SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Psychromonas ingrahamii 37

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

741 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3714
Nucleotide cyclase EAL domain-like 329
PYP-like sensor domain (PAS domain) Nucleotide cyclase 3111
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 231
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2217
PYP-like sensor domain (PAS domain) EAL domain-like 227
Actin-like ATPase domain Actin-like ATPase domain 196
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 179
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 143
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 146
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 145
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1211
Homodimeric domain of signal transducing histidine kinase CheY-like 1211
CheY-like C-terminal effector domain of the bipartite response regulators 112
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 111
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 108
(Trans)glycosidases Glycosyl hydrolase domain 105
P-loop containing nucleoside triphosphate hydrolases MOP-like 101
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 102
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 108
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 95
MetI-like MetI-like 83
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 85
PYP-like sensor domain (PAS domain) CheY-like 86
Thioredoxin-like GST C-terminal domain-like 81
GroES-like NAD(P)-binding Rossmann-fold domains 72
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 73
Thiolase-like Thiolase-like 73
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 73
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 71
P-loop containing nucleoside triphosphate hydrolases Translation proteins 76
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 73
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 65
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 65
CheY-like Histidine-containing phosphotransfer domain, HPT domain 65
Cytochrome c Cytochrome c 64
PLP-binding barrel Alanine racemase C-terminal domain-like 63
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 63
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 63
Calcium ATPase, transmembrane domain M HAD-like 65
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 62
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 63
Calcium ATPase, transduction domain A HAD-like 65
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 63
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 61
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
CheY-like P-loop containing nucleoside triphosphate hydrolases 51
PurM N-terminal domain-like PurM C-terminal domain-like 52
Alpha-L RNA-binding motif Pseudouridine synthase 51
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 52
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 53
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 51
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 51
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 52
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 54
Homeodomain-like Ribonuclease H-like 51
CheY-like Homeodomain-like 51
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Single hybrid motif CoA-dependent acyltransferases 43
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 42
CheY-like EAL domain-like 43
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 42
Translation proteins EF-G C-terminal domain-like 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
ACT-like ACT-like 44
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 42
Pentapeptide repeat-like Pentapeptide repeat-like 43
PreATP-grasp domain Rudiment single hybrid motif 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Phospholipase D/nuclease Phospholipase D/nuclease 43
E set domains (Trans)glycosidases 42
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
TPR-like TPR-like 44
E set domains Glycosyl hydrolase domain 42
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
Nucleotidyltransferase HD-domain/PDEase-like 32
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
HD-domain/PDEase-like ACT-like 32
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
CheY-like Nucleotide cyclase 32
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
GroEL equatorial domain-like GroEL-intermediate domain like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
RuvA domain 2-like Nucleic acid-binding proteins 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 32
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 32
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 32
GroEL-intermediate domain like GroEL apical domain-like 32
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
FKBP-like Triger factor/SurA peptide-binding domain-like 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
"Winged helix" DNA-binding domain Chorismate lyase-like 31
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 32
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
GroEL equatorial domain-like GroEL apical domain-like 32
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Chaperone J-domain HSP40/DnaJ peptide-binding domain 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Lysozyme-like beta-lactamase/transpeptidase-like 32
HMA, heavy metal-associated domain HAD-like 33
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 32
Nucleotidyltransferase ACT-like 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 32
TrkA C-terminal domain-like TrkA C-terminal domain-like 33
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 32
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
LeuD/IlvD-like Aconitase iron-sulfur domain 32
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
CheY-like CheY-like 33
HD-domain/PDEase-like TGS-like 21
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
MgtE N-terminal domain-like MgtE membrane domain-like 21
S-adenosyl-L-methionine-dependent methyltransferases Tropomyosin 21
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Tropomyosin PYP-like sensor domain (PAS domain) 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
Phage tail proteins Phage tail proteins 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
ClpP/crotonase ClpP/crotonase 22
Methylesterase CheB, C-terminal domain Tropomyosin 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
CBS-domain pair MgtE membrane domain-like 21
cAMP-binding domain-like CBS-domain pair 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 21
L30e-like alpha/beta knot 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
MgtE N-terminal domain-like CBS-domain pair 21
Phage tail proteins gp5 N-terminal domain-like 21
Homeodomain-like SIS domain 21
Carbamate kinase-like ACT-like 22
Flavoproteins Riboflavin synthase domain-like 21
"Winged helix" DNA-binding domain PLP-dependent transferases 21
Thiolase-like FabD/lysophospholipase-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 22
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
N-terminal domain of bifunctional PutA protein ALDH-like 21
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Carboxypeptidase regulatory domain-like Carboxypeptidase regulatory domain-like 22
