SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combination pairs in Escherichia coli 'BL21-Gold(DE3)pLysS AG'

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

783 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 421
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3113
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2213
Actin-like ATPase domain Actin-like ATPase domain 218
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 196
GroES-like NAD(P)-binding Rossmann-fold domains 183
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 175
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 171
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 143
Homeodomain-like Homeodomain-like 146
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 141
CheY-like C-terminal effector domain of the bipartite response regulators 141
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 136
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 121
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 128
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 115
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 115
Thioredoxin-like GST C-terminal domain-like 101
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 91
PapD-like Periplasmic chaperone C-domain 91
P-loop containing nucleoside triphosphate hydrolases Translation proteins 87
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 82
Enolase N-terminal domain-like Enolase C-terminal domain-like 81
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 73
(Trans)glycosidases Glycosyl hydrolase domain 76
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 73
"Winged helix" DNA-binding domain GAF domain-like 71
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
P-loop containing nucleoside triphosphate hydrolases MOP-like 71
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 73
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 73
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 72
RmlC-like cupins Homeodomain-like 73
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 71
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 64
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
ACT-like ACT-like 65
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 61
Pectin lyase-like Autotransporter 64
Thiolase-like Thiolase-like 61
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 63
Nucleotide cyclase EAL domain-like 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 64
PurM N-terminal domain-like PurM C-terminal domain-like 52
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 55
"Winged helix" DNA-binding domain Chorismate lyase-like 51
Alpha-L RNA-binding motif Pseudouridine synthase 51
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 51
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 53
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 53
Galactose mutarotase-like (Trans)glycosidases 54
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 52
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 55
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54
CBS-domain pair FAD-binding/transporter-associated domain-like 51
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 54
Regulatory protein AraC Homeodomain-like 52
Phospholipase D/nuclease Phospholipase D/nuclease 53
TrpR-like TrpR-like 51
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 54
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 55
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 55
Homodimeric domain of signal transducing histidine kinase CheY-like 55
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 53
HAD-like Calcium ATPase, transmembrane domain M 43
Homeodomain-like SIS domain 41
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 41
PYP-like sensor domain (PAS domain) Nucleotide cyclase 44
CheY-like Homeodomain-like 41
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 43
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
PLP-binding barrel Alanine racemase C-terminal domain-like 42
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
CheY-like Histidine-containing phosphotransfer domain, HPT domain 44
Nucleic acid-binding proteins RuvA domain 2-like 44
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
PreATP-grasp domain Rudiment single hybrid motif 41
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 43
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 41
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
TrkA C-terminal domain-like TrkA C-terminal domain-like 42
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
CheY-like P-loop containing nucleoside triphosphate hydrolases 41
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 43
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 43
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 41
HlyD-like secretion proteins HlyD-like secretion proteins 43
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
TPR-like TPR-like 44
Calcium ATPase, transduction domain A HAD-like 43
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
HPr-like Phoshotransferase/anion transport protein 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
Translation proteins EF-G C-terminal domain-like 33
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 32
Nucleotidyltransferase HD-domain/PDEase-like 32
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 32
PYP-like sensor domain (PAS domain) Homeodomain-like 32
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 33
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
HPr-like Phosphohistidine domain 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 32
Nqo5-like HydB/Nqo4-like 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 33
Nucleotidyltransferase ACT-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
alpha-helical ferredoxin Nucleotide-binding domain 32
"Winged helix" DNA-binding domain Actin-like ATPase domain 32
E set domains (Trans)glycosidases 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 31
Galactose mutarotase-like Glycosyl hydrolase domain 33
Lysozyme-like beta-lactamase/transpeptidase-like 33
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 32
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 31
HD-domain/PDEase-like ACT-like 32
Galactose-binding domain-like (Trans)glycosidases 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
MetI-like MetI-like 31
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 31
Triger factor/SurA peptide-binding domain-like FKBP-like 33
PYP-like sensor domain (PAS domain) EAL domain-like 33
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 31
GAF domain-like Homeodomain-like 33
Trypsin-like serine proteases PDZ domain-like 32
PDZ domain-like PDZ domain-like 32
Translation proteins SH3-like domain Nucleic acid-binding proteins 32
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 32
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 22
DsbC/DsbG N-terminal domain-like Thioredoxin-like 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 22
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
CheY-like PLP-dependent transferases 21
Single hybrid motif CoA-dependent acyltransferases 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HMA, heavy metal-associated domain HAD-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Glucose permease domain IIB Duplicated hybrid motif 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Homeodomain-like TrpR-like 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Zinc beta-ribbon Zinc beta-ribbon 22
