SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Mesorhizobium sp. BNC1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

683 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4314
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 403
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 274
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 235
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 224
P-loop containing nucleoside triphosphate hydrolases MOP-like 221
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2214
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 185
"Winged helix" DNA-binding domain GAF domain-like 172
Enolase N-terminal domain-like Enolase C-terminal domain-like 172
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 163
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 153
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 145
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 145
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1312
GroES-like NAD(P)-binding Rossmann-fold domains 132
Actin-like ATPase domain Actin-like ATPase domain 125
Thioredoxin-like GST C-terminal domain-like 111
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1110
CheY-like C-terminal effector domain of the bipartite response regulators 112
HAD-like Calcium ATPase, transmembrane domain M 109
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 109
Calcium ATPase, transduction domain A HAD-like 109
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 102
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 95
ParB/Sulfiredoxin KorB DNA-binding domain-like 92
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 92
MetI-like MetI-like 93
Homeodomain-like Homeodomain-like 93
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 98
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 93
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 91
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 83
Thiolase-like Thiolase-like 82
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 83
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 81
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 85
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 81
Homodimeric domain of signal transducing histidine kinase CheY-like 76
Nucleotide cyclase EAL domain-like 74
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 72
cAMP-binding domain-like "Winged helix" DNA-binding domain 71
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 72
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 71
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 64
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 61
(Trans)glycosidases Glycosyl hydrolase domain 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 65
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 61
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 63
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 66
Class I glutamine amidotransferase-like Homeodomain-like 62
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 64
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 63
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 62
PreATP-grasp domain Rudiment single hybrid motif 63
Cupredoxins Cupredoxins 53
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 53
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 53
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 53
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
PLP-binding barrel Alanine racemase C-terminal domain-like 51
CheY-like P-loop containing nucleoside triphosphate hydrolases 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 51
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 55
Pectin lyase-like Autotransporter 54
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 53
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 53
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 53
HMA, heavy metal-associated domain HAD-like 55
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 51
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 52
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 55
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 52
PYP-like sensor domain (PAS domain) CheY-like 55
Ribonuclease H-like mu transposase, C-terminal domain 41
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 44
Triger factor/SurA peptide-binding domain-like FKBP-like 44
E set domains (Trans)glycosidases 43
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 42
Lysozyme-like beta-lactamase/transpeptidase-like 43
Cytochrome c Cytochrome c 43
"Winged helix" DNA-binding domain PLP-dependent transferases 41
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 42
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 42
Translation proteins EF-G C-terminal domain-like 43
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 42
MoeA N-terminal region -like MoeA C-terminal domain-like 42
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 41
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 42
Trypsin-like serine proteases PDZ domain-like 32
PYP-like sensor domain (PAS domain) Nucleotide cyclase 32
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
PDZ domain-like PDZ domain-like 32
CheY-like Homeodomain-like 31
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
PYP-like sensor domain (PAS domain) EAL domain-like 32
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 31
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
GroEL equatorial domain-like GroEL apical domain-like 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
CheY-like CheY-like 33
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 31
"Winged helix" DNA-binding domain Chorismate lyase-like 31
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
E set domains Glycosyl hydrolase domain 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
RmlC-like cupins Homeodomain-like 31
beta-Roll beta-Roll 33
"Winged helix" DNA-binding domain Actin-like ATPase domain 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Acetyl-CoA synthetase-like ACP-like 33
Pectin lyase-like Pectin lyase-like 33
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 33
L30e-like alpha/beta knot 31
PreATP-grasp domain Single hybrid motif 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
Regulatory protein AraC Homeodomain-like 32
ACT-like ACT-like 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Homeodomain-like SIS domain 31
MalF N-terminal region-like MetI-like 31
Rudiment single hybrid motif Single hybrid motif 32
Glutathione synthetase ATP-binding domain-like Single hybrid motif 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Folate-binding domain Aminomethyltransferase beta-barrel domain 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Phospholipase D/nuclease Phospholipase D/nuclease 33