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
TGS-like ACT-like 21
GroES-like GroES-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 21
PP2C-like Protein kinase-like (PK-like) 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
LysM domain LysM domain 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
(Trans)glycosidases Galactose-binding domain-like 22
P-loop containing nucleoside triphosphate hydrolases TPR-like 22
Formyltransferase FMT C-terminal domain-like 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 21
Nucleotidyltransferase TGS-like 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
ACT-like Formyltransferase 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Hypothetical protein PA1324 TSP type-3 repeat 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
HD-domain/PDEase-like HD-domain/PDEase-like 22
Galactose mutarotase-like (Trans)glycosidases 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
DNA methylase specificity domain DNA methylase specificity domain 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain Tropomyosin 21
Translation proteins Ribosomal protein S5 domain 2-like 21
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 22
ALDH-like ALDH-like 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
GAF domain-like Nucleotide cyclase 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
P-loop containing nucleoside triphosphate hydrolases LexA/Signal peptidase 22
PK beta-barrel domain-like PK C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Zinc beta-ribbon Zinc beta-ribbon 22
Ribonuclease H-like DNA/RNA polymerases 22
FAD-linked oxidoreductase ALDH-like 21
HCP-like HCP-like 22
Trypsin-like serine proteases PDZ domain-like 22
Aldolase post-HMGL domain-like 22
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
EAL domain-like CBS-domain pair 22
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Hypothetical protein PA1324 alpha/beta-Hydrolases 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Fibronectin type III beta-Roll 11
Integrin alpha N-terminal domain PKD domain 11
PurS-like PurM C-terminal domain-like 11
Periplasmic binding protein-like II Nucleotide cyclase 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
HAD-like Ribosomal protein S5 domain 2-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
DNA primase core DNA primase DnaG, C-terminal domain 11
RNase III domain-like dsRNA-binding domain-like 11
Invasin/intimin cell-adhesion fragments DPP6 N-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Galactose-binding domain-like Galactose mutarotase-like 11
GAF domain-like HD-domain/PDEase-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Cysteine proteinases Glutathione synthetase ATP-binding domain-like 11
RmlC-like cupins RmlC-like cupins 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Hypothetical protein PA1324 Fibronectin type III 11
PYP-like sensor domain (PAS domain) GAF domain-like 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
UROD/MetE-like UROD/MetE-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
Pseudouridine synthase PUA domain-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Globin-like Riboflavin synthase domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PurS-like PurM N-terminal domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
TGS-like Class II aaRS ABD-related 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Cupredoxins Cytochrome c 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
HisI-like all-alpha NTP pyrophosphatases 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
TGS-like Class II aaRS and biotin synthetases 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Ribokinase-like Nucleotidylyl transferase 11
HIT-like HIT-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
YrdC/RibB RibA-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
CRISPR-associated protein CRISPR-associated protein 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
TSP type-3 repeat alpha/beta-Hydrolases 11
PTS system IIB component-like PTS system IIB component-like 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
PDZ domain-like PDZ domain-like 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 11
Nucleotidylyl transferase Riboflavin kinase-like 11
TrkA C-terminal domain-like MFS general substrate transporter 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Carboxypeptidase regulatory domain-like beta-Roll 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
HAMP domain-like GAF domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
Ammonium transporter Nucleotide cyclase 11
Rudiment single hybrid motif Single hybrid motif 11
post-HMGL domain-like Single hybrid motif 11
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 11
Fibronectin type III Fibronectin type III 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
Carboxypeptidase regulatory domain-like TSP type-3 repeat 11
Galactose mutarotase-like Starch-binding domain-like 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
MesJ substrate recognition domain-like PheT/TilS domain 11
PHP14-like Phospholipase D/nuclease 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
LysM domain L,D-transpeptidase catalytic domain-like 11
Resolvase-like Homeodomain-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Ribosome binding protein Y (YfiA homologue) Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Aldolase Single hybrid motif 11
gamma-Crystallin-like gamma-Crystallin-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Zinc beta-ribbon DNA primase core 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
PreATP-grasp domain Single hybrid motif 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
Metallo-dependent phosphatases ADP-ribosylglycohydrolase 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Zn-dependent exopeptidases LysM domain 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
TerB-like Chaperone J-domain 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Ferritin-like Calcium ATPase, transduction domain A 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Macro domain-like Zn-dependent exopeptidases 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases Zinc beta-ribbon 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Single hybrid motif Single hybrid motif 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Hsp33 domain HSP33 redox switch-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
MalF N-terminal region-like MetI-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
TSP type-3 repeat TSP type-3 repeat 11
Thioredoxin-like Nqo1 middle domain-like 11
cAMP-binding domain-like Homodimeric domain of signal transducing histidine kinase 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Ammonium transporter PYP-like sensor domain (PAS domain) 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Glucose permease domain IIB Glucose permease domain IIB 11
Actin-like ATPase domain HCP-like 11
RCC1/BLIP-II RCC1/BLIP-II 11
Nucleotidylyl transferase tRNA-binding arm 11
Lysozyme-like LysM domain 11
TSP type-3 repeat beta-Roll 11
Carboxypeptidase regulatory domain-like Galactose-binding domain-like 11
GroEL-intermediate domain like GroEL-intermediate domain like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Nucleic acid-binding proteins BRCT domain 11
Periplasmic binding protein-like II ACT-like 11
