SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Rhizobium leguminosarum bv. viciae 3841

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

764 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1153
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 7414
P-loop containing nucleoside triphosphate hydrolases MOP-like 632
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4824
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 453
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 435
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 431
Homeodomain-like Homeodomain-like 437
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 371
GroES-like NAD(P)-binding Rossmann-fold domains 302
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 292
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 276
Thioredoxin-like GST C-terminal domain-like 262
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 255
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 245
CheY-like C-terminal effector domain of the bipartite response regulators 233
Nucleotide cyclase EAL domain-like 2210
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 223
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2114
Actin-like ATPase domain Actin-like ATPase domain 217
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 201
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1913
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 175
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 163
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 156
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1513
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 153
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1510
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 143
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 147
Enolase N-terminal domain-like Enolase C-terminal domain-like 142
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 135
Homodimeric domain of signal transducing histidine kinase CheY-like 1311
"Winged helix" DNA-binding domain Actin-like ATPase domain 123
Class I glutamine amidotransferase-like Homeodomain-like 122
Thiolase-like Thiolase-like 111
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 114
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 114
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 114
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 114
PYP-like sensor domain (PAS domain) CheY-like 119
(Trans)glycosidases Glycosyl hydrolase domain 118
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 114
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 107
HAD-like Calcium ATPase, transmembrane domain M 107
C-terminal effector domain of the bipartite response regulators TPR-like 107
Calcium ATPase, transduction domain A HAD-like 107
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 101
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 101
PYP-like sensor domain (PAS domain) Nucleotide cyclase 107
PreATP-grasp domain Rudiment single hybrid motif 94
cAMP-binding domain-like "Winged helix" DNA-binding domain 91
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 95
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 96
PYP-like sensor domain (PAS domain) EAL domain-like 96
"Winged helix" DNA-binding domain GAF domain-like 91
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 94
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 83
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 83
Regulatory protein AraC Homeodomain-like 82
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
Cytochrome c Cytochrome c 84
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 84
MalF N-terminal region-like MetI-like 81
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 85
Nucleotide cyclase TPR-like 86
CheY-like CheY-like 88
"Winged helix" DNA-binding domain Chorismate lyase-like 71
Folate-binding domain Aminomethyltransferase beta-barrel domain 74
Trypsin-like serine proteases PDZ domain-like 74
TPR-like TPR-like 76
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 74
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 71
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 71
HlyD-like secretion proteins HlyD-like secretion proteins 73
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 62
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 65
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 63
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 62
E set domains (Trans)glycosidases 65
CheY-like P-loop containing nucleoside triphosphate hydrolases 62
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 64
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 63
ParB/Sulfiredoxin KorB DNA-binding domain-like 61
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 61
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 62
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 61
P-loop containing nucleoside triphosphate hydrolases TPR-like 65
PGBD-like L,D-transpeptidase catalytic domain-like 53
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 53
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 54
PDZ domain-like PDZ domain-like 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 53
"Winged helix" DNA-binding domain PLP-dependent transferases 51
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 51
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 51
MetI-like MetI-like 52
CheY-like Homeodomain-like 51
HMA, heavy metal-associated domain HAD-like 53
Lysozyme-like beta-lactamase/transpeptidase-like 53
E set domains Glycosyl hydrolase domain 54
Galactose-binding domain-like (Trans)glycosidases 53
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 53
Homeodomain-like SIS domain 51
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 54
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 53
Translation proteins EF-G C-terminal domain-like 43
GroEL equatorial domain-like GroEL apical domain-like 41
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 42
PreATP-grasp domain Single hybrid motif 43
(Trans)glycosidases Class I glutamine amidotransferase-like 41
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 43
CBS-domain pair FAD-binding/transporter-associated domain-like 41
