SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Agrobacterium radiobacter K84

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

738 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1193
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 8113
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 512
P-loop containing nucleoside triphosphate hydrolases MOP-like 491
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4120
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 395
Homeodomain-like Homeodomain-like 367
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 352
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 327
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 311
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 306
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 272
GroES-like NAD(P)-binding Rossmann-fold domains 272
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 256
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 254
Actin-like ATPase domain Actin-like ATPase domain 229
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 221
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 223
CheY-like C-terminal effector domain of the bipartite response regulators 213
Thioredoxin-like GST C-terminal domain-like 202
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 191
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 185
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 186
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 174
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 164
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 164
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 164
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 164
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 164
Nucleotide cyclase EAL domain-like 158
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 157
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 146
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 142
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 121
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1110
lambda repressor-like DNA-binding domains RmlC-like cupins 112
RmlC-like cupins Homeodomain-like 113
Enolase N-terminal domain-like Enolase C-terminal domain-like 111
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1110
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 104
"Winged helix" DNA-binding domain GAF domain-like 101
Folate-binding domain Aminomethyltransferase beta-barrel domain 104
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 109
Thiolase-like Thiolase-like 102
"Winged helix" DNA-binding domain Chorismate lyase-like 101
PreATP-grasp domain Rudiment single hybrid motif 104
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 93
"Winged helix" DNA-binding domain Actin-like ATPase domain 93
Homeodomain-like SIS domain 92
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 88
PYP-like sensor domain (PAS domain) Nucleotide cyclase 86
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 83
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 86
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 82
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
Homodimeric domain of signal transducing histidine kinase CheY-like 88
CheY-like P-loop containing nucleoside triphosphate hydrolases 73
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 72
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 71
MetI-like MetI-like 72
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 72
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 73
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 71
Class I glutamine amidotransferase-like Homeodomain-like 72
FAD/NAD(P)-binding domain Folate-binding domain 72
PYP-like sensor domain (PAS domain) EAL domain-like 75
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 65
"Winged helix" DNA-binding domain PLP-dependent transferases 61
Trypsin-like serine proteases PDZ domain-like 64
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 63
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 63
MalF N-terminal region-like MetI-like 61
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 63
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 61
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 64
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 63
Regulatory protein AraC Homeodomain-like 61
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 63
CheY-like Homeodomain-like 62
(Trans)glycosidases Glycosyl hydrolase domain 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
PreATP-grasp domain Single hybrid motif 53
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
Calcium ATPase, transduction domain A HAD-like 54
PDZ domain-like PDZ domain-like 54
Glutathione synthetase ATP-binding domain-like Single hybrid motif 53
PYP-like sensor domain (PAS domain) CheY-like 55
ParB/Sulfiredoxin KorB DNA-binding domain-like 51
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 51
HAD-like Calcium ATPase, transmembrane domain M 54
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 54
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
CheY-like CheY-like 54
PH0987 N-terminal domain-like Cyclophilin-like 53
Cytochrome c Cytochrome c 55
PLP-binding barrel Alanine racemase C-terminal domain-like 51
Rudiment single hybrid motif Single hybrid motif 53
Chaperone J-domain HSP40/DnaJ peptide-binding domain 43
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 43
ACT-like ACT-like 43
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 44
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 42
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 42
FAD-linked reductases, C-terminal domain Folate-binding domain 41
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 43
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 43
CBS-domain pair FAD-binding/transporter-associated domain-like 41
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 41
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 42
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 42
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 42
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 43
Translation proteins EF-G C-terminal domain-like 43
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 42
Alpha-L RNA-binding motif Pseudouridine synthase 42
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
Galactose-binding domain-like (Trans)glycosidases 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
HlyD-like secretion proteins HlyD-like secretion proteins 42
Lysozyme-like beta-lactamase/transpeptidase-like 43
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 41
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 32
GroEL equatorial domain-like GroEL-intermediate domain like 31
PGBD-like L,D-transpeptidase catalytic domain-like 33
TPR-like TPR-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 32
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 31
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 32
PurM N-terminal domain-like PurM C-terminal domain-like 32
NAD(P)-binding Rossmann-fold domains ACT-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
ACT-like Formyltransferase 31
Homeodomain-like Probable bacterial effector-binding domain 31
L30e-like alpha/beta knot 32
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 33
Aldolase post-HMGL domain-like 33
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 32
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 32
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
Lysozyme-like PGBD-like 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 31
Acetyl-CoA synthetase-like ACP-like 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
