SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Shewanella sp. MR-4

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

793 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 441
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3518
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2813
Nucleotide cyclase EAL domain-like 2415
PYP-like sensor domain (PAS domain) Nucleotide cyclase 2014
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 176
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 155
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 155
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 157
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 155
Actin-like ATPase domain Actin-like ATPase domain 156
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 155
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 155
CheY-like C-terminal effector domain of the bipartite response regulators 151
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1413
PYP-like sensor domain (PAS domain) EAL domain-like 138
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 122
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 124
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 126
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 129
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 116
GAF domain-like Nucleotide cyclase 107
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 109
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 107
Homodimeric domain of signal transducing histidine kinase CheY-like 98
DPP6 N-terminal domain-like alpha/beta-Hydrolases 92
P-loop containing nucleoside triphosphate hydrolases Translation proteins 97
CheY-like Homeodomain-like 93
Thiolase-like Thiolase-like 93
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 93
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 81
Thioredoxin-like GST C-terminal domain-like 81
CheY-like P-loop containing nucleoside triphosphate hydrolases 82
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 85
ACT-like ACT-like 85
GroES-like NAD(P)-binding Rossmann-fold domains 72
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 76
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 73
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 64
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 63
Alpha-L RNA-binding motif Pseudouridine synthase 61
CheY-like Histidine-containing phosphotransfer domain, HPT domain 66
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 64
PYP-like sensor domain (PAS domain) CheY-like 65
Cytochrome c Cytochrome c 63
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 63
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
E set domains (Trans)glycosidases 54
GAF domain-like EAL domain-like 54
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 51
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 52
PurM N-terminal domain-like PurM C-terminal domain-like 52
PreATP-grasp domain Rudiment single hybrid motif 53
HlyD-like secretion proteins HlyD-like secretion proteins 52
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 52
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 55
TPR-like TPR-like 54
Homeodomain-like Homeodomain-like 54
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 52
P-loop containing nucleoside triphosphate hydrolases MOP-like 52
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
CheY-like CheY-like 55
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
(Trans)glycosidases Glycosyl hydrolase domain 43
CheY-like HD-domain/PDEase-like 42
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
Translation proteins EF-G C-terminal domain-like 43
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 32
CheW-like CheY-like 31
RmlC-like cupins Homeodomain-like 32
Nucleotidyltransferase HD-domain/PDEase-like 32
Single hybrid motif CoA-dependent acyltransferases 33
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
HD-domain/PDEase-like ACT-like 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
ClpP/crotonase ClpP/crotonase 33
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 32
PDZ domain-like ClpP/crotonase 33
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 33
Carbamate kinase-like ACT-like 33
Subtilisin-like Galactose-binding domain-like 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
Lysozyme-like beta-lactamase/transpeptidase-like 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
Nucleotidyltransferase ACT-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 33
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
PLP-binding barrel Alanine racemase C-terminal domain-like 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
PYP-like sensor domain (PAS domain) GAF domain-like 32
Galactose mutarotase-like E set domains 31
Nucleic acid-binding proteins RuvA domain 2-like 33
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 31
E set domains Glycosyl hydrolase domain 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
2Fe-2S ferredoxin-like alpha-helical ferredoxin 32
Phospholipase D/nuclease Phospholipase D/nuclease 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 32
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 33
TPR-like Nucleotide cyclase 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 33
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
NHL repeat Nucleotide cyclase 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
TGS-like ACT-like 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
Calcium ATPase, transduction domain A HAD-like 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
PreATP-grasp domain Single hybrid motif 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
Subtilisin-like PA domain 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Rudiment single hybrid motif Single hybrid motif 22
HD-domain/PDEase-like TGS-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
GAF domain-like HD-domain/PDEase-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
