SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Vibrio cholerae O395

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

779 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 391
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3520
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2814
Actin-like ATPase domain Actin-like ATPase domain 174
CheY-like C-terminal effector domain of the bipartite response regulators 152
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 146
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 142
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 136
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1310
Homodimeric domain of signal transducing histidine kinase CheY-like 1211
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1211
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 126
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 119
Nucleotide cyclase EAL domain-like 115
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 111
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 106
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 92
Homeodomain-like Homeodomain-like 94
CheY-like Homeodomain-like 92
CheY-like P-loop containing nucleoside triphosphate hydrolases 92
P-loop containing nucleoside triphosphate hydrolases Translation proteins 96
P-loop containing nucleoside triphosphate hydrolases MOP-like 82
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 86
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 86
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 83
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 72
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 71
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 73
Thioredoxin-like GST C-terminal domain-like 71
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 73
ACT-like ACT-like 75
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 62
PYP-like sensor domain (PAS domain) Nucleotide cyclase 65
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 62
MetI-like MetI-like 62
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 64
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 66
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 62
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 62
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 62
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 54
Translation proteins EF-G C-terminal domain-like 53
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54
Nucleic acid-binding proteins Nucleic acid-binding proteins 53
CheY-like Histidine-containing phosphotransfer domain, HPT domain 55
Homeodomain-like Ribonuclease H-like 52
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 51
Alpha-L RNA-binding motif Pseudouridine synthase 52
(Trans)glycosidases Glycosyl hydrolase domain 54
Thiolase-like Thiolase-like 52
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 53
Phage tail proteins Phage tail proteins 54
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 53
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 53
PYP-like sensor domain (PAS domain) CheY-like 55
CheY-like HD-domain/PDEase-like 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
E set domains (Trans)glycosidases 44
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Carbamate kinase-like ACT-like 43
(Trans)glycosidases Carbohydrate binding domain 44
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 41
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 43
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 41
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 42
PLP-binding barrel Alanine racemase C-terminal domain-like 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 43
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
PreATP-grasp domain Rudiment single hybrid motif 41
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Restriction endonuclease-like P-loop containing nucleoside triphosphate hydrolases 44
CheW-like CheY-like 42
GroES-like NAD(P)-binding Rossmann-fold domains 31
Histidine-containing phosphotransfer domain, HPT domain CheW-like 31
PK beta-barrel domain-like PK C-terminal domain-like 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Cytochrome c Cytochrome c 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
Chitinase insertion domain Carbohydrate binding domain 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Homodimeric domain of signal transducing histidine kinase CheW-like 31
HAD-like Calcium ATPase, transmembrane domain M 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
PurM N-terminal domain-like PurM C-terminal domain-like 32
CheY-like Methylesterase CheB, C-terminal domain 31
CBS-domain pair FAD-binding/transporter-associated domain-like 31
HMA, heavy metal-associated domain HAD-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
HlyD-like secretion proteins HlyD-like secretion proteins 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 32
CBS-domain pair MgtE membrane domain-like 31
MgtE N-terminal domain-like CBS-domain pair 31
PYP-like sensor domain (PAS domain) EAL domain-like 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Lysozyme-like beta-lactamase/transpeptidase-like 33
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 31
Nucleotidyltransferase HD-domain/PDEase-like 32
TPR-like TPR-like 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
gp5 N-terminal domain-like Phage fibre proteins 33
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 32
MgtE N-terminal domain-like MgtE membrane domain-like 31
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 33
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 32
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 33
PTS system IIB component-like Phoshotransferase/anion transport protein 33
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
Phage tail proteins Phage fibre proteins 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Phage tail proteins gp5 N-terminal domain-like 33
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 31
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 31