Lysozyme-like PGBD-like 31
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 31
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 33
Alpha-L RNA-binding motif Pseudouridine synthase 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
ALDH-like ALDH-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 22
Aldolase post-HMGL domain-like 22
GroEL equatorial domain-like GroEL-intermediate domain like 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 22
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 21
HlyD-like secretion proteins HlyD-like secretion proteins 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 22
CoA-dependent acyltransferases ACP-like 22
FMN-binding split barrel UbiD C-terminal domain-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
CoA-dependent acyltransferases CoA-dependent acyltransferases 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
ClpP/crotonase ClpP/crotonase 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Acyl-CoA N-acyltransferases (Nat) NAD(P)-binding Rossmann-fold domains 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 22
PurM N-terminal domain-like PurM C-terminal domain-like 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Single hybrid motif CoA-dependent acyltransferases 22
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
YWTD domain Hypothetical protein PA1324 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
Resolvase-like Homeodomain-like 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 22
PLP-dependent transferases PLP-dependent transferases 21
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 22
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Nucleotidyltransferase ACT-like 22
alpha-helical ferredoxin Nucleotide-binding domain 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
GroEL-intermediate domain like GroEL apical domain-like 21
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
FAD/NAD(P)-binding domain ISP domain 11
Thiolase-like ACP-like 11
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Carbamate kinase-like PUA domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
CBS-domain pair MgtE membrane domain-like 11
Poly A polymerase C-terminal region-like ACT-like 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
NAD(P)-binding Rossmann-fold domains Folate-binding domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
TGS-like Class II aaRS and biotin synthetases 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Serine metabolism enzymes domain ACT-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Ferritin-like HAD-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase PLP-dependent transferases 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
GAF domain-like Phosphohistidine domain 11
Nucleic acid-binding proteins GAD domain-like 11
Thioredoxin-like PLP-dependent transferases 11
TGS-like ACT-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
TGS-like Class II aaRS ABD-related 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Nucleic acid-binding proteins BRCT domain 11
Nucleotidylyl transferase tRNA-binding arm 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase Acetyl-CoA synthetase-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
FabD/lysophospholipase-like ACP-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
ACP-like PLP-dependent transferases 11
Hairpin loop containing domain-like Terpenoid cyclases/Protein prenyltransferases 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Carbamate kinase-like ACT-like 11
ACP-like ACP-like 11
FKBP-like FKBP-like 11
Triger factor/SurA peptide-binding domain-like Triger factor/SurA peptide-binding domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
GntR ligand-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase CoA-dependent acyltransferases 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
TerB-like Chaperone J-domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
4Fe-4S ferredoxins ADC-like 11
2Fe-2S ferredoxin-like ADC-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
E set domains E set domains 11
TGS-like ThrRS/AlaRS common domain 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Ferritin-like Calcium ATPase, transduction domain A 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
ITPase-like P-loop containing nucleoside triphosphate hydrolases 11
Zinc beta-ribbon DNA primase core 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Ribonuclease H-like RuvA domain 2-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Cna protein B-type domain Pectin lyase-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Translation proteins ThrRS/AlaRS common domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Hypothetical protein PA1324 Pectin lyase-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
FabD/lysophospholipase-like PLP-dependent transferases 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Ribosome binding protein Y (YfiA homologue) Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain NAD(P)-binding Rossmann-fold domains 11
Thioredoxin-like TPR-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Ribonuclease H-like HRDC-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Ferritin-like MFS general substrate transporter 11
Glycoside hydrolase/deacetylase UraD-Like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
RuvA domain 2-like RuvA domain 2-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Galactose-binding domain-like (Trans)glycosidases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Aldolase Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
ACP-like alpha/beta-Hydrolases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Ribosomal protein L6 Ribosomal protein L6 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
HD-domain/PDEase-like TGS-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Nucleotidyltransferase Nucleotidyltransferase 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Hypothetical protein PA1324 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
CheY-like Nucleotide cyclase 11
post-HMGL domain-like Single hybrid motif 11
MFS general substrate transporter MFS general substrate transporter 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PreATP-grasp domain PreATP-grasp domain 11
Transmembrane di-heme cytochromes 4Fe-4S ferredoxins 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
NAD(P)-binding Rossmann-fold domains Sec-C motif 11
NAD(P)-binding Rossmann-fold domains Aminomethyltransferase beta-barrel domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Putative DNA-binding domain Periplasmic binding protein-like II 11