GroEL equatorial domain-like GroEL apical domain-like 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Phospholipase D/nuclease Phospholipase D/nuclease 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
HCP-like HCP-like 32
MetI-like P-loop containing nucleoside triphosphate hydrolases 33
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 32
GroEL-intermediate domain like GroEL apical domain-like 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
CoA-dependent acyltransferases CoA-dependent acyltransferases 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 22
HD-domain/PDEase-like ACT-like 22
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 22
MgtE N-terminal domain-like CBS-domain pair 21
ISP domain Bet v1-like 21
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 22
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 22
HAMP domain-like PYP-like sensor domain (PAS domain) 22
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 21
CheY-like Nucleotide cyclase 21
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
beta-lactamase/transpeptidase-like Sporulation related repeat 22
Translation proteins Ribosomal protein S5 domain 2-like 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Sensory domain-like HAMP domain-like 22
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
Thioredoxin-like FAD/NAD(P)-binding domain 22
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Cyclophilin-like Cyclophilin-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
alpha/beta-Hydrolases Galactose-binding domain-like 21
E set domains Glycosyl hydrolase domain 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 22
Nucleotidyltransferase ACT-like 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
CoA-dependent acyltransferases alpha/beta-Hydrolases 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Single hybrid motif TK C-terminal domain-like 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
ACP-like alpha/beta-Hydrolases 22
Resolvase-like Homeodomain-like 22
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
GAF domain-like Nucleotide cyclase 22
PDZ domain-like ClpP/crotonase 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
Single hybrid motif CoA-dependent acyltransferases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
alpha-helical ferredoxin Nucleotide-binding domain 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
MFS general substrate transporter MFS general substrate transporter 21
ClpP/crotonase ClpP/crotonase 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
(Trans)glycosidases Anthrax protective antigen 21
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
Beta-D-glucan exohydrolase, C-terminal domain Anthrax protective antigen 21
CBS-domain pair MgtE membrane domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
(Trans)glycosidases Class I glutamine amidotransferase-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 22
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
E set domains (Trans)glycosidases 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 22
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 22
Triger factor/SurA peptide-binding domain-like FKBP-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
GroES-like GroES-like 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 22
Clc chloride channel CBS-domain pair 21
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 22
MgtE N-terminal domain-like MgtE membrane domain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HD-domain/PDEase-like Nucleotidyltransferase 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Translation proteins ThrRS/AlaRS common domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Adhesin YadA, collagen-binding domain Pili subunits 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
Cupredoxins Cupredoxins 22
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Ribonuclease H-like DNA/RNA polymerases 11
PHP domain-like AF1531-like 11
2Fe-2S ferredoxin-like ADC-like 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Ferritin-like HAD-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
AGR C 984p-like AGR C 984p-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
PIN domain-like DNA/RNA polymerases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
PHP14-like Phospholipase D/nuclease 11
Nucleotide cyclase TPR-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Rudiment single hybrid motif Cyclophilin-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Metalloproteases ("zincins"), catalytic domain beta-Roll 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Amine oxidase N-terminal region Amine oxidase catalytic domain 11
TGS-like Class II aaRS ABD-related 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
alpha-helical ferredoxin ARM repeat 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Translation proteins PRC-barrel domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
YebC-like PFL-like glycyl radical enzymes 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Ferritin-like Ferritin-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase alpha/beta-Hydrolases 11
Ferritin-like MFS general substrate transporter 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain NAD(P)-linked oxidoreductase 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Resolvase-like Putative DNA-binding domain 11
TK C-terminal domain-like Thiolase-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
TGS-like ACT-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
SAM/Pointed domain Nucleotide cyclase 11
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain LysM domain 11
Ribonuclease H-like HRDC-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
Nucleotidylyl transferase tRNA-binding arm 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Tex N-terminal region-like RuvA domain 2-like 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
beta-Barrel protease inhibitors beta-Barrel protease inhibitors 11
PreATP-grasp domain Cyclophilin-like 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Trigger factor ribosome-binding domain FKBP-like 11
NagB/RpiA/CoA transferase-like DAK1/DegV-like 11
Thioredoxin-like TPR-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
DeoB insert domain-like Alkaline phosphatase-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
LysM domain Duplicated hybrid motif 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Actin-like ATPase domain P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
TPR-like Terpenoid cyclases/Protein prenyltransferases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Dihydropteroate synthetase-like Methionine synthase domain 11
YlxR-like L30e-like 11
GAF domain-like Phosphohistidine domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Putative DNA-binding domain lambda repressor-like DNA-binding domains 11
CoA-dependent acyltransferases ACP-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
FAD-binding/transporter-associated domain-like Molybdenum cofactor-binding domain 11
CO dehydrogenase molybdoprotein N-domain-like Cytochrome c 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Carbamate kinase-like ACT-like 11
Formyltransferase FMT C-terminal domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
ADC synthase Class I glutamine amidotransferase-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Nucleic acid-binding proteins GAD domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Chondroitin AC/alginate lyase Concanavalin A-like lectins/glucanases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
E set domains E set domains 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
PH0987 N-terminal domain-like Single hybrid motif 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
alpha/beta-Hydrolases Tautomerase/MIF 11
Sm-like ribonucleoproteins cAMP-binding domain-like 11
2Fe-2S ferredoxin-like FAD/NAD(P)-binding domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Putative DNA-binding domain RmlC-like cupins 11