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 31
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 32
(Trans)glycosidases Chitinase insertion domain 33
Nucleotidyltransferase ACT-like 32
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
Calcium ATPase, transduction domain A HAD-like 32
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 31
HD-domain/PDEase-like ACT-like 32
GAF domain-like Nucleotide cyclase 32
Sensory domain-like PYP-like sensor domain (PAS domain) 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
Homeodomain-like SIS domain 31
Phospholipase D/nuclease Phospholipase D/nuclease 33
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 21
Nucleotidylyl transferase Alpha-L RNA-binding motif 21
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 21
HAMP domain-like CheY-like 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
TPR-like Nucleotide cyclase 22
RmlC-like cupins Homeodomain-like 21
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
E set domains E set domains 22
alpha-helical ferredoxin Nucleotide-binding domain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Nucleotidyltransferase TGS-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
TGS-like ACT-like 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
E set domains Carbohydrate binding domain 22
PKD domain PKD domain 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Actin-like ATPase domain HD-domain/PDEase-like 21
Trypsin-like serine proteases PDZ domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of B transposition protein 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
GroEL-intermediate domain like GroEL apical domain-like 21
GAF domain-like EAL domain-like 21
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
GAF domain-like HD-domain/PDEase-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
PDZ domain-like ClpP/crotonase 22
LysM domain LysM domain 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Putative DNA-binding domain Ribonuclease H-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
GroEL equatorial domain-like GroEL-intermediate domain like 21
CheY-like EAL domain-like 22
HPr-like Phoshotransferase/anion transport protein 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 22
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
lambda repressor-like DNA-binding domains RmlC-like cupins 21
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
HD-domain/PDEase-like HD-domain/PDEase-like 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
ACT-like P-loop containing nucleoside triphosphate hydrolases 22
Ribonuclease H-like DNA/RNA polymerases 22
post-HMGL domain-like Single hybrid motif 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Ribonuclease H-like mu transposase, C-terminal domain 21
Regulatory protein AraC Homeodomain-like 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
PDZ domain-like PDZ domain-like 22
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 22
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
PLP-dependent transferases PLP-dependent transferases 22
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 22
Zinc beta-ribbon Zinc beta-ribbon 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Aldolase post-HMGL domain-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
E set domains Glycosyl hydrolase domain 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
Periplasmic binding protein-like II Nucleotide cyclase 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
CheY-like CheY-like 22
Homeodomain-like mu transposase, C-terminal domain 21
"Winged helix" DNA-binding domain Actin-like ATPase domain 21
cAMP-binding domain-like CBS-domain pair 21
PilZ domain-like PilZ domain-like 21
HAMP domain-like Nucleotide cyclase 22
Putative DNA-binding domain mu transposase, C-terminal domain 21
L30e-like alpha/beta knot 21
Aldolase Single hybrid motif 21
CoA-dependent acyltransferases CoA-dependent acyltransferases 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 22
Translation proteins Ribosomal protein S5 domain 2-like 21
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Single hybrid motif CoA-dependent acyltransferases 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 22
"Winged helix" DNA-binding domain Chorismate lyase-like 21
Sensory domain-like Sporulation response regulatory protein Spo0B 21
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
cAMP-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Putative DNA-binding domain Homeodomain-like 21
HD-domain/PDEase-like TGS-like 21
EAL domain-like HD-domain/PDEase-like 21
GroEL equatorial domain-like GroEL apical domain-like 21
Metalloproteases ("zincins"), catalytic domain Galactose-binding domain-like 22
HRDC-like HRDC-like 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II CheY-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Pili subunits GspK insert domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
NTF2-like NTF2-like 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Galactose-binding domain-like (Trans)glycosidases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like PYP-like sensor domain (PAS domain) 11
PK beta-barrel domain-like Riboflavin synthase domain-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
PurS-like FGAM synthase PurL, linker domain 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
E set domains PKD domain 11
ACT-like PYP-like sensor domain (PAS domain) 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
HisI-like all-alpha NTP pyrophosphatases 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
PYP-like sensor domain (PAS domain) CBS-domain pair 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
CheC-like Surface presentation of antigens (SPOA) 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Quinoprotein alcohol dehydrogenase-like Homeodomain-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Lysozyme-like LysM domain 11
PHP domain-like P-loop containing nucleoside triphosphate hydrolases 11
Cadherin-like beta-Roll 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Carbohydrate-binding domain E set domains 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