lambda repressor-like DNA-binding domains RmlC-like cupins 43
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 42
RmlC-like cupins Homeodomain-like 41
Cyclophilin-like PH0987 N-terminal domain-like 42
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 42
Phospholipase D/nuclease Phospholipase D/nuclease 44
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
Glutathione synthetase ATP-binding domain-like Single hybrid motif 43
FAD/NAD(P)-binding domain Folate-binding domain 42
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 44
beta-Roll beta-Roll 44
GroEL equatorial domain-like GroEL-intermediate domain like 41
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 41
GroEL-intermediate domain like GroEL apical domain-like 41
Alpha-L RNA-binding motif Pseudouridine synthase 42
PLP-binding barrel Alanine racemase C-terminal domain-like 41
Rudiment single hybrid motif Single hybrid motif 43
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 44
Chaperone J-domain HSP40/DnaJ peptide-binding domain 33
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 31
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Pectin lyase-like Pectin lyase-like 33
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
GAF domain-like CheY-like 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
TolB, N-terminal domain TPR-like 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
Cadherin-like Cadherin-like 33
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 32
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 32
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 31
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Single hybrid motif CoA-dependent acyltransferases 31
Homeodomain-like Ribonuclease H-like 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
ClpP/crotonase ClpP/crotonase 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
PurM N-terminal domain-like PurM C-terminal domain-like 32
Lysozyme-like PGBD-like 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
Homeodomain-like Probable bacterial effector-binding domain 31
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 33
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 31
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 32
ACT-like ACT-like 33
alpha/beta-Hydrolases alpha/beta-Hydrolases 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
PYP-like sensor domain (PAS domain) GAF domain-like 33
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 32
Pectin lyase-like Autotransporter 33
GAF domain-like Homodimeric domain of signal transducing histidine kinase 33
RuvA domain 2-like Nucleic acid-binding proteins 33
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 33
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 33
Cupredoxins Cupredoxins 32
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 32
GAF domain-like Nucleotide cyclase 33
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Nucleotide-binding domain Nucleotide-binding domain 21
Nucleotidyltransferase ACT-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
ISP domain Bet v1-like 21
CheY-like Methylesterase CheB, C-terminal domain 21
Sigma2 domain of RNA polymerase sigma factors TPR-like 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 22
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
ACT-like Formyltransferase 21
MgtE N-terminal domain-like CBS-domain pair 21
Galactose mutarotase-like Six-hairpin glycosidases 22
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
GAF domain-like EAL domain-like 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
CheY-like Nucleotide cyclase 22
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
alpha-helical ferredoxin Nucleotide-binding domain 21
MetI-like P-loop containing nucleoside triphosphate hydrolases 22
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 21
AGR C 984p-like AGR C 984p-like 22
MgtE N-terminal domain-like MgtE membrane domain-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
MFS general substrate transporter MFS general substrate transporter 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
FAD-linked reductases, C-terminal domain Folate-binding domain 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
Histidine-containing phosphotransfer domain, HPT domain CheW-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
PGBD-like PGBD-like 22
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 22
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 21
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 21
Nucleotidylyl transferase Alpha-L RNA-binding motif 21
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 22
HAMP domain-like PYP-like sensor domain (PAS domain) 22
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
L30e-like alpha/beta knot 22
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
PDZ domain-like ClpP/crotonase 21
Aldolase post-HMGL domain-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
HAMP domain-like Nucleotide cyclase 22
Homeodomain-like NagB/RpiA/CoA transferase-like 21
DNA methylase specificity domain DNA methylase specificity domain 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 21
Macro domain-like Zn-dependent exopeptidases 21
CBS-domain pair MgtE membrane domain-like 21
Homodimeric domain of signal transducing histidine kinase CheW-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
Mechanosensitive channel protein MscS (YggB), C-terminal domain cAMP-binding domain-like 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
beta-Roll Cadherin-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
Sm-like ribonucleoproteins cAMP-binding domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 21
beta-lactamase/transpeptidase-like Sporulation related repeat 22
Nucleotide cyclase TolB, N-terminal domain 21
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 21
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Galactose mutarotase-like Galactose mutarotase-like 22
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 21
PK beta-barrel domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
FliG FliG 11
GIY-YIG endonuclease RuvA domain 2-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
S-adenosyl-L-methionine-dependent methyltransferases Glycoside hydrolase/deacetylase 11
