SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Acetobacter pasteurianus IFO 3283-01

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

551 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 241
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2414
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1610
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 122
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 125
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 112
Actin-like ATPase domain Actin-like ATPase domain 115
Resolvase-like Homeodomain-like 101
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 106
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 97
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 86
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 83
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 86
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 86
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 84
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 81
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 84
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 86
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 75
GroES-like NAD(P)-binding Rossmann-fold domains 72
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 64
CheY-like C-terminal effector domain of the bipartite response regulators 62
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 61
Cytochrome c Cytochrome c 64
P-loop containing nucleoside triphosphate hydrolases Translation proteins 66
Thioredoxin-like GST C-terminal domain-like 51
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 51
PreATP-grasp domain Rudiment single hybrid motif 52
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 52
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 52
CheY-like Homodimeric domain of signal transducing histidine kinase 54
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
ISP domain Bet v1-like 51
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 44
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 44
Triger factor/SurA peptide-binding domain-like FKBP-like 42
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 41
Homeodomain-like Ribonuclease H-like 42
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 42
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 32
Alpha-L RNA-binding motif Pseudouridine synthase 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 33
PLP-binding barrel Alanine racemase C-terminal domain-like 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 33
HlyD-like secretion proteins HlyD-like secretion proteins 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Trypsin-like serine proteases PDZ domain-like 32
Calcium ATPase, transduction domain A HAD-like 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 33
E set domains (Trans)glycosidases 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 32
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Translation proteins EF-G C-terminal domain-like 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 33
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 32
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 33
HAD-like Calcium ATPase, transmembrane domain M 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
ACT-like ACT-like 33
alpha-helical ferredoxin Nucleotide-binding domain 32
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 33
tRNA-binding arm Class II aaRS and biotin synthetases 21
CheY-like P-loop containing nucleoside triphosphate hydrolases 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Single hybrid motif CoA-dependent acyltransferases 21
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 21
(Trans)glycosidases Glycosyl hydrolase domain 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
"Winged helix" DNA-binding domain PLP-dependent transferases 21
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
P-loop containing nucleoside triphosphate hydrolases GAF domain-like 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Cyclophilin-like PH0987 N-terminal domain-like 22
Homeodomain-like mu transposase, C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 21
DNA methylase specificity domain DNA methylase specificity domain 21
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
CheY-like Homeodomain-like 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Ribonuclease H-like mu transposase, C-terminal domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
PDZ domain-like ClpP/crotonase 21
HD-domain/PDEase-like Nucleotidyltransferase 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
CheY-like PYP-like sensor domain (PAS domain) 22
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
PDZ domain-like PDZ domain-like 21
OMPA-like OmpA-like 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Bacterial muramidases Lysozyme-like 21
E set domains Glycosyl hydrolase domain 22
CheY-like CheY-like 22
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 21
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 21
Adenine nucleotide alpha hydrolases-like GAF domain-like 21
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Nucleic acid-binding proteins RuvA domain 2-like 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Homeodomain-like Homeodomain-like 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
TPR-like TPR-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
Quinoprotein alcohol dehydrogenase-like Cytochrome c 22
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Phospholipase D/nuclease Phospholipase D/nuclease 22
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 21
"Winged helix" DNA-binding domain GAF domain-like 21
L30e-like alpha/beta knot 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
RuvA domain 2-like BRCT domain 11
TGS-like ThrRS/AlaRS common domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
Inosine monophosphate dehydrogenase (IMPDH) Nitrite and sulphite reductase 4Fe-4S domain-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
Class II aaRS and biotin synthetases GAD domain-like 11
Rudiment single hybrid motif Cyclophilin-like 11
Aldolase SIS domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Cyclophilin-like Single hybrid motif 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
E set domains E set domains 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
HMA, heavy metal-associated domain HAD-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
YrdC/RibB RibA-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
PH0987 N-terminal domain-like Single hybrid motif 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
GroES-like GroES-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
GAF domain-like Nucleotide cyclase 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Single hybrid motif TK C-terminal domain-like 11
Periplasmic binding protein-like II MetI-like 11