TGS-like Class II aaRS ABD-related 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
RuvA domain 2-like BRCT domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
HCP-like Chaperone J-domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Lysozyme-like Carbohydrate binding domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
MOSC N-terminal domain-like 2Fe-2S ferredoxin-like 11
Sensory domain-like CheY-like 11
TerB-like Chaperone J-domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Trigger factor ribosome-binding domain FKBP-like 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
Hemerythrin-like Nucleotide cyclase 11
RuvA domain 2-like RuvA domain 2-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
CarD-like TRCF domain-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Calcium-dependent phosphotriesterase Nucleotide cyclase 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
TPR-like C-terminal effector domain of the bipartite response regulators 11
Calcium-dependent phosphotriesterase Homeodomain-like 11
MalF N-terminal region-like MetI-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
GspK insert domain-like GspK insert domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Ribokinase-like Nucleotidylyl transferase 11
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Single hybrid motif Single hybrid motif 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Metallo-hydrolase/oxidoreductase SCP-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
PMT central region-like alpha/beta-Hydrolases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
FliG FliG 11
Thioredoxin-like TPR-like 11
Periplasmic binding protein-like II GlnB-like 11
Cadherin-like Cadherin-like 11
Tricorn protease N-terminal domain PDZ domain-like 11
Periplasmic binding protein-like II Lysozyme-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins PRC-barrel domain 11
CalX-like beta-Roll 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
HAMP domain-like HD-domain/PDEase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
CalX-like CalX-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Starch-binding domain-like E set domains 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
DNA clamp DNA clamp 11
Nucleotide-diphospho-sugar transferases Protein kinase-like (PK-like) 11
DNA-glycosylase Nudix 11
LysM domain L,D-transpeptidase catalytic domain-like 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
Class II aaRS and biotin synthetases GAD domain-like 11
MOSC N-terminal domain-like Riboflavin synthase domain-like 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Carbohydrate binding domain Carbohydrate binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Translation proteins Translation proteins 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
Outer membrane efflux proteins (OEP) HlyD-like secretion proteins 11
Isochorismatase-like hydrolases ACP-like 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
"Winged helix" DNA-binding domain GAF domain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
vWA-like TPR-like 11
Phage tail proteins PGBD-like 11
PTS system IIB component-like PTS system IIB component-like 11
RuvA domain 2-like JAB1/MPN domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
YrdC/RibB RibA-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Starch-binding domain-like Starch-binding domain-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
ACT-like Homeodomain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Class II aaRS and biotin synthetases Translation proteins 11
MesJ substrate recognition domain-like PheT/TilS domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
TSP type-3 repeat OmpA-like 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Sensory domain-like GAF domain-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
HIT-like HIT-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Quinoprotein alcohol dehydrogenase-like Calcium-dependent phosphotriesterase 11
Phage fibre proteins PGBD-like 11
Ribonuclease H-like HRDC-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
PurS-like Class I glutamine amidotransferase-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Lamin A/C globular tail domain DNase I-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
CheY-like Ornithine decarboxylase C-terminal domain 11
MOSC N-terminal domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Tex N-terminal region-like RuvA domain 2-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Barwin-like endoglucanases Sporulation related repeat 11
Ribosomal protein L6 Ribosomal protein L6 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Metalloproteases ("zincins"), catalytic domain Collagen-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Sensory domain-like Sensory domain-like 11
PK beta-barrel domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotidylyl transferase tRNA-binding arm 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
YajQ-like YajQ-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
CheY-like TPR-like 11
Putative DNA-binding domain Translation proteins 11
CheY-like PLP-dependent transferases 11
Bacterial muramidases Lysozyme-like 11
Chorismate mutase II ACT-like 11
PHP14-like Phospholipase D/nuclease 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Glycoside hydrolase/deacetylase Carbohydrate binding domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain MukF C-terminal domain-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Zn-dependent exopeptidases LysM domain 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Tricorn protease N-terminal domain ClpP/crotonase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
ClpP/crotonase ClpP/crotonase 11
Sensory domain-like HD-domain/PDEase-like 11
CoA-dependent acyltransferases ACP-like 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
PIN domain-like Ribonuclease H-like 11
Acetyl-CoA synthetase-like ACP-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
(Trans)glycosidases PKD domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
