyclophilin-like 22
Galactose mutarotase-like Six-hairpin glycosidases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
Adenine nucleotide alpha hydrolases-like GAF domain-like 22
Nucleotide cyclase TolB, N-terminal domain 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
CheY-like Methylesterase CheB, C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
4Fe-4S ferredoxins ADC-like 21
alpha-helical ferredoxin Nucleotide-binding domain 22
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 22
FAD/NAD(P)-binding domain ISP domain 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
alpha/beta-Hydrolases alpha/beta-Hydrolases 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
FMN-binding split barrel UbiD C-terminal domain-like 22
Heme-dependent peroxidases Heme-dependent peroxidases 21
Translation proteins ThrRS/AlaRS common domain 22
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
Aldolase post-HMGL domain-like 22
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 22
Aconitase iron-sulfur domain LeuD/IlvD-like 21
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
2Fe-2S ferredoxin-like ADC-like 21
PDZ domain-like ClpP/crotonase 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
P-loop containing nucleoside triphosphate hydrolases GAF domain-like 22
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
Galactose-binding domain-like (Trans)glycosidases 22
P-loop containing nucleoside triphosphate hydrolases TPR-like 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
MFS general substrate transporter MFS general substrate transporter 21
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
CarD-like TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Nucleotide cyclase Rhodanese/Cell cycle control phosphatase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
TerB-like Chaperone J-domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Cyclophilin-like Cyclophilin-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
WD40 repeat-like WD40 repeat-like 11
RuvA domain 2-like JAB1/MPN domain 11
DNA-glycosylase Nudix 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
TGS-like ACT-like 11
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 11
Hsp33 domain HSP33 redox switch-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
PGBD-like PGBD-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
post-HMGL domain-like Single hybrid motif 11
Resolvase-like Homeodomain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Trypsin-like serine proteases Phospholipase D/nuclease 11
Nudix "Winged helix" DNA-binding domain 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Ribonuclease H-like RuvA domain 2-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Putative DNA-binding domain lambda repressor-like DNA-binding domains 11
LysM domain LysM domain 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
RuvA domain 2-like BRCT domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Nucleotidylyl transferase tRNA-binding arm 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Poly A polymerase C-terminal region-like ACT-like 11
Oxidoreductase molybdopterin-binding domain E set domains 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Translation proteins PRC-barrel domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Nucleotide-diphospho-sugar transferases Six-hairpin glycosidases 11
PheT/TilS domain Putative DNA-binding domain 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
PHP domain-like AF1531-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
YrdC/RibB RibA-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Translation proteins Translation proteins 11
Nucleic acid-binding proteins GAD domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Apolipoprotein A-I Apolipoprotein A-I 11
PIN domain-like Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Acetyl-CoA synthetase-like ACP-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Restriction endonuclease-like Restriction endonuclease-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
CBS-domain pair Nucleotide cyclase 11
PreATP-grasp domain post-HMGL domain-like 11
Thiolase-like GroES-like 11
Rudiment single hybrid motif Aldolase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Single hybrid motif TK C-terminal domain-like 11
alpha/beta-Hydrolases OsmC-like 11
FliG FliG 11
Thiolase-like FabD/lysophospholipase-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
EAL domain-like CBS-domain pair 11
HAMP domain-like PP2C-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
CheY-like Purine and uridine phosphorylases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain NAD(P)-linked oxidoreductase 11
Carbamate kinase-like PUA domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
GroES-like ACP-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase alpha/beta-Hydrolases 11
HD-domain/PDEase-like TGS-like 11
CheW-like CheY-like 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain Six-hairpin glycosidases 11
TGS-like Class II aaRS ABD-related 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
E set domains E set domains 11
Aldolase Single hybrid motif 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
PreATP-grasp domain PreATP-grasp domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Bacterial muramidases Lysozyme-like 11
Hairpin loop containing domain-like Terpenoid cyclases/Protein prenyltransferases 11
beta-lactamase/transpeptidase-like Sporulation related repeat 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
PLP-dependent transferases PLP-dependent transferases 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Tex N-terminal region-like Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases WD40 repeat-like 11
Ribosomal protein L6 Ribosomal protein L6 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
MFS general substrate transporter Sm-like ribonucleoproteins 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
LysM domain Duplicated hybrid motif 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Nucleic acid-binding proteins BRCT domain 11