Carbamate kinase-like PUA domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Caspase-like HCP-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Translation proteins ThrRS/AlaRS common domain 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
HD-domain/PDEase-like TGS-like 11
Ribonuclease H-like mu transposase, C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Putative DNA-binding domain lambda repressor-like DNA-binding domains 11
PPK N-terminal domain-like PHP14-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase alpha/beta-Hydrolases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Ribonuclease H-like RuvA domain 2-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Phage tail proteins Phage fibre proteins 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
GAF domain-like GAF domain-like 11
YlxR-like L30e-like 11
Oxidoreductase molybdopterin-binding domain E set domains 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
HlyD-like secretion proteins Outer membrane efflux proteins (OEP) 11
Aldolase Single hybrid motif 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Sensory domain-like HAMP domain-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
TPR-like Porins 11
TGS-like Class II aaRS ABD-related 11
E set domains E set domains 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Nqo5-like HydB/Nqo4-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Phosphoglucomutase, C-terminal domain Nucleotide-diphospho-sugar transferases 11
Nucleic acid-binding proteins BRCT domain 11
Alkaline phosphatase-like Concanavalin A-like lectins/glucanases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Cyclophilin-like Cyclophilin-like 11
DNA breaking-rejoining enzymes DNA breaking-rejoining enzymes 11
alpha/beta-Hydrolases C-terminal effector domain of the bipartite response regulators 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors DAK1/DegV-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
PHP14-like Phospholipase D/nuclease 11
Phage tail proteins gp5 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
PreATP-grasp domain Aldolase 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Putative DNA-binding domain RmlC-like cupins 11
Beta-D-glucan exohydrolase, C-terminal domain Anthrax protective antigen 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain NAD(P)-linked oxidoreductase 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Amine oxidase N-terminal region Amine oxidase N-terminal region 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Hairpin loop containing domain-like Caspase-like 11
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 11
Hsp33 domain HSP33 redox switch-like 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Ferritin-like Ferritin-like 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
CBS-domain pair Nucleotide cyclase 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
(Phosphotyrosine protein) phosphatases II Metallo-hydrolase/oxidoreductase 11
OmpA-like Prokaryotic lipoproteins and lipoprotein localization factors 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
(Trans)glycosidases (Trans)glycosidases 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 11
Ferritin-like HAD-like 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
"Winged helix" DNA-binding domain SCP-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Carbamate kinase-like ACT-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
E set domains Cadherin-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
HAMP domain-like EAL domain-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Hairpin loop containing domain-like Terpenoid cyclases/Protein prenyltransferases 11
CarD-like TRCF domain-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
PGBD-like Caspase-like 11
FAD-linked oxidoreductase ALDH-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
TGS-like Class II aaRS and biotin synthetases 11
TPR-like Terpenoid cyclases/Protein prenyltransferases 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Multiheme cytochromes TPR-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
RuvA domain 2-like RuvA domain 2-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Thioesterase/thiol ester dehydrase-isomerase 11
Putative DNA-binding domain C-terminal effector domain of the bipartite response regulators 11
PIN domain-like Ribonuclease H-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Thioredoxin-like Nqo1 middle domain-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
2Fe-2S ferredoxin-like ADC-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
EAL domain-like CBS-domain pair 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
RuvA domain 2-like BRCT domain 11
Translation proteins PRC-barrel domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
GAF domain-like Homeodomain-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Nudix "Winged helix" DNA-binding domain 11
Phage tail proteins Phage tail proteins 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Poly A polymerase C-terminal region-like ACT-like 11
Ferritin-like Calcium ATPase, transduction domain A 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
dUTPase-like dUTPase-like 11
YrdC/RibB RibA-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
ARM repeat TPR-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
GroES-like GroES-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
CheY-like HD-domain/PDEase-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
vWA-like TPR-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Formyltransferase FMT C-terminal domain-like 11
DNA-glycosylase Nudix 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
HRDC-like HRDC-like 11
Dihydrofolate reductase-like Dihydrofolate reductase-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Pectin lyase-like beta-Roll 11
DNA primase core P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like DNA/RNA polymerases 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Flavoproteins Riboflavin synthase domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
RNase III domain-like dsRNA-binding domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
Homeodomain-like mu transposase, C-terminal domain 11
