SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Candidatus Hodgkinia cicadicola Dsem

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

57 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases Translation proteins 22
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 22
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
EF-G C-terminal domain-like EF-G C-terminal domain-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase 11
GroEL equatorial domain-like GroEL apical domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Translation proteins EF-G C-terminal domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Dihydropteroate synthetase-like Methionine synthase domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Nucleic acid-binding proteins Translation proteins SH3-like domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Actin-like ATPase domain Actin-like ATPase domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Methionine synthase domain Methionine synthase activation domain-like 11

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