HAMP domain-like Nucleotide cyclase 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) GAF domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
PreATP-grasp domain PreATP-grasp domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
beta-Roll Concanavalin A-like lectins/glucanases 11
Acyl-CoA N-acyltransferases (Nat) SCP-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
TPR-like Glutathione synthetase ATP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
HCP-like PGBD-like 11
RuvA domain 2-like BRCT domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Class I glutamine amidotransferase-like Glycosyl hydrolase domain 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
FAD/NAD(P)-binding domain Acetyl-CoA synthetase-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
PPK N-terminal domain-like PHP14-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Tex N-terminal region-like Ribonuclease H-like 11
HD-domain/PDEase-like TGS-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Nucleic acid-binding proteins BRCT domain 11
FliG FliG 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Mechanosensitive channel protein MscS (YggB), C-terminal domain cAMP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Hsp33 domain HSP33 redox switch-like 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Metallo-dependent phosphatases LysM domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases ARM repeat 11
Thiamin diphosphate-binding fold (THDP-binding) Thiolase-like 11
Class II aaRS and biotin synthetases Translation proteins 11
lambda repressor-like DNA-binding domains ARM repeat 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Pectin lyase-like Autotransporter 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
ACP-like Tautomerase/MIF 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
TROVE domain-like vWA-like 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
TerB-like Chaperone J-domain 11
GAF domain-like EAL domain-like 11
Voltage-gated potassium channels cAMP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
YjeF N-terminal domain-like Ribokinase-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Ferritin-like Calcium ATPase, transduction domain A 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
TGS-like ThrRS/AlaRS common domain 11
Galactose mutarotase-like Galactose mutarotase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
RuvA domain 2-like RuvA domain 2-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
post-HMGL domain-like Single hybrid motif 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Molybdenum cofactor-binding domain Cytochrome c 11
Fibronectin type III Concanavalin A-like lectins/glucanases 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Amine oxidase N-terminal region Amine oxidase N-terminal region 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
YWTD domain YWTD domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
PheT/TilS domain Putative DNA-binding domain 11
Thioredoxin-like Nqo1 middle domain-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
dUTPase-like dUTPase-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
NAD(P)-binding Rossmann-fold domains Thioesterase/thiol ester dehydrase-isomerase 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
Nucleotidyltransferase TGS-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
SAM/Pointed domain P-loop containing nucleoside triphosphate hydrolases 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
ARM repeat ARM repeat 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
PreATP-grasp domain Aldolase 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
GAF domain-like Homeodomain-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Hairpin loop containing domain-like Terpenoid cyclases/Protein prenyltransferases 11
Ankyrin repeat Ankyrin repeat 11
PLP-dependent transferases PLP-dependent transferases 11
ACP-like Trimeric LpxA-like enzymes 11
NAD(P)-binding Rossmann-fold domains NAD(P)-linked oxidoreductase 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
FAD-linked reductases, C-terminal domain Thioredoxin-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
PHP domain-like PHP domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Rudiment single hybrid motif post-HMGL domain-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Translation proteins Translation proteins 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
FAD-binding/transporter-associated domain-like CO dehydrogenase molybdoprotein N-domain-like 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
DNA-glycosylase Nudix 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
HMA, heavy metal-associated domain HAD-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 11
Serine metabolism enzymes domain ACT-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Macro domain-like Zn-dependent exopeptidases 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
PIN domain-like Ribonuclease H-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Bacterial muramidases Lysozyme-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors DAK1/DegV-like 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
Single hybrid motif Thiolase-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Acetyl-CoA synthetase-like Tautomerase/MIF 11
Cyclophilin-like Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Transmembrane di-heme cytochromes YceI-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
MFS general substrate transporter Multidrug resistance efflux transporter EmrE 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Homeodomain-like NagB/RpiA/CoA transferase-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Periplasmic binding protein-like II ACT-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
vWA-like TPR-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Carbamate kinase-like PUA domain-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Thioredoxin-like Thioredoxin-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
FAD/NAD(P)-binding domain NAD(P)-binding Rossmann-fold domains 11
Rudiment single hybrid motif Aldolase 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
NTF2-like C-terminal effector domain of the bipartite response regulators 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
DNA clamp DNA clamp 11
YrdC/RibB RibA-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
HRDC-like HRDC-like 11
Aldolase Single hybrid motif 11
Ribbon-helix-helix ACT-like 11
Nudix "Winged helix" DNA-binding domain 11
TGS-like Class II aaRS and biotin synthetases 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
CarD-like TRCF domain-like 11
E set domains alpha/beta-Hydrolases 11
HAMP domain-like EAL domain-like 11
FAD-linked oxidoreductase ALDH-like 11
PUA domain-like alpha/beta knot 11
PreATP-grasp domain post-HMGL domain-like 11
Pectin lyase-like Cytidine deaminase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Protein kinase-like (PK-like) PLP-dependent transferases 11
HAMP domain-like PP2C-like 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
CBS-domain pair Nucleotide cyclase 11
EAL domain-like CBS-domain pair 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
4Fe-4S ferredoxins ADC-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
6-phosphogluconate dehydrogenase C-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
Zinc beta-ribbon DNA primase core 11
Hairpin loop containing domain-like TPR-like 11
Apolipoprotein A-I Apolipoprotein A-I 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Chondroitin AC/alginate lyase Fibronectin type III 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Acyl-CoA N-acyltransferases (Nat) TPR-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11

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