Serine metabolism enzymes domain ACT-like 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Clc chloride channel CBS-domain pair 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
(Trans)glycosidases Anthrax protective antigen 11
PH0987 N-terminal domain-like Single hybrid motif 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PreATP-grasp domain PreATP-grasp domain 11
PreATP-grasp domain Cyclophilin-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
TGS-like ACT-like 11
Thioredoxin-like TPR-like 11
PGBD-like Hairpin loop containing domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Translation proteins Translation proteins 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Rhomboid-like TPR-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
HCP-like PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
ACP-like alpha/beta-Hydrolases 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
P-loop containing nucleoside triphosphate hydrolases Cysteine proteinases 11
GAF domain-like Phosphohistidine domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Tex N-terminal region-like RuvA domain 2-like 11
HD-domain/PDEase-like ACT-like 11
KorB DNA-binding domain-like Ribonuclease H-like 11
Nucleotidyltransferase TGS-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Rudiment single hybrid motif post-HMGL domain-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
PLP-dependent transferases NAD(P)-binding Rossmann-fold domains 11
Hairpin loop containing domain-like TPR-like 11
Rudiment single hybrid motif Aldolase 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Amine oxidase N-terminal region Amine oxidase catalytic domain 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
ADC synthase Class I glutamine amidotransferase-like 11
TGS-like ThrRS/AlaRS common domain 11
Phosphoglucomutase, first 3 domains Nucleotide-diphospho-sugar transferases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Class II aaRS and biotin synthetases Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
2Fe-2S ferredoxin-like FAD/NAD(P)-binding domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
NagB/RpiA/CoA transferase-like DAK1/DegV-like 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Acyl-CoA N-acyltransferases (Nat) TPR-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Phosphoglucomutase, C-terminal domain RmlC-like cupins 11
PK beta-barrel domain-like Riboflavin synthase domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Protein kinase-like (PK-like) PLP-dependent transferases 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
post-HMGL domain-like Single hybrid motif 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
PHP domain-like AF1531-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
NAD(P)-binding Rossmann-fold domains NAD(P)-linked oxidoreductase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
DAK1/DegV-like DhaL-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
"Winged helix" DNA-binding domain Nucleotidyltransferase 11
(Trans)glycosidases beta-Roll 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Rudiment single hybrid motif Cyclophilin-like 11
Class I glutamine amidotransferase-like YjgF-like 11
TerB-like Chaperone J-domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Acid phosphatase/Vanadium-dependent haloperoxidase Pectin lyase-like 11
Apolipoprotein A-I Apolipoprotein A-I 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
RuvA domain 2-like JAB1/MPN domain 11
Periplasmic binding protein-like II ACT-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Multiheme cytochromes ARM repeat 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
ALDH-like ALDH-like 11
Ribonuclease H-like DNA/RNA polymerases 11
RmlC-like cupins RmlC-like cupins 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Thioredoxin-like Nqo1C-terminal domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
6-phosphogluconate dehydrogenase C-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
YjeF N-terminal domain-like Ribokinase-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
PUA domain-like alpha/beta knot 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Nucleic acid-binding proteins GAD domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleotide-diphospho-sugar transferases Glycoside hydrolase/deacetylase 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
YebC-like PFL-like glycyl radical enzymes 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
gp5 N-terminal domain-like Phage fibre proteins 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Zinc beta-ribbon DNA primase core 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
C-terminal effector domain of the bipartite response regulators TolB, N-terminal domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
PreATP-grasp domain post-HMGL domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Ribosomal protein L6 Ribosomal protein L6 11
P-loop containing nucleoside triphosphate hydrolases ARM repeat 11
FAD/NAD(P)-binding domain Thioredoxin-like 11
L-aspartase-like Aldolase 11
Tex N-terminal region-like Ribonuclease H-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
PLP-dependent transferases PLP-dependent transferases 11
Bacterial muramidases Lysozyme-like 11
DNA clamp DNA clamp 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Radical SAM enzymes RuvA domain 2-like 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
PheT/TilS domain Putative DNA-binding domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Phosphoglucomutase, first 3 domains RmlC-like cupins 11
Acetyl-CoA synthetase-like ACP-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
NTF2-like C-terminal effector domain of the bipartite response regulators 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Ribonuclease H-like HRDC-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
CoA-dependent acyltransferases ACP-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
"Winged helix" DNA-binding domain Ribokinase-like 11
Single hybrid motif TK C-terminal domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Cyclophilin-like Single hybrid motif 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
4Fe-4S ferredoxins ADC-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11

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