Nucleotidyltransferase TGS-like 21
Thioredoxin-like Thioredoxin-like 22
Leukotriene A4 hydrolase N-terminal domain ARM repeat 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Homodimeric domain of signal transducing histidine kinase CheW-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
Macro domain-like Zn-dependent exopeptidases 21
alpha-helical ferredoxin Nucleotide-binding domain 22
CBS-domain pair MgtE membrane domain-like 21
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Lysozyme-like LysM domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Calcium ATPase, transmembrane domain M HAD-like 22
Regulatory protein AraC Homeodomain-like 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
PA domain Zn-dependent exopeptidases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
GroES-like GroES-like 21
Zinc beta-ribbon Zinc beta-ribbon 22
NHL repeat PYP-like sensor domain (PAS domain) 22
PGBD-like L,D-transpeptidase catalytic domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Ribonuclease H-like DNA/RNA polymerases 22
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
MgtE N-terminal domain-like CBS-domain pair 21
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Translation proteins Ribosomal protein S5 domain 2-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
NHL repeat EAL domain-like 22
LysM domain LysM domain 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 22
vWA-like Quinoprotein alcohol dehydrogenase-like 21
Histidine-containing phosphotransfer domain, HPT domain CheW-like 21
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 22
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
CheY-like Methylesterase CheB, C-terminal domain 21
TSP type-3 repeat OmpA-like 22
Single hybrid motif Single hybrid motif 22
GAF domain-like Homeodomain-like 21
Periplasmic binding protein-like II Nucleotide cyclase 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
alpha/beta-Hydrolases alpha/beta-Hydrolases 22
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
CheY-like Nucleotide cyclase 22
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 21
PKD domain PKD domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Carbamate kinase-like PUA domain-like 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Heme-dependent peroxidases Heme-dependent peroxidases 21
ACT-like NAD(P)-binding Rossmann-fold domains 22
Metalloproteases ("zincins"), catalytic domain ARM repeat 21
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Trypsin-like serine proteases PDZ domain-like 22
MgtE N-terminal domain-like MgtE membrane domain-like 21
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
HMA, heavy metal-associated domain HAD-like 22
Lamin A/C globular tail domain DNase I-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
PDZ domain-like PDZ domain-like 22
Sensory domain-like PYP-like sensor domain (PAS domain) 22
Concanavalin A-like lectins/glucanases FAD-binding/transporter-associated domain-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Hemerythrin-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
post-HMGL domain-like Single hybrid motif 11
TGS-like Class II aaRS ABD-related 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
Lamin A/C globular tail domain PKD domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
PurS-like PurM N-terminal domain-like 11
Pili subunits GspK insert domain-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
PK beta-barrel domain-like PK C-terminal domain-like 11
DPP6 N-terminal domain-like Metallo-dependent hydrolases 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Periplasmic binding protein-like II Aldolase 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
L30e-like alpha/beta knot 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Calcium-dependent phosphotriesterase Nucleotide cyclase 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Calcium-dependent phosphotriesterase PYP-like sensor domain (PAS domain) 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
ACT-like Aldolase 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Periplasmic binding protein-like II GlnB-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
FKBP-like FKBP-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
PUA domain-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
C-terminal effector domain of the bipartite response regulators DPP6 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
PIN domain-like DNA/RNA polymerases 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Bacterial muramidases Lysozyme-like 11
DNA-glycosylase Nudix 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
HAMP domain-like CheY-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
HRDC-like HRDC-like 11
Pseudouridine synthase PUA domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
YrdC/RibB RibA-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
RuvA domain 2-like RuvA domain 2-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Tricorn protease N-terminal domain PDZ domain-like 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
NTF2-like Sec-C motif 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
RNase III domain-like dsRNA-binding domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
ClpP/crotonase PreATP-grasp domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
UROD/MetE-like UROD/MetE-like 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Periplasmic binding protein-like II CheY-like 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
PurS-like PurM C-terminal domain-like 11
Tricorn protease N-terminal domain Tricorn protease domain 2 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Multiheme cytochromes Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
FliG FliG 11
P-loop containing nucleoside triphosphate hydrolases Sporulation related repeat 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
PA domain Metalloproteases ("zincins"), catalytic domain 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