Thioredoxin-like Nqo1C-terminal domain-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
ACT-like Formyltransferase 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
PreATP-grasp domain Aldolase 11
PRTase-like PRTase-like 11
Nudix "Winged helix" DNA-binding domain 11
FAD-linked oxidoreductase ALDH-like 11
"Winged helix" DNA-binding domain SCP-like 11
Subtilisin-like Pectin lyase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
dUTPase-like dUTPase-like 11
PPK N-terminal domain-like PHP14-like 11
Rudiment single hybrid motif Aldolase 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
TPR-like C-terminal effector domain of the bipartite response regulators 11
Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors 11
Thioredoxin-like Nqo1 middle domain-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
DNA breaking-rejoining enzymes DNA breaking-rejoining enzymes 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
DNA clamp DNA clamp 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PUA domain-like alpha/beta knot 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
PGBD-like PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Cupredoxins Cytochrome c 11
Translation proteins PRC-barrel domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Radical SAM enzymes RuvA domain 2-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
FabD/lysophospholipase-like CoA-dependent acyltransferases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
PheT/TilS domain Putative DNA-binding domain 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
Hsp33 domain HSP33 redox switch-like 11
YjeF N-terminal domain-like Ribokinase-like 11
TPR-like "Winged helix" DNA-binding domain 11
PLP-dependent transferases CoA-dependent acyltransferases 11
Rudiment single hybrid motif post-HMGL domain-like 11
HD-domain/PDEase-like ACT-like 11
Acyl-CoA N-acyltransferases (Nat) Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Tex N-terminal region-like RuvA domain 2-like 11
Thiolase-like CoA-dependent acyltransferases 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain LysM domain 11
YrdC/RibB RibA-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Galactose mutarotase-like E set domains 11
PLP-dependent transferases NAD(P)-binding Rossmann-fold domains 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
ClpP/crotonase NfeD domain-like 11
FliG FliG 11
GroES-like GroES-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
PHP14-like Phospholipase D/nuclease 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
PIN domain-like Ribonuclease H-like 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
FMN-binding split barrel GAF domain-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
Bacterial muramidases Lysozyme-like 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
(Trans)glycosidases (Trans)glycosidases 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Nucleic acid-binding proteins PheT/TilS domain 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
HCP-like PGBD-like 11
WD40 repeat-like Cytochrome c 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Thioredoxin-like Six-hairpin glycosidases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
GAF domain-like CheY-like 11
Subtilisin-like Autotransporter 11
Thiolase-like Acetyl-CoA synthetase-like 11
AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
DeoB insert domain-like Alkaline phosphatase-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
FabD/lysophospholipase-like Acetyl-CoA synthetase-like 11
LysM domain Duplicated hybrid motif 11
FAD/NAD(P)-binding domain Galactose-binding domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
CheY-like Methylesterase CheB, C-terminal domain 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
ADC synthase Class I glutamine amidotransferase-like 11
YlxR-like L30e-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Macro domain-like Zn-dependent exopeptidases 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
PRC-barrel domain PRC-barrel domain 11
Ribonuclease H-like CBS-domain pair 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
PDZ domain-like ClpP/crotonase 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
UROD/MetE-like UROD/MetE-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
RNase III domain-like dsRNA-binding domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
Ferritin-like Ferritin-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Calcium-dependent phosphotriesterase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
CarD-like TRCF domain-like 11
DNA-glycosylase Nudix 11
RuvA domain 2-like JAB1/MPN domain 11
HRDC-like HRDC-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Formyltransferase FMT C-terminal domain-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Single hybrid motif TK C-terminal domain-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
RuvA domain 2-like BRCT domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
TPR-like TPR-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
alpha-helical ferredoxin ARM repeat 11
Thiolase-like FabD/lysophospholipase-like 11
Nucleotidyltransferase TGS-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
CheW-like CheY-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
(Trans)glycosidases Class I glutamine amidotransferase-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
PIN domain-like DNA/RNA polymerases 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Heme-dependent peroxidases beta-Roll 11
PLP-dependent transferases Acetyl-CoA synthetase-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
TPR-like LysM domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
PreATP-grasp domain post-HMGL domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Thiolase-like PLP-dependent transferases 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Cation efflux protein transmembrane domain-like Band 7/SPFH domain 11
Periplasmic binding protein-like II ACT-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Metallo-dependent phosphatases LysM domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Ribonuclease H-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
YebC-like PFL-like glycyl radical enzymes 11
beta-lactamase/transpeptidase-like Sporulation related repeat 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Translation proteins Translation proteins 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
PilZ domain-like PilZ domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
PHP domain-like AF1531-like 11
GAF domain-like GAF domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
PGBD-like Hairpin loop containing domain-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
AhpD-like AhpD-like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]