DNA methylase specificity domain DNA methylase specificity domain 11
beta-Roll beta-Roll 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
Acyl-CoA N-acyltransferases (Nat) Thioesterase/thiol ester dehydrase-isomerase 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Galactose-binding domain-like Nucleotide cyclase 11
FKBP-like FKBP-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
OMPA-like OmpA-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Chitinase insertion domain PKD domain 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
Cytidine deaminase-like Cytidine deaminase-like 11
CheY-like PP2C-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
YVTN repeat-like/Quinoprotein amine dehydrogenase MetI-like 11
CheW-like CheW-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Flavoproteins Riboflavin synthase domain-like 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
PIN domain-like DNA/RNA polymerases 11
PKD domain Carbohydrate binding domain 11
Galactose mutarotase-like E set domains 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
Galactose-binding domain-like Galactose mutarotase-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Carbohydrate-binding domain (Trans)glycosidases 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
Pseudouridine synthase PUA domain-like 11
Zinc beta-ribbon DNA primase core 11
FAD-linked oxidoreductase ALDH-like 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
Leukocidin-like Ricin B-like lectins 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Nucleic acid-binding proteins BRCT domain 11
H-NS histone-like proteins H-NS histone-like proteins 11
GAF domain-like Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
ACT-like Formyltransferase 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Globin-like Riboflavin synthase domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
MFS general substrate transporter MFS general substrate transporter 11
EAL domain-like C-terminal effector domain of the bipartite response regulators 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
GAF domain-like Phosphohistidine domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Phospholipase D/nuclease LexA/Signal peptidase 11
alpha/beta-Hydrolases beta-Roll 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Translation proteins ThrRS/AlaRS common domain 11
PheT/TilS domain Putative DNA-binding domain 11
CheY-like cAMP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
RNase III domain-like dsRNA-binding domain-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
(Trans)glycosidases Galactose mutarotase-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
E set domains Six-hairpin glycosidases 11
NTF2-like Sec-C motif 11
Homeodomain-like TATA-box binding protein-like 11
CheY-like CheC-like 11
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleic acid-binding proteins GAD domain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
TATA-box binding protein-like DNA-glycosylase 11
Tricorn protease N-terminal domain Tricorn protease N-terminal domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
GAF domain-like CheY-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Hsp33 domain HSP33 redox switch-like 11
Macro domain-like Zn-dependent exopeptidases 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PurS-like PurM N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
PurS-like PurM C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
HCP-like TPR-like 11
Concanavalin A-like lectins/glucanases Sialidases 11
P-loop containing nucleoside triphosphate hydrolases LexA/Signal peptidase 11
Formyltransferase FMT C-terminal domain-like 11
Class II aaRS and biotin synthetases SufE/NifU 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
ALDH-like Dehydroquinate synthase-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
E set domains Chitinase insertion domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
TGS-like ThrRS/AlaRS common domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
PUA domain-like alpha/beta knot 11
UDP-Glycosyltransferase/glycogen phosphorylase Glycoside hydrolase/deacetylase 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
Ribonuclease H-like RuvA domain 2-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
GAF domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Periplasmic binding protein-like II ACT-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Kelch motif Kelch motif 11
Metalloproteases ("zincins"), catalytic domain PKD domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
PPK N-terminal domain-like PHP14-like 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Carbamate kinase-like PUA domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
UROD/MetE-like UROD/MetE-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
TGS-like Class II aaRS and biotin synthetases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
beta-N-acetylhexosaminidase-like domain E set domains 11
PMT central region-like beta-Roll 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Homeodomain-like DNA-glycosylase 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Peptide methionine sulfoxide reductase Mss4-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
gp5 N-terminal domain-like PGBD-like 11
HAD-like Ribosomal protein S5 domain 2-like 11
EAL domain-like CBS-domain pair 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Acyl-CoA N-acyltransferases (Nat) Nucleotidylyl transferase 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Sensory domain-like Nucleotide cyclase 11
LysM domain Duplicated hybrid motif 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
cAMP-binding domain-like Homodimeric domain of signal transducing histidine kinase 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Protease propeptides/inhibitors Subtilisin-like 11
CalX-like Cadherin-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
DeoB insert domain-like Alkaline phosphatase-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
PreATP-grasp domain PreATP-grasp domain 11
HAMP domain-like EAL domain-like 11

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