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 22
4Fe-4S ferredoxins Nucleotide-binding domain 21
E set domains alpha/beta-Hydrolases 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
Cupredoxins Cupredoxins 21
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 21
Formyltransferase FMT C-terminal domain-like 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Galactose-binding domain-like Galactose mutarotase-like 21
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
PK beta-barrel domain-like PK C-terminal domain-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 21
L30e-like alpha/beta knot 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phoshotransferase/anion transport protein 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
Galactose mutarotase-like E set domains 22
E set domains Glycosyl hydrolase domain 22
Phoshotransferase/anion transport protein PTS system IIB component-like 22
Ribonuclease H-like DNA/RNA polymerases 22
GroES-like GroES-like 21
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
H-NS histone-like proteins H-NS histone-like proteins 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 21
Resolvase-like Homeodomain-like 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Actin-like ATPase domain HD-domain/PDEase-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Phosphohistidine domain Phoshotransferase/anion transport protein 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
4Fe-4S ferredoxins Radical SAM enzymes 21
Bacterial adhesins Bacterial adhesins 21
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 21
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
HD-domain/PDEase-like TGS-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Homeodomain-like Probable bacterial effector-binding domain 21
Nucleotidyltransferase TGS-like 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
ACT-like P-loop containing nucleoside triphosphate hydrolases 22
Carbamate kinase-like ACT-like 22
TGS-like ACT-like 21
ACT-like NAD(P)-binding Rossmann-fold domains 22
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Phosphoenolpyruvate/pyruvate domain Phoshotransferase/anion transport protein 21
FMN-linked oxidoreductases Nucleotide-binding domain 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
CheY-like Ornithine decarboxylase C-terminal domain 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
ISP domain Bet v1-like 22
HPr-like Phosphoenolpyruvate/pyruvate domain 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
FliG FliG 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
YegP-like YegP-like 11
GAF domain-like Nucleotide cyclase 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
CheY-binding domain of CheA CheW-like 11
TTHA1013/TTHA0281-like lambda repressor-like DNA-binding domains 11
Pseudouridine synthase PUA domain-like 11
PDZ domain-like ClpP/crotonase 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
PurS-like FGAM synthase PurL, linker domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Cysteine proteinases Glutathione synthetase ATP-binding domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
JAB1/MPN domain Cysteine proteinases 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
PurS-like PurM N-terminal domain-like 11
Sensory domain-like Sporulation response regulatory protein Spo0B 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
E set domains E set domains 11
NTF2-like Sec-C motif 11
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
TGS-like ThrRS/AlaRS common domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 11
Aldolase post-HMGL domain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
YajQ-like YajQ-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
RmlC-like cupins A DNA-binding domain in eukaryotic transcription factors 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
Methionine synthase domain Methionine synthase activation domain-like 11
TGS-like Class II aaRS ABD-related 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
FMT C-terminal domain-like NAD(P)-binding Rossmann-fold domains 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Hcp1-like His-Me finger endonucleases 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
DNA clamp DNA clamp 11
Pili subunits GspK insert domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
MFS general substrate transporter MFS general substrate transporter 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Zinc beta-ribbon DNA primase core 11
Ribbon-helix-helix ALDH-like 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
CheY-like CheY-like 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
HAMP domain-like CheY-like 11
FMN-linked oxidoreductases alpha-helical ferredoxin 11
Galactose mutarotase-like Putative glucosidase YicI, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
PTS system fructose IIA component-like Phosphohistidine domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
PLP-dependent transferases PLP-dependent transferases 11
PTS system IIB component-like PTS system IIB component-like 11
LysM domain LysM domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Barwin-like endoglucanases Sporulation related repeat 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Tex N-terminal region-like RuvA domain 2-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Periplasmic binding protein-like II CheY-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
lambda repressor-like DNA-binding domains Nucleotidylyl transferase 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
ACP-like alpha/beta-Hydrolases 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
LysM domain Duplicated hybrid motif 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Chorismate mutase II Periplasmic binding protein-like II 11
ACT-like Formyltransferase 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
UROD/MetE-like UROD/MetE-like 11
RuvA domain 2-like RuvA domain 2-like 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Glycosyl hydrolase domain Putative glucosidase YicI, C-terminal domain 11
MalF N-terminal region-like MetI-like 11
PPK N-terminal domain-like PHP14-like 11
Carbohydrate binding domain (Trans)glycosidases 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Band 7/SPFH domain Band 7/SPFH domain 11
Galactose mutarotase-like Six-hairpin glycosidases 11
PrpR receptor domain-like Homeodomain-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Putative DNA-binding domain Translation proteins 11
Periplasmic binding protein-like II GlnB-like 11
Class I glutamine amidotransferase-like Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
A DNA-binding domain in eukaryotic transcription factors Homeodomain-like 11
Periplasmic binding protein-like II ACT-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Ribonuclease H-like RuvA domain 2-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
RNase III domain-like dsRNA-binding domain-like 11
Ribbon-helix-helix ACT-like 11
CarD-like TRCF domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Chorismate mutase II ACT-like 11
Single hybrid motif Single hybrid motif 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
GAF domain-like Phosphohistidine domain 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 11
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Thioredoxin-like Thioredoxin-like 11
Carbamate kinase-like PUA domain-like 11
C-terminal effector domain of the bipartite response regulators EAL domain-like 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