alpha-helical ferredoxin ADC-like 11
HAD-like Ribosomal protein S5 domain 2-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Tricorn protease N-terminal domain ClpP/crotonase 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Periplasmic binding protein-like I Homodimeric domain of signal transducing histidine kinase 11
Chorismate mutase II Periplasmic binding protein-like II 11
MOP-like MOP-like 11
4Fe-4S ferredoxins ADC-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Thiolase-like FabD/lysophospholipase-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
GAF domain-like Phosphohistidine domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
HD-domain/PDEase-like CBS-domain pair 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Sensory domain-like Sensory domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
PilZ domain-like PilZ domain-like 11
Thiolase-like ACP-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
RuvA domain 2-like BRCT domain 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Aldolase post-HMGL domain-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
TGS-like Class II aaRS and biotin synthetases 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
CheC-like Surface presentation of antigens (SPOA) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Homeodomain-like SIS domain 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
ClpP/crotonase Single hybrid motif 11
Subtilisin-like PKD domain 11
Carboxypeptidase regulatory domain-like Porins 11
Class II aaRS and biotin synthetases GAD domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
HCP-like HCP-like 11
Periplasmic binding protein-like I Histidine-containing phosphotransfer domain, HPT domain 11
Trigger factor ribosome-binding domain FKBP-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Sensory domain-like Nucleotide cyclase 11
Nucleotide-binding domain ADC-like 11
GAF domain-like CBS-domain pair 11
Ribokinase-like Nucleotidylyl transferase 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
WD40 repeat-like NHL repeat 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
TerB-like Chaperone J-domain 11
C-terminal effector domain of the bipartite response regulators TPR-like 11
Quinoprotein alcohol dehydrogenase-like PYP-like sensor domain (PAS domain) 11
Carbohydrate binding domain Carbohydrate binding domain 11
ClpP/crotonase Rudiment single hybrid motif 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
ACT-like Formyltransferase 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
RuvA domain 2-like JAB1/MPN domain 11
PIN domain-like Ribonuclease H-like 11
H-NS histone-like proteins H-NS histone-like proteins 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Chitinase insertion domain Carbohydrate binding domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Globin-like Nucleotide cyclase 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
(Trans)glycosidases Chitinase insertion domain 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
PapD-like Periplasmic chaperone C-domain 11
2Fe-2S ferredoxin-like Nucleotide-binding domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
CheY-like PLP-dependent transferases 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
CarD-like TRCF domain-like 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 11
Tricorn protease domain 2 ClpP/crotonase 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Multiheme cytochromes Multiheme cytochromes 11
ACP-like ACP-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Lysozyme-like PGBD-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
vWA-like TPR-like 11
Quinoprotein alcohol dehydrogenase-like Nucleotide cyclase 11
EAL domain-like CBS-domain pair 11
Zn-dependent exopeptidases LysM domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
OMPA-like OmpA-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
alpha/beta-Hydrolases TSP type-3 repeat 11
Translation proteins ThrRS/AlaRS common domain 11
Porins Porins 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
Thioredoxin-like TPR-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
PHP domain-like AF1531-like 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Ankyrin repeat Ankyrin repeat 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Translation proteins "Winged helix" DNA-binding domain 11
Formyltransferase FMT C-terminal domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Periplasmic binding protein-like II Lysozyme-like 11
LexA/Signal peptidase LexA/Signal peptidase 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
DPP6 N-terminal domain-like Composite domain of metallo-dependent hydrolases 11
CBS-domain pair Nucleotide cyclase 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like I ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
HCP-like Sec-C motif 11
Quinoprotein alcohol dehydrogenase-like EAL domain-like 11
Flavoproteins Riboflavin synthase domain-like 11
Ricin B-like lectins Ricin B-like lectins 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Putative DNA-binding domain Translation proteins 11
Ribonuclease H-like HRDC-like 11
OMPA-like TSP type-3 repeat 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
4Fe-4S ferredoxins Fe-only hydrogenase 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
(Trans)glycosidases Carbohydrate binding domain 11
Cytidine deaminase-like Cytidine deaminase-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Chorismate mutase II ACT-like 11
Zinc beta-ribbon DNA primase core 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
ALDH-like Dehydroquinate synthase-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Barwin-like endoglucanases Sporulation related repeat 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
Hsp33 domain HSP33 redox switch-like 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
E set domains Chitinase insertion domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Phase 1 flagellin Phase 1 flagellin 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Protease propeptides/inhibitors Subtilisin-like 11