Starch-binding domain-like PHP domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
DNA clamp DNA clamp 11
PheT/TilS domain Putative DNA-binding domain 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
HRDC-like HRDC-like 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
HAD-like S-adenosyl-L-methionine-dependent methyltransferases 11
Carbamate kinase-like PUA domain-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
PurS-like FGAM synthase PurL, linker domain 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nudix Nudix 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Tex N-terminal region-like RuvA domain 2-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
PUA domain-like alpha/beta knot 11
Barwin-like endoglucanases Sporulation related repeat 11
GAF domain-like CheY-like 11
PTS system IIB component-like Phoshotransferase/anion transport protein 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
FKBP-like FKBP-like 11
Acetyl-CoA synthetase-like Heme oxygenase-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
DNA polymerase beta, N-terminal domain-like RuvA domain 2-like 11
TPR-like Nucleotide cyclase 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
GspK insert domain-like GspK insert domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
CheY-like cAMP-binding domain-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Putative DNA-binding domain Translation proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Ribonuclease H-like RuvA domain 2-like 11
Nucleoside hydrolase Class I glutamine amidotransferase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
vWA-like TPR-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
ClpP/crotonase Glutathione synthetase ATP-binding domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
PLP-dependent transferases PLP-dependent transferases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Translation proteins PRC-barrel domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
TGS-like ThrRS/AlaRS common domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
SIS domain CBS-domain pair 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Periplasmic binding protein-like II CheY-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PIN domain-like Ribonuclease H-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Class I glutamine amidotransferase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PDZ domain-like ClpP/crotonase 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Nucleotidyltransferase Nucleotidyltransferase 11
Ribonuclease H-like HRDC-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
RuvA domain 2-like RuvA domain 2-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
YajQ-like YajQ-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Cysteine proteinases PreATP-grasp domain 11
Hypothetical protein PA1324 Carboxypeptidase regulatory domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Thiolase-like ACP-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
LEA14-like LEA14-like 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
(Trans)glycosidases Starch-binding domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Thioredoxin-like TPR-like 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Lamin A/C globular tail domain DNase I-like 11
Pili subunits GspK insert domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Carboxypeptidase regulatory domain-like Fibronectin type III 11
Zn-dependent exopeptidases Fibronectin type III 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
2Fe-2S ferredoxin-like HydA/Nqo6-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Ferritin-like HAD-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Ribokinase-like Thiamin phosphate synthase 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
ACP-like ACP-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Phoshotransferase/anion transport protein HPr-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Bacterial muramidases Lysozyme-like 11
RuvA domain 2-like BRCT domain 11
PIN domain-like DNA/RNA polymerases 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Glycosyl hydrolase domain Starch-binding domain-like 11
FabD/lysophospholipase-like ACP-like 11
beta-Roll beta-Roll 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Tex N-terminal region-like Ribonuclease H-like 11
cAMP-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Periplasmic binding protein-like II GlnB-like 11
NTF2-like TerB-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
ALDH-like Dehydroquinate synthase-like 11
Translation proteins Translation proteins 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Concanavalin A-like lectins/glucanases Galactose-binding domain-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
GAF domain-like Phosphohistidine domain 11
PurS-like Class I glutamine amidotransferase-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
DeoB insert domain-like Alkaline phosphatase-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Phospholipase D/nuclease LexA/Signal peptidase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
ClpP/crotonase NfeD domain-like 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
PPK N-terminal domain-like PHP14-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
ClpP/crotonase PreATP-grasp domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
PKD domain PKD domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Periplasmic binding protein-like II Lysozyme-like 11
ClpP/crotonase Rudiment single hybrid motif 11
PreATP-grasp domain Methylglyoxal synthase-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
L-aspartase-like Acyl-CoA N-acyltransferases (Nat) 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
ADC-like P-loop containing nucleoside triphosphate hydrolases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
ClpP/crotonase Single hybrid motif 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Nucleoside hydrolase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Ammonium transporter EAL domain-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Translation proteins ThrRS/AlaRS common domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
CBS-domain pair Nucleotide cyclase 11
DNA-glycosylase Nudix 11
MOSC N-terminal domain-like 2Fe-2S ferredoxin-like 11
L domain-like Protein kinase-like (PK-like) 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
Trigger factor ribosome-binding domain FKBP-like 11
Fibronectin type III TSP type-3 repeat 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
PreATP-grasp domain PreATP-grasp domain 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
CarD-like TRCF domain-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Hypothetical protein PA1324 beta-Roll 11
NTF2-like Sec-C motif 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
HAMP domain-like CheY-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
OMPA-like OmpA-like 11
Galactose-binding domain-like Galactose-binding domain-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
ADC-like Cdc48 domain 2-like 11
Nucleic acid-binding proteins GAD domain-like 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
FliG FliG 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11

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