Calcium ATPase, transmembrane domain M Mechanosensitive channel protein MscS (YggB), transmembrane region 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
PTS system fructose IIA component-like PTS IIb component 11
MOSC N-terminal domain-like 2Fe-2S ferredoxin-like 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
PHP14-like Phospholipase D/nuclease 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Thioredoxin-like TPR-like 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PIN domain-like DNA/RNA polymerases 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain MukF C-terminal domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
S-adenosyl-L-methionine-dependent methyltransferases FAD/NAD(P)-binding domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
alpha-helical ferredoxin alpha-helical ferredoxin 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleic acid-binding proteins PheT/TilS domain 11
Globin-like Nucleotide cyclase 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
PYP-like sensor domain (PAS domain) CheY-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
FAD-linked oxidoreductase ALDH-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Dihydropteroate synthetase-like Methionine synthase domain 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
PheT/TilS domain Putative DNA-binding domain 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
HisI-like all-alpha NTP pyrophosphatases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Metallo-hydrolase/oxidoreductase SCP-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Flavoproteins Riboflavin synthase domain-like 11
SIS domain CBS-domain pair 11
Ribokinase-like Nucleotidylyl transferase 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
Rhomboid-like C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 11
CheC-like Surface presentation of antigens (SPOA) 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Trigger factor ribosome-binding domain FKBP-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
"Winged helix" DNA-binding domain Ribokinase-like 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
GspK insert domain-like GspK insert domain-like 11
Ribonuclease H-like HRDC-like 11
TGS-like Class II aaRS and biotin synthetases 11
Tex N-terminal region-like Ribonuclease H-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
RuvA domain 2-like BRCT domain 11
EPT/RTPC-like EPT/RTPC-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Acylphosphatase/BLUF domain-like EAL domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
PUA domain-like alpha/beta knot 11
DeoB insert domain-like Alkaline phosphatase-like 11
PTS system fructose IIA component-like HPr-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
DNA primase core DNA primase DnaG, C-terminal domain 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
PIN domain-like Ribonuclease H-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
TATA-box binding protein-like DNA-glycosylase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
(Trans)glycosidases Putative glucosidase YicI, C-terminal domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Bacterial muramidases Periplasmic binding protein-like I 11
Calcium ATPase, transmembrane domain M Sm-like ribonucleoproteins 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase tRNA-binding arm 11
Pectin lyase-like Pectin lyase-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Globin-like Riboflavin synthase domain-like 11
GAF domain-like GAF domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
ACT-like PYP-like sensor domain (PAS domain) 11
Cytochrome c Cytochrome c 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PurS-like Class I glutamine amidotransferase-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
PreATP-grasp domain PreATP-grasp domain 11
PurS-like PurM C-terminal domain-like 11
PTS system fructose IIA component-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Translation proteins PRC-barrel domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Hsp33 domain HSP33 redox switch-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
FAH FAH 11
YgfB-like Sec-C motif 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Class II aaRS and biotin synthetases SufE/NifU 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
ACT-like Homeodomain-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
HCP-like HCP-like 11
Bacterial muramidases Lysozyme-like 11
DNA-binding domain DNA breaking-rejoining enzymes 11
CheY-like Methylesterase CheB, C-terminal domain 11
Acyl-CoA N-acyltransferases (Nat) Thioesterase/thiol ester dehydrase-isomerase 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
FKBP-like FKBP-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Flavoproteins Rubredoxin-like 11
Cysteine proteinases PreATP-grasp domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
Periplasmic binding protein-like II Lysozyme-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
MFS general substrate transporter Proline/betaine transporter ProP, C-terminal cytoplasmic domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Translation proteins Translation proteins 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
Metallo-hydrolase/oxidoreductase Rubredoxin-like 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
HAD-like Ribosomal protein S5 domain 2-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Nucleic acid-binding proteins GAD domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
2Fe-2S ferredoxin-like ADC-like 11
DNA-glycosylase Nudix 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Class I glutamine amidotransferase-like Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 11
Cytidine deaminase-like Cytidine deaminase-like 11
Isochorismatase-like hydrolases ACP-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
ALDH-like Dehydroquinate synthase-like 11
Nucleic acid-binding proteins BRCT domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Periplasmic binding protein-like I Homeodomain-like 11
YdgH-like YdgH-like 11
4Fe-4S ferredoxins ADC-like 11
ClpP/crotonase ClpP/crotonase 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Adhesin YadA, collagen-binding domain Pili subunits 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Lysozyme-like LysM domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Ribosomal protein L6 Ribosomal protein L6 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Translation proteins ThrRS/AlaRS common domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Calcium ATPase, transmembrane domain M Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
Formyltransferase NAD(P)-binding Rossmann-fold domains 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
HRDC-like HRDC-like 11
Translation proteins "Winged helix" DNA-binding domain 11
Acyl-CoA N-acyltransferases (Nat) Nucleotidylyl transferase 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Macro domain-like Zn-dependent exopeptidases 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
AhpD-like AhpD-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
OMPA-like OmpA-like 11
Acetyl-CoA synthetase-like ACP-like 11
SacY-like RNA-binding domain PTS-regulatory domain, PRD 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Nudix Nudix 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
CoA-dependent acyltransferases ACP-like 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11

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