Translation proteins PRC-barrel domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Periplasmic binding protein-like I PYP-like sensor domain (PAS domain) 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
CheY-like CheC-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Cupredoxins Cytochrome c 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Caspase-like 11
alpha-helical ferredoxin Formate dehydrogenase/DMSO reductase, domains 1-3 11
Periplasmic binding protein-like I Periplasmic binding protein-like II 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Sensory domain-like Sporulation response regulatory protein Spo0B 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PurS-like Class I glutamine amidotransferase-like 11
Periplasmic binding protein-like I CheY-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
WD40 repeat-like PYP-like sensor domain (PAS domain) 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 11
Homeodomain-like TATA-box binding protein-like 11
PurS-like FGAM synthase PurL, linker domain 11
Nucleotide-binding domain Formate dehydrogenase/DMSO reductase, domains 1-3 11
CheY-like Ornithine decarboxylase C-terminal domain 11
C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase MetI-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
L domain-like Protein kinase-like (PK-like) 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Ribonuclease H-like RuvA domain 2-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Calcium-dependent phosphotriesterase EAL domain-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
MetI-like MetI-like 11
ACT-like Homeodomain-like 11
GspK insert domain-like GspK insert domain-like 11
Arabinanase/levansucrase/invertase Ricin B-like lectins 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Multiheme cytochromes FAD/NAD(P)-binding domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Methionine synthase domain Methionine synthase activation domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Homocysteine S-methyltransferase Methionine synthase domain 11
GAF domain-like GAF domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
PHP14-like Phospholipase D/nuclease 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Quinoprotein alcohol dehydrogenase-like Calcium-dependent phosphotriesterase 11
Mss4-like Peptide methionine sulfoxide reductase 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
"Winged helix" DNA-binding domain MOP-like 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Acetoacetate decarboxylase-like FAD/NAD(P)-binding domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Translation proteins Translation proteins 11
Carbohydrate-binding domain (Trans)glycosidases 11
PPK N-terminal domain-like PHP14-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Thermostable phytase (3-phytase) Thermostable phytase (3-phytase) 11
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Galactose-binding domain-like PKD domain 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
2Fe-2S ferredoxin-like ADC-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
TATA-box binding protein-like DNA-glycosylase 11
Metalloproteases ("zincins"), catalytic domain PKD domain 11
beta-N-acetylhexosaminidase-like domain E set domains 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
Metallo-hydrolase/oxidoreductase SCP-like 11
Nucleic acid-binding proteins GAD domain-like 11
HAMP domain-like EAL domain-like 11
FabD/lysophospholipase-like ACP-like 11
DNA clamp DNA clamp 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
cAMP-binding domain-like CBS-domain pair 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
CheY-like EAL domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
YegP-like YegP-like 11
Protease propeptides/inhibitors Galactose-binding domain-like 11
TGS-like ThrRS/AlaRS common domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Tricorn protease domain 2 PDZ domain-like 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
(Phosphotyrosine protein) phosphatases II NAD kinase/diacylglycerol kinase-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
PheT/TilS domain Putative DNA-binding domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
Class I glutamine amidotransferase-like Homeodomain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nucleic acid-binding proteins BRCT domain 11
Nucleotidylyl transferase tRNA-binding arm 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Carbohydrate-binding domain E set domains 11
HisI-like all-alpha NTP pyrophosphatases 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Tex N-terminal region-like Ribonuclease H-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
HAMP domain-like Nucleotide cyclase 11
Periplasmic binding protein-like II ACT-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
FAD-linked oxidoreductase ALDH-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Ribokinase-like Thiamin phosphate synthase 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
E set domains Carbohydrate binding domain 11
DNase I-like PKD domain 11
ClpP/crotonase Glutathione synthetase ATP-binding domain-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
WD40 repeat-like Nucleotide cyclase 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
PLP-dependent transferases PLP-dependent transferases 11
YajQ-like YajQ-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
WD40 repeat-like EAL domain-like 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
GIY-YIG endonuclease RuvA domain 2-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Globin-like Riboflavin synthase domain-like 11
Acid proteases Acid proteases 11
Aldolase Single hybrid motif 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Homeodomain-like DNA-glycosylase 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Chorismate mutase II Aldolase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]