Glycoside hydrolase/deacetylase UraD-Like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
AGR C 984p-like AGR C 984p-like 11
Nucleotidyltransferase TGS-like 11
Sensory domain-like Nucleotide cyclase 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
PHP14-like Phospholipase D/nuclease 11
HD-domain/PDEase-like Nucleotidyltransferase 11
beta-Roll Concanavalin A-like lectins/glucanases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Thioesterase/thiol ester dehydrase-isomerase 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
CheY-like Aminoacid dehydrogenase-like, N-terminal domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Rudiment single hybrid motif post-HMGL domain-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
HAD-like P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
AhpD-like AhpD-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Thiolase-like ACP-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Sensory domain-like HAMP domain-like 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
FMN-binding split barrel Nudix 11
RuvA domain 2-like RuvA domain 2-like 11
Carbamate kinase-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
GAF domain-like Phosphohistidine domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Trigger factor ribosome-binding domain FKBP-like 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
GAF domain-like Homeodomain-like 11
PUA domain-like alpha/beta knot 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked reductases, C-terminal domain MoaD/ThiS 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Homodimeric domain of signal transducing histidine kinase Nucleotide cyclase 11
Aldolase AFP III-like domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Hairpin loop containing domain-like TPR-like 11
PIN domain-like DNA/RNA polymerases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Sec-C motif 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
PreATP-grasp domain Aldolase 11
Duplicated hybrid motif PLP-dependent transferases 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
DNA clamp DNA clamp 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
TPR-like Rhodanese/Cell cycle control phosphatase 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
NTF2-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Putative DNA-binding domain RmlC-like cupins 11
Nucleotidyltransferase Nucleotidyltransferase 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
NAD(P)-binding Rossmann-fold domains NAD(P)-linked oxidoreductase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
TGS-like ThrRS/AlaRS common domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
HRDC-like HRDC-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
ClpP/crotonase NfeD domain-like 11
HAMP domain-like CheY-like 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
ADC synthase Class I glutamine amidotransferase-like 11
FabD/lysophospholipase-like ACP-like 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain LysM domain 11
Ribonuclease H-like HRDC-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Thioredoxin-like TPR-like 11
Periplasmic binding protein-like II ACT-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
dUTPase-like dUTPase-like 11
HD-domain/PDEase-like ACT-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Putative DNA-binding domain C-terminal effector domain of the bipartite response regulators 11
YjeF N-terminal domain-like Ribokinase-like 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
CheY-like NAD(P)-binding Rossmann-fold domains 11
Ribonuclease H-like DNA/RNA polymerases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
Nucleotide-diphospho-sugar transferases PLP-dependent transferases 11
TGS-like Class II aaRS and biotin synthetases 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Phosphoenolpyruvate/pyruvate domain Homeodomain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Metallo-dependent phosphatases LysM domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide cyclase WD40 repeat-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
CBS-domain pair MgtE membrane domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
S-adenosyl-L-methionine-dependent methyltransferases EreA/ChaN-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
MgtE N-terminal domain-like CBS-domain pair 11
HCP-like PGBD-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Tex N-terminal region-like RuvA domain 2-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
TPR-like Terpenoid cyclases/Protein prenyltransferases 11
RNase III domain-like dsRNA-binding domain-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Phosphoenolpyruvate/pyruvate domain P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Thioredoxin-like Nqo1 middle domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
alpha-helical ferredoxin ARM repeat 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Serine metabolism enzymes domain ACT-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PLP-dependent transferases NAD(P)-binding Rossmann-fold domains 11
FabD/lysophospholipase-like GroES-like 11
Nucleotide-binding domain MoaD/ThiS 11
Dihydropteroate synthetase-like Methionine synthase domain 11
ALDH-like ALDH-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins PheT/TilS domain 11
Zinc beta-ribbon DNA primase core 11
Protein kinase-like (PK-like) Duplicated hybrid motif 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Trypsin-like serine proteases His-Me finger endonucleases 11
C-terminal effector domain of the bipartite response regulators TolB, N-terminal domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
TPR-like Porins 11
YebC-like PFL-like glycyl radical enzymes 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
"Winged helix" DNA-binding domain Rhodanese/Cell cycle control phosphatase 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
DNA methylase specificity domain DNA methylase specificity domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
PPK N-terminal domain-like PHP14-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11

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