HRDC-like HRDC-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Translation proteins ThrRS/AlaRS common domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
P-loop containing nucleoside triphosphate hydrolases Dehydroquinate synthase-like 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Carbamate kinase-like PUA domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Macro domain-like Zn-dependent exopeptidases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Nudix "Winged helix" DNA-binding domain 11
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Ribonuclease H-like HRDC-like 11
TerB-like Chaperone J-domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Acid proteases Acid proteases 11
P-loop containing nucleoside triphosphate hydrolases Microbial and mitochondrial ADK, insert "zinc finger" domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
TrpR-like Ribonuclease H-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
beta-Roll beta-Roll 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Molybdenum cofactor-binding domain Cytochrome c 11
ADC-like Flavoproteins 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
GAF domain-like Homeodomain-like 11
YlxR-like L30e-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Nucleotidyltransferase TGS-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
HCP-like HCP-like 11
Class II aaRS and biotin synthetases Translation proteins 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
PIN domain-like Ribonuclease H-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Trigger factor ribosome-binding domain FKBP-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
PheT/TilS domain Putative DNA-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
YjeF N-terminal domain-like Ribokinase-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Nucleotidylyl transferase Riboflavin kinase-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
TPR-like Nucleotide-diphospho-sugar transferases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Periplasmic binding protein-like II ACT-like 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Single hybrid motif alpha/beta-Hydrolases 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Formyltransferase FMT C-terminal domain-like 11
SIS domain CBS-domain pair 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Globin-like Riboflavin synthase domain-like 11
TGS-like Class II aaRS ABD-related 11
PK beta-barrel domain-like PK C-terminal domain-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Protein kinase-like (PK-like) Nucleic acid-binding proteins 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Clc chloride channel CBS-domain pair 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
ADC-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
ACT-like Formyltransferase 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
PLP-dependent transferases PLP-dependent transferases 11
Flavoproteins Riboflavin synthase domain-like 11
Translation proteins PRC-barrel domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Cyclophilin-like Cyclophilin-like 11
PHP14-like Phospholipase D/nuclease 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Acyl-CoA N-acyltransferases (Nat) Nudix 11
Acyl-CoA N-acyltransferases (Nat) Ribulose-phoshate binding barrel 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Ribbon-helix-helix ACT-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nqo5-like HydB/Nqo4-like 11
TGS-like Class II aaRS and biotin synthetases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
Synuclein Synuclein 11
Cupredoxins Cupredoxins 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Carbamate kinase-like ACT-like 11
Sensory domain-like GAF domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
FAD/NAD(P)-binding domain ISP domain 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Translation proteins Translation proteins 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Zinc beta-ribbon DNA primase core 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
CO dehydrogenase molybdoprotein N-domain-like Cytochrome c 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
PIN domain-like DNA/RNA polymerases 11
PreATP-grasp domain Single hybrid motif 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
RNase III domain-like dsRNA-binding domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Ribokinase-like Nucleotidylyl transferase 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
MetI-like MetI-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Nucleic acid-binding proteins BRCT domain 11
Nucleotidyltransferase ACT-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Nitrite/Sulfite reductase N-terminal domain-like ISP domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
HD-domain/PDEase-like ACT-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
PUA domain-like alpha/beta knot 11
Hsp33 domain HSP33 redox switch-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
CarD-like TRCF domain-like 11
Tropomyosin Smc hinge domain 11
Galactose mutarotase-like E set domains 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Rudiment single hybrid motif Single hybrid motif 11
Nucleotide-diphospho-sugar transferases Protein kinase-like (PK-like) 11
HD-domain/PDEase-like TGS-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
PPK N-terminal domain-like PHP14-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Voltage-gated potassium channels E set domains 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
"Winged helix" DNA-binding domain HRDC-like 11
Pectin lyase-like Hedgehog/intein (Hint) domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
DNA-glycosylase Nudix 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
RmlC-like cupins Homeodomain-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Galactose mutarotase-like Galactose mutarotase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like ISP domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Flavoproteins 11
DNA clamp DNA clamp 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Thioredoxin-like TPR-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Nucleic acid-binding proteins PheT/TilS domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
PreATP-grasp domain Cyclophilin-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
FAD-linked oxidoreductase ALDH-like 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Tricorn protease domain 2 alpha/beta-Hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
ADC-like Riboflavin synthase domain-like 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Riboflavin synthase domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Sensory domain-like Nucleotide cyclase 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases Phospholipase D/nuclease 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Thiolase-like Thiolase-like 11

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